BAC Information

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BAC

Clone NameB6Ng01-001F01
Chromosome3 (Build37)
Map Location 85,601,359 - 85,702,734
singlet/doubletdoublet
Overlap geneGlt28d2
Upstream geneLOC624889, Fbxw7, Dear1, LOC100042237, LOC100042125, Pet112l, 9930021J17Rik
Downstream geneLOC100042265, Gm1019, Sh3d19, Rps3a, LOC634201, Lrba, Mab21l2, EG667024, LOC100042319, Dclk2, EG625055
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001F01.bB6Ng01-001F01.g
ACCDH839675DH839676
length1,1121,120
definitionDH839675|Mus musculus domesticus DNA, BAC clone: B6Ng01-001F01, 5' end.DH839676|Mus musculus domesticus DNA, BAC clone: B6Ng01-001F01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,601,359 - 85,602,464)(85,701,598 - 85,702,734)
sequence
gaattcagggtgatgacttcctgcccgtgtatttgaactgagaagaagac
agggtcataaagaatcagcacactgggtcagccagtggcagcaggctgga
ctaaatcttaatgttgggagctgaggtttgtatacaccacagacccaaaa
gctgcctccagtttagtggggctcaggtctcttaggatcctttctctcag
cgccagcttctgcatcatgatgctgagatataagtttatgcccacagctc
ttccaggaacaggaaacctaccggccctaccacagcaccttctcaggggg
agcaggttatgaggtgaaatagaattaacaaagaaataaaaatgaatgcc
atagtactgatcttaaccaaaagcagaacacctctcgccaggtttaacca
cagtctacctctggcagtgcttagatgatctgccatctaggtaaggatct
ttcaaataaacttcaattttccttacaacatttccttacaaaatattggc
tcaattttcatccatgattacagtgttcatcataaaacttaatctgaaat
tacctcctgtctagatctttccctctttactgtctatttttatttaattg
ttgaagatcctattactccatgtatgtaagtgcattacctgcatggttgt
tggtgcaccaaatgcatgtttggtgcacacaaaggtcaaagaaaggtact
ggatcctctgagactcgttgtgagctaccatgttgtgctggaaactgaac
ccagggcctctgcaagaacaagtgtttctaaccactgagccaactcgtct
gtccttcctaaaccacagggagcgactactgcttctcaggactagtttct
aatgtaatttattcttcccattgtatcatataatgttatcacttcaaagg
tgattcatctatatgggtatttcaatgttggcataagtttcattgaatta
aatacacacagttgaccagaggaaggaaaaagatcaattcacttttggct
ttccttactcactttcagctttcttcttgcattagcagcccaggtgtaca
cgtgttttctatcagttaggattgatcctctattgcacttgggaaatgta
ttgactgtgtta
gaattcactgtggttaaatttttctgttgattatttctccttcaaaagct
aagcacagctgctgacttttaacctctccctgactttttaaggcaaacct
cttgaacctggatgtaggttttctaagtgtctgagttgaaaatgtggtag
tgtggcaagattcacagaagacttgatctgtgagaagtgtaagtgttctt
agaacggtgacagcagataaagcaaggaacaaaagtaggggtcgaccact
tagaggtaatcactgaccattacagtgaagagagagcgatggtggtgtgg
gcctgtggtaccagctattccatgggctaaggcagaaggattacttgaga
tcaagatacctgcctggacagcatagcaaggctctgtctgaaaaagaaaa
gcaaatctcagataccctgaaatcctgaaagaaagataaaaatcagaccc
attcatatcaggaggaggacaactgggagagtcctgggcacagggacaaa
gcaccccagaaaagtgcaagcacagagcccctttgtgtagaagagggaaa
taatctgccttggtattttaagttaataggttcatcttgaacgcttagaa
agataatttaattagccccaatcattattcagtcactaggaaatgtgcaa
gtctgtgtggctttctaaagagaaaattgagttggactaacttaaacctt
ttttatgataagagcagataatgatcagggcaaagacatatctatgcatt
catttaaggcattggagttttcctttctctgtggagattacttccttcag
ttgactgaataaaagtcttaaagacatcatctgggataatggaccaaaga
ttcatagagtctacagtgagatagaggcacaaggattcataattatcatg
ctactaagtttgacaccactgttggtagtacttttccataggaaatgttt
ctttttctttattttttcagacatggtttcactggcctatcctatactca
catgtagtcttagtggctttgactcacagagatctgctgcttgcttctga
gggctgggataggtgttgtgcaagaaatgtttcttttagattggaaatta
ttattataagccatgttgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_85601359_85602464
seq2: B6Ng01-001F01.b_44_1155

