BAC Information

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BAC

Clone NameB6Ng01-001F22
Chromosome3 (Build37)
Map Location 51,061,675 - 51,161,938
singlet/doubletdoublet
Overlap geneElf2
Upstream geneLOC639469, Slc7a11, EG621304, LOC100039667, Ccrn4l
Downstream geneA630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684, Mgst2, Maml3, LOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001F22.bB6Ng01-001F22.g
ACCDH839713DH839714
length1,1491,078
definitionDH839713|Mus musculus domesticus DNA, BAC clone: B6Ng01-001F22, 5' end.DH839714|Mus musculus domesticus DNA, BAC clone: B6Ng01-001F22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,061,675 - 51,062,838)(51,160,859 - 51,161,938)
sequence
gaattcccctttggtagtaatatctgcaagggaaaaatgactaaattaat
caaatgtactatcacatcttactcaataaaaccacacgtacatgtgacag
aaacatttacttattcctgtttatgagggctccttccacttggcctacac
ctaagattacagatttggtgacaatgaagttggtatgtcataccacagga
ccctgtgatggttaatattgactgttgatttgacaagatctagaagcacg
tagggctgactagattcagttgaagtgggaagaaccaagctatctgtgag
cagcactcttctcagaatctcagaccaaataaaaaggaagggcaagctaa
gtagcagcgttcaccgctgttgtcgggctgggaatgaggcgagtcctacc
atgtgcccttccctaggttgcctctgtcacatcagtaagaagtagctaat
atagctctgtgaccttgatgtgtccaaaacagttgtagcaccaacaagtg
aacctagactccctattagggcagtgctttatctccagcaccccacggcc
cttctcttacagaccaggccagcttccagctgtagactgaccctcctccc
tccacctcccaagtgatgagatcacagtacattccaccatggacaccttg
ttctctcccttaagaaaagcttaacatagacagaatactttattggtaat
agaagcaactctaatttgttacaaaaacaacctgactttatctggaacaa
cctgactttacctggaataatcatggaacatgtgaatactgactagtagc
tcatgcctgaaataccagcattgggaagctgggagaatagatgcaagctc
caagccagcctgggctacatagcaagaactgtctcaataaataaacacta
tcatgtgtacattggctatttttttcattttcgagataagtcatttacac
catttgcagggactaaaagtacattcactctggaaagtgtgttcttacag
atctcatgtagctcagctggcttcaccttactctgtaaaagagatgactt
gaaatcatcctcctacttcaattttcactgactacagcacgggcacttat
acctagtctgattaacttttacaaggctacagtaaacaatttctattct
gaattcaaaagaatctttaaaaatataaggtttgggtaaggcgaggaaga
aggaacggctcaacgctcgtgaaggctgaagtctcactgcccagcgcgcc
agaaggcttgaattcggttttttttttttttttttttcttttgagacagg
gtttctctgtgtagtcctggctatcccagaactcactctgtagaccaggc
tggcctcgaactcataaatccgcttgcctctgtcttccaagtgctaggat
taaaggcgtgcgccaccactccctgagctggaaaagtgtttcttgtccaa
aacctgctataacgtggaaaaatattttcactttaatagacaccattctt
ctgcgattctaatttgatccctgcaacacacggagtggaagaagcgatct
gagtactgaaagttttcctctgaagcgctcgtgcacacacacatacacac
acacacacacacacacacacacacgtgcacacaacacaaccataattatt
ataaaagttttaaaaggaaattatatatgtgtggtttgtgataggcatgg
tgacacttgcaaagctagggcaaggaggacatagggcgttaaggtcatat
caaattagaggccagcctgtaacacagtggcatctgtgggaatggagggt
gtctggaaactggcatgatggagagaggcagccacacccaccagggaaac
ctggctattcattcacctgggcccctgcttctcattcatcctgttttcca
ccggagggaagtcaagagcagagcctagctcaccatgcttgtctgttgct
gatcgtgaaactacattcctcaatcttatcttgaacactcttctccctca
gaacgtgagatacggtggctcaggggaaagcacttgtctccaagctggga
gttagactcccaggacttctactgggaaggagggaactgacttcatcaca
tattctggggcgcacagcacatccacttcaacaaataaaacattataaaa
aagttggcaacaattataataataaaaggtgaattcgctttatttgaaag
caagcaaacctgattttttttttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_51061675_51062838
seq2: B6Ng01-001F22.b_43_1191

