BAC Information

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BAC

Clone NameB6Ng01-001F03
Chromosome3 (Build37)
Map Location 123,670,353 - 123,775,743
singlet/doubletdoublet
Overlap genenone
Upstream geneUsp53, Myoz2, Synpo2, Sec24d, G430022H21Rik, Prss12, EG668804, Ndst3
Downstream geneLOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817, LOC668820
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001F03.bB6Ng01-001F03.g
ACCDH839679DH839680
length1,172979
definitionDH839679|Mus musculus domesticus DNA, BAC clone: B6Ng01-001F03, 5' end.DH839680|Mus musculus domesticus DNA, BAC clone: B6Ng01-001F03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,774,554 - 123,775,743)(123,670,353 - 123,671,334)
sequence
gaattcctctctttgtgccagatatcccatcttctaaccctgctttagct
cattggacagtcaacattttcttgacaggtgaatgcttttacatagtgta
caagagattatctctacaaaagtgcaaaactacattggcataccctttaa
atgaagataaaagactagcagtgaatatgcttattcctttctcgctctaa
tttagttttggagaaataacatgtggtcataaaatgctctttcttaggca
aaaagtttgagattgaaattaaaagtgtataccttttaacaaacacaaat
acttcctccattgggtaaaactttaatatctgtttttcttttgcccaata
agaaaatcagttggcaaatgttatatttttaaaaactttacaattatatt
atataaacataaataaaaattaaacaaggcattaagtaaagggtgcatgt
tgaactcttatttgaatcaattacttccctttgttaataaatggtcatac
taaaagaagaaaaaggaggagtgggaagacaaggggtggggggaagaggg
ggcagcagcagcctattggctgtttaacagaaaataaattagaggaggta
aaatgaaaatctatacattgggggatcatttcattagaaaaacaaggaca
tcagcatcaacactccacaaaattgcctgttcatcaagctgtgctgggat
aacttgataatcaagtgacaataaagaactcatacatcacaaaatctagg
taaatgtgaagcaaaaacaaaacaaaacagaaatttaaaaaactaccctc
aatataagacgtaggtctagatgaaattatggatctaatagcaatggact
tgtacttttacagaaatgtttcatagatgtaacaatgaggaaaagatagg
ttcggcattgtcaaatattaacctaggattgaattgaaacctcatgatga
agaacgatgttgctctagcagagcacctgcatctatctacactgcagttc
caggggacctcatccatcatcatctgcttgtcaggatgttaagataccct
cccccagatacctgaatatgcaaaaagtatatttagaaaaaggaataata
ataaacccttttttcaaagtaacccatagaaactgtagtgaaagcatctt
ttccgtgtatcatatgtaatct
gaattctccctttctgttcttgtttattgtctttcttttttgagactatt
gcctcatgtatttggcacgaatataaacaacagaaggataaccgaaaaga
aattaatccattacagttctaaatttaatttgcctatttttgtccttcac
attttcccatctggaaaaatttccattgctagctaaaaatatgatgttaa
ctttcaagtgtttttgtggtttgaatacagccccagtgaaattttattca
tatgttaggtggtattatttaatacgctttcaaaacctgtttgctgcaat
aatgatttatgcacagcaagctacacacaaaatacacatgcaaaacatac
tatatatagtactatctattgtgtagtggttaatatttatattatttgaa
gtaaaaaaaatatgcgcaaaggtcaatattctaattcgatacaaattttg
tgtgtgtttgcaaaattaagaaaattaactcaattgttgtgatatatatg
aaagaagttacagagacaaagtttggaactaaatcaaaaggatgggctat
ccagagactactccacctggggatccatcccataatcagccaccaaaccc
agacacctttgcatatgcctgcaagattttgatgaagggaccctggtata
gctgcctcgtttgaggctatgccagtgcctggcaaatacagaagtgaatg
ctcacagtcatctataagatggaacacagggcccccaatggagaagctag
agaaagcacccaaggagctgaaggggtctgcaaccctataggtggaacaa
caatatgaactaaccagtacccccagagctcgtgtctctagctgcatatg
tagcagaagatggcctagtcggccatcactgggaagagaggccccttggt
cttgcaaactttatatgcctcagtacaggggaatgccagggccagaagtg
ggatgggtgggtagggtagcatgcagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_123774554_123775743
seq2: B6Ng01-001F03.b_47_1218 (reverse)

seq1  AGATTACATA--GTACACTGACACAGCTGCCTCTCACTCCAGTTTCTTAG  48
      ||||||||||   ||||| || | || || || ||||| ||||||| || 
seq2  AGATTACATATGATACACGGA-AAAGATG-CTTTCACTACAGTTTC-TAT  47

seq1  TGGTCACCTTTGAAAAAAGTGTTTAATTTATTAATTCTTTTTCTAAAAAA  98
       ||| | |||||||||||| |||||  |||||| | ||||||||   |||
seq2  GGGTTA-CTTTGAAAAAAGGGTTTA--TTATTATTCCTTTTTCT---AAA  91