seq1  GAATTCAGGGTGATGACTTCCTGCCCGTGTATTTGAACTGAGAAGAAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGTGATGACTTCCTGCCCGTGTATTTGAACTGAGAAGAAGAC  50

seq1  AGGGTCATAAAGAATCAGCACACTGGGTCAGCCAGTGGCAGCAGGCTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCATAAAGAATCAGCACACTGGGTCAGCCAGTGGCAGCAGGCTGGA  100

seq1  CTAAATCTTAATGTTGGGAGCTGAGGTTTGTATACACCACAGACCCAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCTTAATGTTGGGAGCTGAGGTTTGTATACACCACAGACCCAAAA  150

seq1  GCTGCCTCCAGTTTAGTGGGGCTCAGGTCTCTTAGGATCCTTTCTCTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTCCAGTTTAGTGGGGCTCAGGTCTCTTAGGATCCTTTCTCTCAG  200

seq1  CGCCAGCTTCTGCATCATGATGCTGAGATATAAGTTTATGCCCACAGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAGCTTCTGCATCATGATGCTGAGATATAAGTTTATGCCCACAGCTC  250

seq1  TTCCAGGAACAGGAAACCTACCGGCCCTACCACAGCACCTTCTCAGGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGAACAGGAAACCTACCGGCCCTACCACAGCACCTTCTCAGGGGG  300

seq1  AGCAGGTTATGAGGTGAAATAGAATTAACAAAGAAATAAAAATGAATGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTTATGAGGTGAAATAGAATTAACAAAGAAATAAAAATGAATGCC  350

seq1  ATAGTACTGATCTTAACCAAAAGCAGAACACCTCTCGCCAGGTTTAACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTACTGATCTTAACCAAAAGCAGAACACCTCTCGCCAGGTTTAACCA  400

seq1  CAGTCTACCTCTGGCAGTGCTTAGATGATCTGCCATCTAGGTAAGGATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTACCTCTGGCAGTGCTTAGATGATCTGCCATCTAGGTAAGGATCT  450

seq1  TTCAAATAAACTTCAATTTTCCTTACAACATTTCCTTACAAAATATTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATAAACTTCAATTTTCCTTACAACATTTCCTTACAAAATATTGGC  500

seq1  TCAATTTTCATCCATGATTACAGTGTTCATCATAAAACTTAATCTGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTTCATCCATGATTACAGTGTTCATCATAAAACTTAATCTGAAAT  550

seq1  TACCTCCTGTCTAGATCTTTCCCTCTTTACTGTCTATTTTTATTTAATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCTGTCTAGATCTTTCCCTCTTTACTGTCTATTTTTATTTAATTG  600

seq1  TTGAAGATCCTATTACTCCATGTATGTAAGTGCATTACCTGCATGGTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGATCCTATTACTCCATGTATGTAAGTGCATTACCTGCATGGTTGT  650

seq1  TGGTGCACCAAATGCATGTTTGGTGCACACAAAGGTCAAAGAAAGGTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCACCAAATGCATGTTTGGTGCACACAAAGGTCAAAGAAAGGTACT  700

seq1  GGATCCTCTGAGACTCGTTGTGAGCTACCATGTTGTGCTGGAAACTGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTCTGAGACTCGTTGTGAGCTACCATGTTGTGCTGGAAACTGAAC  750