seq1  GAATTCCCCTTTGGTAGTAATATCTGCAAGGGAAAAATGACTAAATTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTTTGGTAGTAATATCTGCAAGGGAAAAATGACTAAATTAAT  50

seq1  CAAATGTACTATCACATCTTACTCAATAAAACCACACGTACATGTGACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTACTATCACATCTTACTCAATAAAACCACACGTACATGTGACAG  100

seq1  AAACATTTACTTATTCCTGTTTATGAGGGCTCCTTCCACTTGGCCTACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTACTTATTCCTGTTTATGAGGGCTCCTTCCACTTGGCCTACAC  150

seq1  CTAAGATTACAGATTTGGTGACAATGAAGTTGGTATGTCATACCACAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATTACAGATTTGGTGACAATGAAGTTGGTATGTCATACCACAGGA  200

seq1  CCCTGTGATGGTTAATATTGACTGTTGATTTGACAAGATCTAGAAGCACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGATGGTTAATATTGACTGTTGATTTGACAAGATCTAGAAGCACG  250

seq1  TAGGGCTGACTAGATTCAGTTGAAGTGGGAAGAACCAAGCTATCTGTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCTGACTAGATTCAGTTGAAGTGGGAAGAACCAAGCTATCTGTGAG  300

seq1  CAGCACTCTTCTCAGAATCTCAGACCAAATAAAAAGGAAGGGCAAGCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTCTTCTCAGAATCTCAGACCAAATAAAAAGGAAGGGCAAGCTAA  350

seq1  GTAGCAGCGTTCACCGCTGTTGTCGGGCTGGGAATGAGGCGAGTCCTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGCGTTCACCGCTGTTGTCGGGCTGGGAATGAGGCGAGTCCTACC  400

seq1  ATGTGCCCTTCCCTAGGTTGCCTCTGTCACATCAGTAAGAAGTAGCTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCCCTTCCCTAGGTTGCCTCTGTCACATCAGTAAGAAGTAGCTAAT  450

seq1  ATAGCTCTGTGACCTTGATGTGTCCAAAACAGTTGTAGCACCAACAAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCTGTGACCTTGATGTGTCCAAAACAGTTGTAGCACCAACAAGTG  500

seq1  AACCTAGACTCCCTATTAGGGCAGTGCTTTATCTCCAGCACCCCACGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAGACTCCCTATTAGGGCAGTGCTTTATCTCCAGCACCCCACGGCC  550

seq1  CTTCTCTTACAGACCAGGCCAGCTTCCAGCTGTAGACTGACCCTCCTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTACAGACCAGGCCAGCTTCCAGCTGTAGACTGACCCTCCTCCC  600

seq1  TCCACCTCCCAAGTGATGAGATCACAGTACATTCCACCATGGACACCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCCCAAGTGATGAGATCACAGTACATTCCACCATGGACACCTTG  650

seq1  TTCTCTCCCTTAAGAAAAGCTTAACATAGACAGAATACTTTATTGGTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCCCTTAAGAAAAGCTTAACATAGACAGAATACTTTATTGGTAAT  700

seq1  AGAAGCAACTCTAATTTGTTACAAAAACAACCTGACTTTATCTGGAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAACTCTAATTTGTTACAAAAACAACCTGACTTTATCTGGAACAA  750

seq1  CCTGACTTTACCTGGAATAATCATGGAACATGTGAATACTGACTAGTAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTTTACCTGGAATAATCATGGAACATGTGAATACTGACTAGTAGC  800

