BAC Information

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BAC

Clone NameB6Ng01-001C21
Chromosome3 (Build37)
Map Location 50,428,684 - 50,557,088
singlet/doubletdoublet
Overlap geneEG621304
Upstream geneLOC100039587, LOC638779, Pcdh18, LOC100039628, LOC639469, Slc7a11, LOC100039667
Downstream geneCcrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684, Mgst2, Maml3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001C21.bB6Ng01-001C21.g
ACCDH839574DH839575
length1,132991
definitionDH839574|Mus musculus domesticus DNA, BAC clone: B6Ng01-001C21, 5' end.DH839575|Mus musculus domesticus DNA, BAC clone: B6Ng01-001C21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,428,684 - 50,429,816)(50,556,546 - 50,557,088)
sequence
gaattcattgaaaactggcacaattctgtcagggcaaagaagatagaaga
cggcaacattaaaacctaggctagctggctctttttgagaagacaccagc
ctcaggcagagcccattggcagctgtcatctacattaaactcctaagagg
agatgggcatacattcccctgaaacctgcagggctatgcagccaggcttt
gaaaactgaagagcctgagacacactaaaggccagaagagtgtcttctct
ttgatagttaagacactagaagcataacttggaatagaccttggatttca
cacagctcggtgtgtactctgaattaatttcccttacaacctgatgttca
aaaaaaaaaaaaatctcaaacttggtctgacagtgaaactccacagtcaa
ctgaaggggggatctcgaatcaccatggaaacgcttcccaaggtgtcttc
tctctgagggtacttccagaaaagtgtgactgaggagagaagacacacct
caagtgtgggccccaggctgaataaaaaggagaaagtgggtggggtgcta
ggatttgtctgtctgtgcttcctgactccagaagcagtgcaaccagctgc
ctcacactcctgccccgccttccctcagactgtaagccaccccaaacact
ttcgttaagttgctcttgtcaggtattttattcccccaaattagaaaatt
aatggatataatttatagtgataaaaggtgttcagtttcttcaatggtaa
cattgcattttcaaatacttggattttaaaaccactcctcatttccccag
ccccatgcttttattagtcttcccacaattttgccagacatcacatattc
cattttaacagagacaagcaattggagaggatgtgcttcagagctgacta
ttgttttctacctttgtcaatgagtgtaatcccttctatcaactcattac
aattggatattgtacaagtgggacttggctatgcagactggctcaggagc
tgggatattggtacttatcaaggaacaaagtacagctggtcagatacatt
ttcttgaaagcatgcgtattggcaatataatatatcatcctgggttatat
gaagggttgacctttgagaaactagtgacatc
gaattccctttacatgactgttcttggcttgtgttttgataacatactat
tctgaaaatctttacgaattatcctaaatttactctgtggtctataaatg
gcacatacaatgctagataatagtacatctgtttatggcatgggttactg
actattccaaacttcttattttcagaagaaaacaaaagactcctttcaaa
atattacttcttattaacgacgtacctggccacctaagagcactgatgga
tgtataatgaaacttagttttttcatgttggctaacatggaacccattta
cattaagtggatcaaggagttattttaatttccacctcttaatacctaag
aaatatggtttataaggtaaggacagccataattattcttctgatagatc
cgagtaatagccattgaaaacctggaaagcatttacattctagattacat
gaagagtctagatgccatgattgcgagccatgggggaagataagactgtc
aataggaactcgagtttgggaaaagtctaccacagtccatatggcaatct
ttgaggagctggagactccagtagaggaaatcacttcaaacacccttaaa
acagacgtagatatgtagcctgagtatgtgaataatgggttggaatgtaa
taacattggattagatgaatagttaattcttccagataaggaaataaaat
tgcctcttaaatagctgaacattatttaaatggcaacaaaggatttagag
tactattgtagaaaatcagttgctacatcagaaacagggtttgagtggac
cgacacaaattgtgatagaagttctactgtgggtaaatgggtagcaagca
ggatcacactctatcggcaaagctctcatgaaagaagagagtcaattgat
gtgctgaactccgctgatgtcttattttaagaaattgccacagccgctcc
agcctttagcaaccactactctagtctgtcagtagtcatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_50428684_50429816
seq2: B6Ng01-001C21.b_44_1175