seq1  TAACATTTTTGCATATTCAGGTATCTGTGTGAGGGTATCTTTTACATCCT  148
      ||   |||||||||||||||||||||| | ||||||||| || |||||||
seq2  TATACTTTTTGCATATTCAGGTATCTGGGGGAGGGTATC-TTAACATCCT  140

seq1  GACAAGCAGATGATGGATGGATGAGGTCCCACTGGAACTGCAGTTGTAGA  198
      |||||||||||||| ||||||||||||||| |||||||||||| ||||||
seq2  GACAAGCAGATGAT-GATGGATGAGGTCCC-CTGGAACTGCAG-TGTAGA  187

seq1  TTAGATGCAGGTGCTTCTGCTAGAGCAACATCGTTCTTCATCAATGAGGT  248
       ||||||||||||| ||||||||||||||||||||||||||| |||||||
seq2  -TAGATGCAGGTGC-TCTGCTAGAGCAACATCGTTCTTCATC-ATGAGGT  234

seq1  TTCAATTCATTCCTAAGGTTAATATTTTGACAATGCCGAACCTATCTTTT  298
      ||||||||| |||| ||||||||| |||||||||||||||||||||||||
seq2  TTCAATTCAATCCT-AGGTTAATA-TTTGACAATGCCGAACCTATCTTTT  282

seq1  CCTCATTGTTACATCTATGAAACATTTCTGTAAAAGTACAAGTCCATTGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTGTTACATCTATGAAACATTTCTGTAAAAGTACAAGTCCATTGC  332

seq1  TATTAGATCCATAATTTCATCTAAGACCTACGTCTTATATTGAGGGTAGT  398
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TATTAGATCCATAATTTCATCT-AGACCTACGTCTTATATTGAGGGTAGT  381

seq1  TTTTTAAATTTCTGTTTTGTTTTTGTTTTTGCTTCACATTTACCTAGATT  448
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTTTTAAATTTCTGTTTTG-TTTTGTTTTTGCTTCACATTTACCTAGATT  430

seq1  TTGTGATGTATGAGTTCTTTATTGTCACTTGATTATCAAGTTATCCCAGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATGTATGAGTTCTTTATTGTCACTTGATTATCAAGTTATCCCAGC  480

seq1  ACAGCTTGATGAACAGGCAATTTTGTGGAGTGTTGATGCTGATGTCCTTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTGATGAACAGGCAATTTTGTGGAGTGTTGATGCTGATGTCCTTG  530

seq1  TTTTTCTAATGAAATGATCCCCCAATGTATAGATTTTCATTTTACCTCCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTAATGAAATGATCCCCCAATGTATAGATTTTCATTTTACCTCCT  580

seq1  CTAATTTATTTTCTGTTAAACAGCCAATAGGCTGCTGCTGCCCCCTCTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTATTTTCTGTTAAACAGCCAATAGGCTGCTGCTGCCCCCTCTTC  630

seq1  CCCCCACCCCTTGTCTTCCCACTCCTCCTTTTTCTTCTTTTAGTATGACC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCCCTTGTCTTCCCACTCCTCCTTTTTCTTCTTTTAGTATGACC  680

seq1  ATTTATTAACAAAGGGAAGTAATTGATTCAAATAAGAGTTCAACATGCAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTAACAAAGGGAAGTAATTGATTCAAATAAGAGTTCAACATGCAC  730

seq1  CCTTTACTTAATGCCTTGTTTAATTTTTATTTATGTTTATATAATATAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACTTAATGCCTTGTTTAATTTTTATTTATGTTTATATAATATAAT  780

seq1  TGTAAAGTTTTTAAAAATATAACATTTGCCAACTGATTTTCTTATTGGGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGTTTTTAAAAATATAACATTTGCCAACTGATTTTCTTATTGGGC  830

seq1  AAAAGAAAAACAGATATTAAAGTTTTACCCAATGGAGGAAGTATTTGTGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAACAGATATTAAAGTTTTACCCAATGGAGGAAGTATTTGTGT  880

seq1  TTGTTAAAAGGTATACACTTTTAATTTCAATCTCAAACTTTTTGCCTAAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAAAGGTATACACTTTTAATTTCAATCTCAAACTTTTTGCCTAAG  930

seq1  AAAGAGCATTTTATGACCACATGTTATTTCTCCAAAACTAAATTAGAGCG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCATTTTATGACCACATGTTATTTCTCCAAAACTAAATTAGAGCG  980

seq1  AGAAAGGAATAAGCATATTCACTGCTAGTCTTTTATCTTCATTTAAAGGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAATAAGCATATTCACTGCTAGTCTTTTATCTTCATTTAAAGGG  1030

seq1  TATGCCAATGTAGTTTTGCACTTTTGTAGAGATAATCTCTTGTACACTAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCAATGTAGTTTTGCACTTTTGTAGAGATAATCTCTTGTACACTAT  1080

