BAC Information

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BAC

Clone NameB6Ng01-001D04
Chromosome3 (Build37)
Map Location 153,418,683 - 153,419,881
singlet/doubletsinglet
Overlap genenone
Upstream genePigk, Rpl29-ps1, St6galnac5, LOC100040750, St6galnac3, EG545578
Downstream geneAsb17, Msh4, Rabggtb, Acadm, Slc44a5, LOC100040980, Lhx8, LOC100040810, LOC100040829, Tyw3, Cryz, BC007180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001D04.bB6Ng01-001D04.g
ACCDH839588DH839589
length1,1861,236
definitionDH839588|Mus musculus domesticus DNA, BAC clone: B6Ng01-001D04, 5' end.DH839589|Mus musculus domesticus DNA, BAC clone: B6Ng01-001D04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctgatgtatctttcttctagagtgttgggagctattaagacaac
gctattgccctgacctctgaattgggcctctcccccgagaagaaaagggg
atcaaaagcgggccaccgacgcactgctctgagaacaaccacagattttt
ccagccctaagtcagcgccggatgtcctgacctcaagatgtaccctgata
ccgccaagttcctgcttccccgtgtaactgcctaaagaatgtgcaattct
attgctccatccctcctgctgataagtacctgtacttccccttttgcttg
tgcaattctactgccccatccttcctgctgaaaggcacttccccttttgc
ttgtgcatttaaaccttgggcctggctaatacagttgacaccttcatgct
tctcagactgtttacgtgtcgtttctcgcacttggtgtctgtccttcttt
tccccccatttggttcttaggagaaggtcccctcgagaccctcgaataac
tggacctgctggatgggtcataaaagtattacggaattgagtttatccag
aaagcctatctaagaaaccaaggtccctgtaagagcctccaaagttgctt
ggattcatcctgccttatcacacagactggctttgattcccactcacaag
agacactcagctgccttgtgaggcttccttctttgataggatagttaaag
cctacatcattgtacgttctggcactaaaaagccatttcagcaacttcat
gcgtggaccaaggctctgcatcccctgagacagcttgatcagttatggtc
catctggctagcagtaaaagaagcccagtggtgttaacaatagggaaatt
tattatcttgcaagggaagtctagagggagttagccactcagtgcctcat
ggatggtgagcttgcatcttctgaatgctgctggacctcccctctgccag
catcattcctggatgcatgggtgcagcttgcatcagcacactagggggaa
gaagcagaaccctcctccacagttctctcttaagggtacccctgggaacc
cctcagctcagccaccagccagactgtgtcacatgacatcactgaccaga
cttgagtgaggctagtctgttttgcagtcaggccaatgtatggactgaaa
tgtagacatgaagtactaactgggggggaggggggc
gaattccttccatacatgaggctggccttgaactcgaagatcctcccacc
tctgcttcctgagtactgggttaaaggtgtgaaccctcatgcttagcctt
ttaaaaaaagtgtgtagtgacatatgatggcatctcacgggagacgtact
gcatatgtgacagtaacaccatcactgttataatggaggtgaatattctt
ctggcctagtattgtccttgtatgttttaagaatcttcacatgtgccgga
catggtgtcgcactcctttaatcccagcactcaggaggcagaagcaggtg
gatttctgagttcgaggccagcctgttctacaaagtgagttcaaagacag
ccagggctacaccgagaaaccctgtctcaagaaacaaaacctcagactgg
ccctgggaagaatctttacatgtgttagatgcaaacacccgcttcccatc
accctcctgtcacatgctgggggccaactcttgagttcaaaaccagccga
aaccctcttaggatcattatggtcattgcacttttacaaactactgtaga
catatatataagagtgtgtgtgtgagtgtgtggctttagaaagtaacatt
tccctttcatcagctggagggcagtggccagagaaagagacagtaaaagc
agccacactgcttgctggccacagaagacgaagtcccaatgtgccttgaa
cactcacccaccagcttaggagttctgtcatgctcagaataacgtggttg
tacaacaagggcttctgtttctccctaatgagttgattatatcctgtcag
aagagtcataaaggccatcaaatgtcaagtccattttctcaaacatatta
ttttcatagcagctgggcctgactcactctcaaacagggcatcccattgt
tccttcaacagatatgctggagtgaaactcaataaaagagaaagggaggg
gcttagaggacacatgatcccgattcatgcagtttacatttgctgtttag
agccaatctattaggatggttggtcacttagtccacattagttcctaatg
ccggagaataagacatggattgtgttgtttcccccccaggactgtttctc
taggagggagtgcatggggttagatccctgctggatgttgataggaatgc
cccgaatgtgagaatgtgagacttacctctagcatctccagatgacatcc
ctgtgacatgctatcgtgtacattacgcatgtcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_153418683_153419881
seq2: B6Ng01-001D04.b_44_1228

seq1  GAATTCCTGATGTATCTTTCTTCTAAAAGTGTTGGGAGCTATTAAGACAA  50
      |||||||||||||||||||||||| | |||||||||||||||||||||||
seq2  GAATTCCTGATGTATCTTTCTTCT-AGAGTGTTGGGAGCTATTAAGACAA  49

seq1  CGCTATTGCCCTGACCTCTGAATTGGGCCTCTCCCCCGAGAAGAAAAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTATTGCCCTGACCTCTGAATTGGGCCTCTCCCCCGAGAAGAAAAGGG  99