seq1  GAATTCATTGAAAACTGGCACAATTCTGTCAGGGCAAAGAAGATAGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGAAAACTGGCACAATTCTGTCAGGGCAAAGAAGATAGAAGA  50

seq1  CGGCAACATTAAAACCTAGGCTAGCTGGCTCTTTTTGAGAAGACACCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAACATTAAAACCTAGGCTAGCTGGCTCTTTTTGAGAAGACACCAGC  100

seq1  CTCAGGCAGAGCCCATTGGCAGCTGTCATCTACATTAAACTCCTAAGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCAGAGCCCATTGGCAGCTGTCATCTACATTAAACTCCTAAGAGG  150

seq1  AGATGGGCATACATTCCCCTGAAACCTGCAGGGCTATGCAGCCAGGCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGCATACATTCCCCTGAAACCTGCAGGGCTATGCAGCCAGGCTTT  200

seq1  GAAAACTGAAGAGCCTGAGACACACTAAAGGCCAGAAGAGTGTCTTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTGAAGAGCCTGAGACACACTAAAGGCCAGAAGAGTGTCTTCTCT  250

seq1  TTGATAGTTAAGACACTAGAAGCATAACTTGGAATAGACCTTGGATTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGTTAAGACACTAGAAGCATAACTTGGAATAGACCTTGGATTTCA  300

seq1  CACAGCTCGGTGTGTACTCTGAATTAATTTCCCTTACAACCTGATGTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTCGGTGTGTACTCTGAATTAATTTCCCTTACAACCTGATGTTCA  350

seq1  AAAAAAAAAAAAATCTCAAACTTGGTCTGACAGTGAAACTCCACAGTCAA  400
      |||||||||||||||||                 ||||||||||||||||
seq2  AAAAAAAAAAAAATCTCNNNNNNNNNNNNNNNNNGAAACTCCACAGTCAA  400

seq1  CTGAAGGGGGGATCTCGAATCACCATGGAAACGCTTCCCAAGGTGTCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGGGGGATCTCGAATCACCATGGAAACGCTTCCCAAGGTGTCTTC  450

seq1  TCTCTGAGGGTACTTCCAGAAAAGTGTGACTGAGGAGAGAAGACACACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAGGGTACTTCCAGAAAAGTGTGACTGAGGAGAGAAGACACACCT  500

seq1  CAAGTGTGGGCCCCAGGCTGAATAAAAAGGAGAAAGTGGGTGGGGTGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTGGGCCCCAGGCTGAATAAAAAGGAGAAAGTGGGTGGGGTGCTA  550

seq1  GGATTTGTCTGTCTGTGCTTCCTGACTCCAGAAGCAGTGCAACCAGCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGTCTGTCTGTGCTTCCTGACTCCAGAAGCAGTGCAACCAGCTGC  600

seq1  CTCACACTCCTGCCCCGCCTTCCCTCAGACTGTAAGCCACCCCAAACACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACTCCTGCCCCGCCTTCCCTCAGACTGTAAGCCACCCCAAACACT  650

seq1  TTCGTTAAGTTGCTCTTGTCAGGTATTTTATTCCCCCAAATTAGAAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTTAAGTTGCTCTTGTCAGGTATTTTATTCCCCCAAATTAGAAAATT  700

seq1  AATGGATATAATTTATAGTGATAAAAGGTGTTCAGTTTCTTCAATGGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATATAATTTATAGTGATAAAAGGTGTTCAGTTTCTTCAATGGTAA  750

seq1  CATTGCATTTTCAAATACTTGGATTTTAAAACCACTCCTCATTTCCCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCATTTTCAAATACTTGGATTTTAAAACCACTCCTCATTTCCCCAG  800

seq1  CCCCATGCTTTTATTAGTCTTCCCACAATTTTGCCAGACATCACATATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGCTTTTATTAGTCTTCCCACAATTTTGCCAGACATCACATATTC  850