seq1  GTAAAAGCATTCACCTGTCAAGAAAATGTTGACTGTCCAATGAGCTAAAG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGCATTCACCTGTCAAGAAAATGTTGACTGTCCAATGAGCTAAAG  1130

seq1  CAGGGTTAGAAGATGGGATATCTGGCACAAAGAGAGGAATTC  1190
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTAGAAGATGGGATATCTGGCACAAAGAGAGGAATTC  1172

seq1: chr3_123670353_123671334
seq2: B6Ng01-001F03.g_65_1043

seq1  GAATTCTCCCTTTCTGTTCTTGTTTATTGTCTTTCTTTTTTGAGACTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTTTCTGTTCTTGTTTATTGTCTTTCTTTTTTGAGACTATT  50

seq1  GCCTCATGTATTTGGCACGAATATAAACAACAGAAGGATAACCGAAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATGTATTTGGCACGAATATAAACAACAGAAGGATAACCGAAAAGA  100

seq1  AATTAATCCATTACAGTTCTAAATTTAATTTGCCTATTTTTGTCCTTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATCCATTACAGTTCTAAATTTAATTTGCCTATTTTTGTCCTTCAC  150

seq1  ATTTTCCCATCTGGAAAAATTTCCATTGCTAGCTAAAAATATGATGTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCCATCTGGAAAAATTTCCATTGCTAGCTAAAAATATGATGTTAA  200

seq1  CTTTCAAGTGTTTTTGTGGTTTGAATACAGCCCCAGTGAAATTTTATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAGTGTTTTTGTGGTTTGAATACAGCCCCAGTGAAATTTTATTCA  250

seq1  TATGTTAGGTGGTATTATTTAATACGCTTTCAAAACCTGTTTGCTGCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTAGGTGGTATTATTTAATACGCTTTCAAAACCTGTTTGCTGCAAT  300

seq1  AATGATTTATGCACAGCAAGCTACACACAAAATACACATGCAAAACATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTTATGCACAGCAAGCTACACACAAAATACACATGCAAAACATAC  350

seq1  TATATATAGTACTATCTATTGTGTAGTGGTTAATATTTATATTATTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATAGTACTATCTATTGTGTAGTGGTTAATATTTATATTATTTGAA  400

seq1  GTAAAAAAAATATGCGCAAAGGTCAATATTCTAATTCGATACAAATTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAAAATATGCGCAAAGGTCAATATTCTAATTCGATACAAATTTTG  450

seq1  TGTGTGTTTGCAAAATTAAGAAAATTAACTCAATTGTTGTGATATATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTTGCAAAATTAAGAAAATTAACTCAATTGTTGTGATATATATG  500

seq1  AAAGAAGTTACAGAGACAAAGTTTGGAACTAAATCAAAAGGATGGGCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGTTACAGAGACAAAGTTTGGAACTAAATCAAAAGGATGGGCTAT  550

seq1  CCAGAGACTACTCCACCTGGGGATCCATCCCATAATCAGCCACCAAACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGACTACTCCACCTGGGGATCCATCCCATAATCAGCCACCAAACCC  600

seq1  AGACACCTTTGCATATGCCTGCAAGATTTTGATGAAGGGACCCTGGTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCTTTGCATATGCCTGCAAGATTTTGATGAAGGGACCCTGGTATA  650

seq1  GCTGCCTCGTTTGAGGCTATGCCAGTGCCTGGCAAATACAGAAGTGAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTCGTTTGAGGCTATGCCAGTGCCTGGCAAATACAGAAGTGAATG  700

seq1  CTCACAGTCATCTATAAGATGGAACACAGGGCCCCCAATGGAGAAGCTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGTCATCTATAAGATGGAACACAGGGCCCCCAATGGAGAAGCTAG  750

seq1  AGAAAGCACCCAAGGAGCTGAAGGGGTCTGCAACCCTATAGGTGGAACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCACCCAAGGAGCTGAAGGGGTCTGCAACCCTATAGGTGGAACAA  800

seq1  CAATATGAACTAACCAGTACCCCCAGAGCTCGTGTCTCTAGCTGCATATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATGAACTAACCAGTACCCCCAGAGCTCGTGTCTCTAGCTGCATATG  850

seq1  TAGCAGAAGATGGCCTAGTCGGCCATCACTGGGAAGAGAGGCCCCTTGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGAAGATGGCCTAGTCGGCCATCACTGGGAAGAGAGGCCCCTTGGT  900

seq1  CTTGCAAACTTTATATGCCTCAGTACAGGGGAATGCCAGGGCCAAGAAGT  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTTGCAAACTTTATATGCCTCAGTACAGGGGAATGCCAGGGCC-AGAAGT  949

seq1  GGGATTGGGTGGGTAGGGGAGCATGGCAGGGG  982
      |||| ||||||||||||| ||||| |||||||
seq2  GGGA-TGGGTGGGTAGGGTAGCAT-GCAGGGG  979