BAC Information

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BAC

Clone NameMSMg01-547K14
ChromosomeY (Build37)
Map Location 2,603,659 - 2,603,761
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236
Downstream geneEG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547K14.T7 (MSMg01no547_k14.b1)MSMg01-547K14.TJ (MSMg01no547_k14.g1)
ACCAG612196AG612197
length733725
length of high quality
(start - end)		688 (40 - 727)653 (70 - 722)
definitionCHROMAT_FILE: MSMg01no547_k14.b1 PHD_FILE: MSMg01no547_k14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:21 2005CHROMAT_FILE: MSMg01no547_k14.g1 PHD_FILE: MSMg01no547_k14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TCTCTAACTGGTTTTGATTCCCATATCCTGAGATTAAAGTCCTTTCTAAG
CAGATCTCAACACCTTTTTTTAAAATTTTCTGTCTCACAGTTCTTGAAGA
ATAGATGGGGGAGCAGAGAAAATTTCACCCCAAAAAATTGGCAATTAGTG
GCTGCAGGTGTGAGGGCCAGTTTTCTTCATAGATTTGGCTCCTCAGAGGC
TGCCCATGTTCCAGTGGATGTGTTTCCCTAACCCCACATATGTAGTCAGC
ACTAAATTCACTCAGTGGTCTTTATTAAAATGTGCATGGAATTAAAGCTA
AAAGTGATACAGGAGAAATGGAGAGCAATTCAAGGAGGAGAAGATGGGGA
TGGATTTACTCAAACTCATTATGTTTATGTACAAAGTTCTTCAGCAAAAC
ATTTAAAACTAAGTAAGTAAGTAAATAAGTAAATAAGTAAGTAATAAGCA
AGCAAGCAAGTAAGTAAAAAATAAATATATGAGTAAATAAACAAATATAT
TTTTATGCAATATCACGTGCAATAGGCATGAAAGTGTGTGTGTGTGTGTG
TGTGTGTGTGTCTTTGTGTGTGTGTCTTTGTGTGTGTGTGTGCATACATG
CATACAGGAGTGTTTGCAGGTATGTAGCAGTTTGATGATTAGAATATCCT
TGGCCCATGGGAAGTGGCACTATTAGCAGATGN

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTCTGATCAGAGAGGGTAATTATTGAAGAC
CTTTTGGACTGGACGTGAAGTTTGGGGCCTGGGGCAGGTAGAGATGATCT
CAGGCCTGTCAGGCTTACAAGACAGATATTGGACCCTCATGTATACAGAG
GGTGCATTTGATATATAATGGACACAAATTAGTGGTCTAAGTATTGATGT
TTAGGAGTAGAAGATTAAAGCAGAATTAGAGTCTGCTTAATGTCCCCAAC
CTCTTTAGGGTTAAGGAAGTGGCCTAGCCTACCTTAAGCAGGAGAGGTAG
GACTGCTTCACAACTTAGAAGATTCCCATCTTCACATACACCTTGGTAAG
CCTGGCAGCAATACAAGTATTATGCACCAGGCATGACTGTAAGTCTCTAA
GCACTCTTGAAGCTTATCATCAGTTATATGGGTGTTTGCATGAAGGATGG
TACGAAGGATAGATGACCTAAGTTTCAGGCTCTGTTAATGCAGGGCAGAA
TTAAGTGAAGTATAATTTCCTAGAGACCATCGTTGGAGGGAAATGATCTA
AAGCTCATGATTGGAGTGTTATATTAGAGGCTCATATGTATGTAAGGATG
CTCTTAGGATACCTGAATTTTGGTACCCTTGGGAAAAATGAAAATTCTGA
GATTCCAATAGTAAACTCCAGTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_k14.b1 MSMg01no547_k14.b1 CHROMAT_FILE:
MSMg01no547_k14.b1 PHD_FILE: MSMg01no547_k14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:21 2005
         (688 letters)



>mm_chrY_2603455_2604543
          Length = 1089

 Score =  153 bits (79), Expect = 5e-41
 Identities = 97/105 (92%), Gaps = 5/105 (4%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatctctaactggttttgattcccatatcctgagattaaagtcctttctaagcag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gaattcatctctaactggttttgattcccatatcctgagattaaagtcctttctaagcag 248

                                                        
Query: 65  atctcaacaccttttt---ttaaaattttctgtctcacagttctt 106
           | |||||||  |||||   || ||||||||||||||||| |||||
Sbjct: 247 acctcaaca--tttttgtttttaaattttctgtctcacaattctt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1089
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1079
Effective search space:   731562
Effective search space used:   731562
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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