seq1  GATCAAAAGCGGGCCACCGACGCACTGCTCTGAGAACAACCACAGATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAAAGCGGGCCACCGACGCACTGCTCTGAGAACAACCACAGATTTT  149

seq1  TCCAGCCCTAAGTCAGCGCCGGATGTCCTGACCTCAAGATGTACCCTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCCTAAGTCAGCGCCGGATGTCCTGACCTCAAGATGTACCCTGAT  199

seq1  ACCGCCAAGTTCCTGCTTCCCCGTGTAACTGCCTAAAGAATGTGCAATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCCAAGTTCCTGCTTCCCCGTGTAACTGCCTAAAGAATGTGCAATTC  249

seq1  TATTGCTCCATCCCTCCTGCTGATAAGTACCTGTACTTCCCCTTTTGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTCCATCCCTCCTGCTGATAAGTACCTGTACTTCCCCTTTTGCTT  299

seq1  GTGCAATTCTACTGCCCCATCCTTCCTGCTGAAAGGCACTTCCCCTTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAATTCTACTGCCCCATCCTTCCTGCTGAAAGGCACTTCCCCTTTTG  349

seq1  CTTGTGCATTTAAACCTTGGGCCTGGCTAATACAGTTGACACCTTCATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCATTTAAACCTTGGGCCTGGCTAATACAGTTGACACCTTCATGC  399

seq1  TTCTCAGACTGTTTACGTGTCGTTTCTCGCACTTGGTGTCTGTCCTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGACTGTTTACGTGTCGTTTCTCGCACTTGGTGTCTGTCCTTCTT  449

seq1  TTCCCCCCATTTGGTTCTTAGGAGAAGGTCCCCTCGAGACCCTCGAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCCATTTGGTTCTTAGGAGAAGGTCCCCTCGAGACCCTCGAATAA  499

seq1  CTGGACCTGCTGGATGGGTCATAAAAGTATTACGGAATTGAGTTTATCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACCTGCTGGATGGGTCATAAAAGTATTACGGAATTGAGTTTATCCA  549

seq1  GAAAGCCTATCTAAGAAACCAAGGTCCCTGTAAGAGCCTCCAAAGTTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCTATCTAAGAAACCAAGGTCCCTGTAAGAGCCTCCAAAGTTGCT  599

seq1  TGGATTCATCCTGCCTTATCACACAGACTGGCTTTGATTCCCACTCACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCATCCTGCCTTATCACACAGACTGGCTTTGATTCCCACTCACAA  649

seq1  GAGACACTCAGCTGCCTTGTGAGGCTTCCTTCTTTGATAGGATAGTTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACTCAGCTGCCTTGTGAGGCTTCCTTCTTTGATAGGATAGTTAAA  699

seq1  GCCTACATCATTGTACGTTCTGGCACTAAAAAGCCATTTCAGCAACTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACATCATTGTACGTTCTGGCACTAAAAAGCCATTTCAGCAACTTCA  749

seq1  TGCGTGGACCAAGGCTCTGCATCCCCTGAGACAGCTTGATCAGTTATGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGGACCAAGGCTCTGCATCCCCTGAGACAGCTTGATCAGTTATGGT  799

seq1  CCATCTGGCTAGCAGTAAAAGAAGCCCAGTGGTGTTAACAATAGGGAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGGCTAGCAGTAAAAGAAGCCCAGTGGTGTTAACAATAGGGAAAT  849

seq1  TTATTATCTTGCAAGGGAAGTCTAGAGGGAGTTAGCCACTCAGTGCCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATCTTGCAAGGGAAGTCTAGAGGGAGTTAGCCACTCAGTGCCTCA  899

seq1  TGGATGGTGAGCTTGCATCTTCTGAATGCTGCTGGACCTCCCCCTCTGCC  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGGATGGTGAGCTTGCATCTTCTGAATGCTGCTGGACCT-CCCCTCTGCC  948

seq1  AGCATCATTCCTGGATGCATGGGTGCAGGCTTGCATCAGCACCACTAGGG  1000
      ||||||||||||||||||||||||||| ||||||||||||| ||||||||
seq2  AGCATCATTCCTGGATGCATGGGTGCA-GCTTGCATCAGCA-CACTAGGG  996

seq1  GGAAG-AGCAGGAACCCTCCTCCACAGTTCTCTCTTAGGGGTACCCCTGG  1049
      ||||| |||| |||||||||||||||||||||||||| ||||||||||||
seq2  GGAAGAAGCA-GAACCCTCCTCCACAGTTCTCTCTTAAGGGTACCCCTGG  1045

seq1  GAACCCCTCCAGCCTCAGCCACCAGCCAGACTGTGTCACATGACCATCAC  1099
      |||||||| ||| |||||||||||||||||||||||||||||| ||||||
seq2  GAACCCCT-CAG-CTCAGCCACCAGCCAGACTGTGTCACATGA-CATCAC  1092

seq1  TGACCCAGACATGAGTGAAGGGCTAGTCTGTTTTTGCCAGTCAGGCCAAT  1149
      ||| |||||| |||||||  ||||||||||||||   |||||||||||||
seq2  TGA-CCAGACTTGAGTGA--GGCTAGTCTGTTTT--GCAGTCAGGCCAAT  1137

seq1  GTATGGACCTGAGATGTAGGCATGAAGTACATAGCTGGGGGGGAGGGGGG  1199
      ||||||| |||| |||||| |||||||||| || ||||||||||||||||
seq2  GTATGGA-CTGAAATGTAGACATGAAGTAC-TAACTGGGGGGGAGGGGGG  1185