seq1  TCATGCCTGAAATACCAGCATTGGGAAGCTGGGAGAATAGATGCAAGCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCCTGAAATACCAGCATTGGGAAGCTGGGAGAATAGATGCAAGCTC  850

seq1  CAAGCCAGCCTGGGCTACATAGCAAGAACTGTCTCAAATAAATAAACACT  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAAGCCAGCCTGGGCTACATAGCAAGAACTGTCTC-AATAAATAAACACT  899

seq1  ATCATGTGTACATTGGCTA-TTTTTTCATTTTCGAGATAAAGTCATTTAC  949
      ||||||||||||||||||| |||||||||||||||||| |||||||||||
seq2  ATCATGTGTACATTGGCTATTTTTTTCATTTTCGAGAT-AAGTCATTTAC  948

seq1  ACCATTTGCAGGGACTAAAAGTACATTCACTCTGGAAAGTGTGTTCTTAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTGCAGGGACTAAAAGTACATTCACTCTGGAAAGTGTGTTCTTAC  998

seq1  AGATCTCATTGTAGCTCAGGCTGGCTTCAACCTTACTCTGTAAAAGAGGA  1049
      |||||||| ||||||||| ||||||||| |||||||||||||||||| ||
seq2  AGATCTCA-TGTAGCTCA-GCTGGCTTC-ACCTTACTCTGTAAAAGA-GA  1044

seq1  TGACTTTGAAATCATCCTCCTAACTTCAATTTTCAACTGACTACAAGGCA  1099
      |||| |||||||||||||||| |||||||||||| ||||||||||  |||
seq2  TGAC-TTGAAATCATCCTCCT-ACTTCAATTTTC-ACTGACTACA--GCA  1089

seq1  CGGGCAC-TATACCCAGTCTGGGTTTAACTTTTTACAAGGCCTACAAGGT  1148
      ||||||| |||||| |||||  | ||||| |||||||||| |||||  ||
seq2  CGGGCACTTATACCTAGTCT--GATTAAC-TTTTACAAGG-CTACA--GT  1133

seq1  AAACAATTTCTATTCT  1164
      ||||||||||||||||
seq2  AAACAATTTCTATTCT  1149

seq1: chr3_51160859_51161938
seq2: B6Ng01-001F22.g_67_1144 (reverse)

seq1  AAAAAAAAAAAAAAATCAGGTTTGCTTGCTTTCTAATTAGAGCGTA-TCA  49
      ||||||||||||||||||||||||||||||||| || || |||| | |||
seq2  AAAAAAAAAAAAAAATCAGGTTTGCTTGCTTTC-AAATAAAGCGAATTCA  49

seq1  CCTGTTTTATTA-TATAATTGTTGCCATC-TTTTTATAATTGTTTATTTG  97
      ||  |||||||| |||||||||||||| | ||||||||||  ||||||||
seq2  CC--TTTTATTATTATAATTGTTGCCAACTTTTTTATAATGTTTTATTTG  97

seq1  TTTGAAGGTGGGGTGTGACTGTGCGCCCCAGATTGTGTGTGGAGGTCAGT  147
       ||||||   || |||| |||||||||||||| | ||||  || ||||||
seq2  -TTGAAG--TGGATGTG-CTGTGCGCCCCAGAATATGTGATGAAGTCAGT  143

seq1  TCCCTCCTTTCACAGTGGGAGTCCTGGGAGTCTAACT-CCAGCTTGGAGA  196
      ||||||| ||| |||| | |||||||||||||||||| ||||||||||||
seq2  TCCCTCC-TTCCCAGTAGAAGTCCTGGGAGTCTAACTCCCAGCTTGGAGA  192

seq1  CAAGTGCTTTTCCCCTGAGCCACCGTATCTCACGTTCTGAGGGAGAAGAG  246
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGC-TTTCCCCTGAGCCACCGTATCTCACGTTCTGAGGGAGAAGAG  241

