BAC Information

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BAC

Clone NameB6Ng01-001A01
Chromosome3 (Build37)
Map Location 130,460,906 - 130,588,950
singlet/doubletdoublet
Overlap geneLOC546811
Upstream geneGm421, Rrh, Nola1, Cfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844, EG668845, Col25a1, Agxt2l1, 2310008M10Rik, Rpl34
Downstream geneLOC545568, Lef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1, Olfr375-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001A01.bB6Ng01-001A01.g
ACCDH839446DH839447
length2391,107
definitionDH839446|Mus musculus domesticus DNA, BAC clone: B6Ng01-001A01, 5' end.DH839447|Mus musculus domesticus DNA, BAC clone: B6Ng01-001A01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,588,712 - 130,588,950)(130,460,906 - 130,462,024)
sequence
gaattcctttaggttgggcccctctccctgtgctgactccacgaagttca
gctcacccttcaagtcccgcagagggctgagtagatgtctcagtttgaaa
agtatttgcctgttgtgtggatttgggagggatcaacttgggtacttaca
gctccaaagcaaaagaatcaaacagatttccaaagtgaatgcacaggagt
gcaggtagctttcctggctctccgggtgggggtgggggg
gaattcctctcagagaaatagcgtgggtgttaatagatgatgtcaggttt
ttatttttctaccatgttataaactggaatgttgaattttccagctttta
aaaaaaaaaaaaaacccggcatgttttgatcgtcagtcccttgagctctg
tacttgtttgggggttttagttcccctccctgatccagtctgaagttctt
tgtctgcaattcaatctctattgctttaatcattttggattgtaccggtg
gcttctcgctaataaaagaaaactggggaagccaggcttggcatgggcca
agcctcttcagctgcagtaagactttacatatgaattgtctgcccacaaa
agggtccactgtcagattaaattaatgagctgcatgttttaatcattaag
gtaatagcaatatgtggattctttgcctctgttttaatcatttctgtgtt
tttaccagctagctcatcaaatgctttcttttgagatgccgttgtcccat
ttcactgcggagaatagcttctatgtggggcagagagaacgctttagagt
tttgagaaaccctaaatagcctcagggcttagtgaaatgtatagctacgt
ctttgtcccagagtgctttatttattagacggaattcggagagacaggtc
tgtggccaccattagcaaatgggaccagtatggggtcggattctcagact
tgaaggcagtaggtgaactttaggtctccgcggccgaggtggaaatgggt
ttattctgagaaccatgggccacacttagaccggtgagttgaaagcgaca
tcaccaaggaagccagcaggactctgattgctttgcggtctctggaaaat
ggctttatacgggctttcaacttgcaggtgggtatctgccgggcgggcga
gctcagcaagagcgtttgtagttttcggaagcatccaggttgagcgcatg
aagcacgttgcctcagctgacttttctaacaaataaatctcgattgagag
agcttgggtggtgagttttagcgcccttactcaggatttagaactgtgcc
aagcccaggtcacttcagtctttagttatacttgctgggatgcagccagc
aggtggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_130588712_130588950
seq2: B6Ng01-001A01.b_43_281 (reverse)

seq1  CCCCCCACCCCCACCCGGAGAGCCAGGAAAGCTACCTGCACTCCTGTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCACCCCCACCCGGAGAGCCAGGAAAGCTACCTGCACTCCTGTGCA  50

seq1  TTCACTTTGGAAATCTGTTTGATTCTTTTGCTTTGGAGCTGTAAGTACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTTGGAAATCTGTTTGATTCTTTTGCTTTGGAGCTGTAAGTACCC  100

seq1  AAGTTGATCCCTCCCAAATCCACACAACAGGCAAATACTTTTCAAACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGATCCCTCCCAAATCCACACAACAGGCAAATACTTTTCAAACTGA  150

seq1  GACATCTACTCAGCCCTCTGCGGGACTTGAAGGGTGAGCTGAACTTCGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCTACTCAGCCCTCTGCGGGACTTGAAGGGTGAGCTGAACTTCGTG  200

seq1  GAGTCAGCACAGGGAGAGGGGCCCAACCTAAAGGAATTC  239
      |||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGCACAGGGAGAGGGGCCCAACCTAAAGGAATTC  239

seq1: chr3_130460906_130462024
seq2: B6Ng01-001A01.g_68_1174

seq1  GAATTCCTCTCAGAGAAATAGCGTGGGTGTTAATAGATGATGTCAGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTCAGAGAAATAGCGTGGGTGTTAATAGATGATGTCAGGTTT  50

seq1  TTATTTTTCTACCATGTTATAAACTGGAATGTTGAATTTTCCAGCTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTCTACCATGTTATAAACTGGAATGTTGAATTTTCCAGCTTTTA  100

seq1  AAAAAAAAAAAAAACCCGGCATGTTTTGATCGTCAGTCCCTTGAGCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAACCCGGCATGTTTTGATCGTCAGTCCCTTGAGCTCTG  150