seq1  CCAGGGCCTCTGCAAGAACAAGTGTTTCTAACCACTGAGCCAACTCGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCCTCTGCAAGAACAAGTGTTTCTAACCACTGAGCCAACTCGTCT  800

seq1  GTCCTTCCTAAACCACAGGGAGCGACTACTGCTTCTCAGGACTAGTTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCCTAAACCACAGGGAGCGACTACTGCTTCTCAGGACTAGTTTCT  850

seq1  AATGTAA-TTATTCTTCCCATTGTATCATATAATGTTATCACTTCAAAGG  899
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAATTTATTCTTCCCATTGTATCATATAATGTTATCACTTCAAAGG  900

seq1  TGATTCATCTATATGGGTATTTCAATGTTGGCATAAG-TTCATTGAA-TA  947
      ||||||||||||||||||||||||||||||||||||| ||||||||| ||
seq2  TGATTCATCTATATGGGTATTTCAATGTTGGCATAAGTTTCATTGAATTA  950

seq1  AATACACACAGTTGACCAGAGGAAGAAAAAAGATTCAATCAC-TTTGGC-  995
      ||||||||||||||||||||||||| ||||||||  | |||| |||||| 
seq2  AATACACACAGTTGACCAGAGGAAGGAAAAAGATCAATTCACTTTTGGCT  1000

seq1  TTCCTTACTCACTTTCCAGCCTTCCTC-TGCATTAGCAGCCCA-GTGTAC  1043
      ||||||||||||||| |||| ||| || ||||||||||||||| ||||||
seq2  TTCCTTACTCACTTT-CAGCTTTCTTCTTGCATTAGCAGCCCAGGTGTAC  1049

seq1  ACGTG-TTTCTATCAG-TAGGAATGATTCTCTAATTGCACTTTGGGAAAA  1091
      ||||| |||||||||| ||||| |||| |||| |||||||||  || |||
seq2  ACGTGTTTTCTATCAGTTAGGATTGATCCTCT-ATTGCACTT--GGGAAA  1096

seq1  TGTA-TGACTGTGTTA  1106
      |||| |||||||||||
seq2  TGTATTGACTGTGTTA  1112

seq1: chr3_85701598_85702734
seq2: B6Ng01-001F01.g_67_1186 (reverse)

seq1  CACACACAT-GCTTATAATAATAATTTTCAAATCTTAAAAAAAGAAAACA  49
      |||| |||| |||||||||||||| |||| |||||    ||||| |||||
seq2  CACA-ACATGGCTTATAATAATAA-TTTCCAATCT----AAAAG-AAACA  43

seq1  TTTCTTTTGCAC-ACACCTTTAATCCCAGCCCTCAAGAGGCAAAGGCAAG  98
      ||||  |||||| ||||||   |||||||||||| ||| ||||  || ||
seq2  TTTC--TTGCACAACACCT---ATCCCAGCCCTC-AGAAGCAA--GC-AG  84

seq1  CAGATCTCTGTGAGTTCAAGGCCAACCTAGACTACAATGTGAGTTATAGG  148
      |||||||||||||| |||| ||| ||  ||||||| ||||||| ||||||
seq2  CAGATCTCTGTGAG-TCAAAGCC-ACTAAGACTAC-ATGTGAG-TATAGG  130

seq1  ATA-GCCAGTGAAACCATGTCTTGAAAAATAAAGAAAAAGAAACATTTCC  197
      ||| ||||||||||||||||||  ||||||||||||||||||||||||||
seq2  ATAGGCCAGTGAAACCATGTCTGAAAAAATAAAGAAAAAGAAACATTTCC  180

seq1  TATGGAAAAGTACTACCAACAGTGGTGTCAAACTTAGTAGCATGATAATT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAAAAGTACTACCAACAGTGGTGTCAAACTTAGTAGCATGATAATT  230