seq1  TGTTC-AGATAAGCTTGAGGAATGTAG-TTCACGGTCAGCAACAGACAAG  294
      ||||| ||||||| ||||||||||||| |||||| |||||||||||||||
seq2  TGTTCAAGATAAGATTGAGGAATGTAGTTTCACGATCAGCAACAGACAAG  291

seq1  CATGGTGAGCTAGGCTCTGCTCTTGACTTCCTTCCGGTGG-AAACAGGAT  343
      ||||||||||||||||||||||||||||||| |||||||| |||||||||
seq2  CATGGTGAGCTAGGCTCTGCTCTTGACTTCCCTCCGGTGGAAAACAGGAT  341

seq1  GAATGAGAAGCAGGGGCCCAGGTGAATGAATAGCCAGGTTTCCCTGGTGG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGAAGCAGGGGCCCAGGTGAATGAATAGCCAGGTTTCCCTGGTGG  391

seq1  GTGTGGCTGCCTCTCTCCATCATGCCAGCTTCCAGACACCCTCCATTCCC  443
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTGTGGCTGCCTCTCTCCATCATGCCAGTTTCCAGACACCCTCCATTCCC  441

seq1  ACAGATGCCACTGTGTTACAGGCTGGCCTCTAATTTGATATGACCTTAAC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGCCACTGTGTTACAGGCTGGCCTCTAATTTGATATGACCTTAAC  491

seq1  GCCCTATGTCCTCCTTGCCCTAGCTTTGCAAGTGTCACCATGCCTATCAC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTATGTCCTCCTTGCCCTAGCTTTGCAAGTGTCACCATGCCTATCAC  541

seq1  AAACCACACATATATAATTTCCTTTTAAAACTTTTATAATAATTATGGTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACACATATATAATTTCCTTTTAAAACTTTTATAATAATTATGGTT  591

seq1  GTGTTGTGTGCACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTGTGCACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTG  641

seq1  TGTGCACGAGCGCTTCAGAGGAAAACTTTCAGTACTCAGATCGCTTCTTC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACGAGCGCTTCAGAGGAAAACTTTCAGTACTCAGATCGCTTCTTC  691

seq1  CACTCCGTGTGTTGCAGGGATCAAATTAGAATCGCAGAAGAATGGTGTCT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCGTGTGTTGCAGGGATCAAATTAGAATCGCAGAAGAATGGTGTCT  741

seq1  ATTAAAGTGAAAATATTTTTCCACGTTATAGCAGGTTTTGGACAAGAAAC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGTGAAAATATTTTTCCACGTTATAGCAGGTTTTGGACAAGAAAC  791

seq1  ACTTTTCCAGCTCAGGGAGTGGTGGCGCACGCCTTTAATCCTAGCACTTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCCAGCTCAGGGAGTGGTGGCGCACGCCTTTAATCCTAGCACTTG  841

seq1  GAAGACAGAGGCAAGCGGATTTATGAGTTCGAGGCCAGCCTGGTCTACAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAGAGGCAAGCGGATTTATGAGTTCGAGGCCAGCCTGGTCTACAG  891

seq1  AGTGAGTTCTGGGATAGCCAGGACTACACAGAGAAACCCTGTCTCAAAAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTTCTGGGATAGCCAGGACTACACAGAGAAACCCTGTCTCAAAAG  941

seq1  AAAAAAAAAAAAAAAAAAAACCGAATTCAAGCCTTCTGGCGCGCTGGGCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAACCGAATTCAAGCCTTCTGGCGCGCTGGGCA  991

seq1  GTGAGACTTCAGCCTTCACGAGCGTTGAGCCGTTCCTTCTTCCTCGCCTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACTTCAGCCTTCACGAGCGTTGAGCCGTTCCTTCTTCCTCGCCTT  1041

seq1  ACCCAAACCTTATATTTTTAAAGATTCTTTTGAATTC  1080
      |||||||||||||||||||||||||||||||||||||
seq2  ACCCAAACCTTATATTTTTAAAGATTCTTTTGAATTC  1078