seq1  CATTTTAACAGAGACAAGCAATTGGAGAGGATGTGCTTCAGAGCTGACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAACAGAGACAAGCAATTGGAGAGGATGTGCTTCAGAGCTGACTA  900

seq1  TTG-TTTCTACCTTTGTCCATGAGTGTAATCCCTTCTATCAACTCATTAC  949
      ||| |||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTGTTTTCTACCTTTGTCAATGAGTGTAATCCCTTCTATCAACTCATTAC  950

seq1  AATTGGATATTGTAACAAGTGGGACTTGGCTATGCAGACTGGCTCAGGAG  999
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AATTGGATATTGT-ACAAGTGGGACTTGGCTATGCAGACTGGCTCAGGAG  999

seq1  CTGGGATATTGGTACTTA-CCAGGAACAAAGTACAAGCT-GTCAGGATAA  1047
      |||||||||||||||||| | ||||||||||||| |||| |||| |||| 
seq2  CTGGGATATTGGTACTTATCAAGGAACAAAGTAC-AGCTGGTCA-GATAC  1047

seq1  CATATC-TGAAAGCATGCGGTTATTGGCATAATAATA-ATCATCCTGGTT  1095
        | || ||||||||||||  ||||||||  |||||| |||||||||| |
seq2  ATTTTCTTGAAAGCATGCG--TATTGGCAATATAATATATCATCCTGGGT  1095

seq1  AATATGAAGGTTGAACTTTTAAGAATACTAGTGACATC  1133
       ||||||||| |  || ||| |||| ||||||||||||
seq2  TATATGAAGGGTTGACCTTTGAGAA-ACTAGTGACATC  1132

seq1: chr3_50556546_50557088
seq2: B6Ng01-001C21.g_67_609 (reverse)

seq1  CATATGGACTGTGGTAGACTTTTCCCAAACTCGAGTTCCTATTGACAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGACTGTGGTAGACTTTTCCCAAACTCGAGTTCCTATTGACAGTC  50

seq1  TTATCTTCCCCCATGGCTCGCAATCATGGCATCTAGACTCTTCATGTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTCCCCCATGGCTCGCAATCATGGCATCTAGACTCTTCATGTAAT  100

seq1  CTAGAATGTAAATGCTTTCCAGGTTTTCAATGGCTATTACTCGGATCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATGTAAATGCTTTCCAGGTTTTCAATGGCTATTACTCGGATCTAT  150

seq1  CAGAAGAATAATTATGGCTGTCCTTACCTTATAAACCATATTTCTTAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAATAATTATGGCTGTCCTTACCTTATAAACCATATTTCTTAGGT  200

seq1  ATTAAGAGGTGGAAATTAAAATAACTCCTTGATCCACTTAATGTAAATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAGGTGGAAATTAAAATAACTCCTTGATCCACTTAATGTAAATGG  250

seq1  GTTCCATGTTAGCCAACATGAAAAAACTAAGTTTCATTATACATCCATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATGTTAGCCAACATGAAAAAACTAAGTTTCATTATACATCCATCA  300

seq1  GTGCTCTTAGGTGGCCAGGTACGTCGTTAATAAGAAGTAATATTTTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTTAGGTGGCCAGGTACGTCGTTAATAAGAAGTAATATTTTGAAA  350

seq1  GGAGTCTTTTGTTTTCTTCTGAAAATAAGAAGTTTGGAATAGTCAGTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCTTTTGTTTTCTTCTGAAAATAAGAAGTTTGGAATAGTCAGTAAC  400

seq1  CCATGCCATAAACAGATGTACTATTATCTAGCATTGTATGTGCCATTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCATAAACAGATGTACTATTATCTAGCATTGTATGTGCCATTTAT  450

seq1  AGACCACAGAGTAAATTTAGGATAATTCGTAAAGATTTTCAGAATAGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCACAGAGTAAATTTAGGATAATTCGTAAAGATTTTCAGAATAGTAT  500

seq1  GTTATCAAAACACAAGCCAAGAACAGTCATGTAAAGGGAATTC  543
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCAAAACACAAGCCAAGAACAGTCATGTAAAGGGAATTC  543