seq1  ATGAATCCTTGTGCCTCTATCTCACTGTAGACTCTATGAATCTTTGGTCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCCTTGTGCCTCTATCTCACTGTAGACTCTATGAATCTTTGGTCC  280

seq1  ATTATCCCAGATGATGTCTTTAAGACTTTTATTCAGTCAACTGAAGGAAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCCAGATGATGTCTTTAAGACTTTTATTCAGTCAACTGAAGGAAG  330

seq1  TAATCTCCACAGAGAAAGGAAAACTCCAATGCCTTAAATGAATGCATAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCCACAGAGAAAGGAAAACTCCAATGCCTTAAATGAATGCATAGA  380

seq1  TATGTCTTTGCCCTGATCATTATCTGCTCTTATCATAAAAAAGGTTTAAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTTTGCCCTGATCATTATCTGCTCTTATCATAAAAAAGGTTTAAG  430

seq1  TTAGTCCAACTCAATTTTCTCTTTAGAAAGCCACACAGACTTGCACATTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCCAACTCAATTTTCTCTTTAGAAAGCCACACAGACTTGCACATTT  480

seq1  CCTAGTGACTGAATAATGATTGGGGCTAATTAAATTATCTTTCTAAGCGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTGACTGAATAATGATTGGGGCTAATTAAATTATCTTTCTAAGCGT  530

seq1  TCAAGATGAACCTATTAACTTAAAATACCAAGGCAGATTATTTCCCTCTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATGAACCTATTAACTTAAAATACCAAGGCAGATTATTTCCCTCTT  580

seq1  CTACACAAAGGGGCTCTGTGCTTGCACTTTTCTGGGGTGCTTTGTCCCTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAAAGGGGCTCTGTGCTTGCACTTTTCTGGGGTGCTTTGTCCCTG  630

seq1  TGCCCAGGACTCTCCCAGTTGTCCTCCTCCTGATATGAATGGGTCTGATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGGACTCTCCCAGTTGTCCTCCTCCTGATATGAATGGGTCTGATT  680

seq1  TTTATCTTTCTTTCAGGATTTCAGGGTATCTGAGATTTGCTTTTCTTTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTTTCTTTCAGGATTTCAGGGTATCTGAGATTTGCTTTTCTTTTT  730

seq1  CAGACAGAGCCTTGCTATGCTGTCCAGGCAGGTATCTTGATCTCAAGTAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGAGCCTTGCTATGCTGTCCAGGCAGGTATCTTGATCTCAAGTAA  780

seq1  TCCTTCTGCCTTAGCCCATGGAATAGCTGGTACCACAGGCCCACACCACC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTGCCTTAGCCCATGGAATAGCTGGTACCACAGGCCCACACCACC  830

seq1  ATCGCTCTCTCTTCACTGTAATGGTCAGTGATTACCTCTAAGTGGTCGAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCTCTCTCTTCACTGTAATGGTCAGTGATTACCTCTAAGTGGTCGAC  880

seq1  CCCTACTTTTGTTCCTTGCTTTATCTGCTGTCACCGTTCTAAGAACACTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACTTTTGTTCCTTGCTTTATCTGCTGTCACCGTTCTAAGAACACTT  930

seq1  ACACTTCTCACAGATCAAGTCTTCTGTGAATCTTGCCACACTACCACATT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCTCACAGATCAAGTCTTCTGTGAATCTTGCCACACTACCACATT  980

seq1  TTCAACTCAGACACTTAGAAAACCTACATCCAGGTTCAAGAGGTTTGCCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTCAGACACTTAGAAAACCTACATCCAGGTTCAAGAGGTTTGCCT  1030

seq1  TAAAAAGTCAGGGAGAGGTTAAAAGTCAGCAGCTGTGCTTAGCTTTTGAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGTCAGGGAGAGGTTAAAAGTCAGCAGCTGTGCTTAGCTTTTGAA  1080

seq1  GGAGAAATAATCAACAGAAAAATTTAACCACAGTGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAATAATCAACAGAAAAATTTAACCACAGTGAATTC  1120