seq1  TACTTGTTTGGGGGTTTTAGTTCCCCTCCCTGATCCAGTCTGAAGTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTTTGGGGGTTTTAGTTCCCCTCCCTGATCCAGTCTGAAGTTCTT  200

seq1  TGTCTGCAATTCAATCTCTATTGCTTTAATCATTTTGGATTGTACCGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCAATTCAATCTCTATTGCTTTAATCATTTTGGATTGTACCGGTG  250

seq1  GCTTCTCGCTAATAAAAGAAAACTGGGGAAGCCAGGCTTGGCATGGGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCGCTAATAAAAGAAAACTGGGGAAGCCAGGCTTGGCATGGGCCA  300

seq1  AGCCTCTTCAGCTGCAGTAAGACTTTACATATGAATTGTCTGCCCACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTTCAGCTGCAGTAAGACTTTACATATGAATTGTCTGCCCACAAA  350

seq1  AGGGTCCACTGTCAGATTAAATTAATGAGCTGCATGTTTTAATCATTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCCACTGTCAGATTAAATTAATGAGCTGCATGTTTTAATCATTAAG  400

seq1  GTAATAGCAATATGTGGATTCTTTGCCTCTGTTTTAATCATTTCTGTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAGCAATATGTGGATTCTTTGCCTCTGTTTTAATCATTTCTGTGTT  450

seq1  TTTACCAGCTAGCTCATCAAATGCTTTCTTTTGAGATGCCGTTGTCCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCAGCTAGCTCATCAAATGCTTTCTTTTGAGATGCCGTTGTCCCAT  500

seq1  TTCACTGCGGAGAATAGCTTCTATGTGGGGCAGAGAGAACGCTTTAGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGCGGAGAATAGCTTCTATGTGGGGCAGAGAGAACGCTTTAGAGT  550

seq1  TTTGAGAAACCCTAAATAGCCTCAGGGCTTAGTGAAATGTATAGCTACGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAAACCCTAAATAGCCTCAGGGCTTAGTGAAATGTATAGCTACGT  600

seq1  CTTTGTCCCAGAGTGCTTTATTTATTAGACGGAATTCGGAGAGACAGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCCCAGAGTGCTTTATTTATTAGACGGAATTCGGAGAGACAGGTC  650

seq1  TGTGGCCACCATTAGCAAATGGGACCAGTATGGGGTCGGATTCTCAGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCACCATTAGCAAATGGGACCAGTATGGGGTCGGATTCTCAGACT  700

seq1  TGAAGGCAGTAGGTGAACTTTAGGTCTCCGCGGCCGAGGTGGAAATGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCAGTAGGTGAACTTTAGGTCTCCGCGGCCGAGGTGGAAATGGGT  750

seq1  TTATTCTGAGAACCATGGGCCACACTTAGACCGGTGAGTTGAAAGCGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTGAGAACCATGGGCCACACTTAGACCGGTGAGTTGAAAGCGACA  800

seq1  TCACCAAGGAAGCCAGCAGGGACTCTGATTGCTTTGCGGTCTCTGG-AAA  849
      |||||||||||||||||| ||||||||||||||||||||||||||| |||
seq2  TCACCAAGGAAGCCAGCA-GGACTCTGATTGCTTTGCGGTCTCTGGAAAA  849

seq1  TGGCTTTATACGGGCTTTCAACTTGCAGGTGGGTATCTGCCGGGCGGGCG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTATACGGGCTTTCAACTTGCAGGTGGGTATCTGCCGGGCGGGCG  899

seq1  AGGCTCAGCAAGAGCGTTTGTAGTTTTCGGAAGCATCCAGGTTGAGCGCA  949
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-GCTCAGCAAGAGCGTTTGTAGTTTTCGGAAGCATCCAGGTTGAGCGCA  948

seq1  TGAAAGCACGTTGCCCTCAGCTGACTTTTCTAACAAATAAAGCCTCGATT  999
      || |||||||||| |||||||||||||||||||||||||||  |||||||
seq2  TG-AAGCACGTTG-CCTCAGCTGACTTTTCTAACAAATAAA-TCTCGATT  995

seq1  GAGAGAGCCTGGGTGGGTGAGTTTTAGCGCCACTACCTCAGGGATTTAG-  1048
      |||||||| ||||| |||||||||||||||| ||  |||| |||||||| 
seq2  GAGAGAGCTTGGGT-GGTGAGTTTTAGCGCC-CTTACTCA-GGATTTAGA  1042

seq1  ACCGTGCCCAAGCCCAGGTCACCTTTCAGTTCTCTAGTTATATCTTGCTG  1098
      || ||| |||||||||||||||  ||||| ||| |||||||| |||||||
seq2  ACTGTG-CCAAGCCCAGGTCAC--TTCAG-TCTTTAGTTATA-CTTGCTG  1087

seq1  GGATGAAGCCAAGCAGGTGGC  1119
      ||||| |||| ||||||||||
seq2  GGATGCAGCC-AGCAGGTGGC  1107