BAC Information

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BAC

Clone NameB6Ng01-001I04
Chromosome3 (Build37)
Map Location 140,476,736 - 140,477,359
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC229883
Downstream geneLOC621343, 4930590L14Rik, Pdha2, Unc5c, LOC100039923
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001I04.b
ACCDH839810
length1,137
definitionDH839810|Mus musculus domesticus DNA, BAC clone: B6Ng01-001I04, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagagatggttatatattgagagcttatcttttaaatagaaaga
acattaatcagtttgttatggctgagcctaaatcagttgtctagcatgtg
tgaaaccctaggtttaatcctcatggttgaaaaacaaaacaaacaaacaa
acaaaaccacaacaagaaaatttcgccccaaatatgcctcccacccccca
aaaacagcccctattattttcttttgtgtttctggctctaaataatgctc
taaaatttattttggtttgttaaatatctccagatctttttaaaattaat
tatttatttcatttacttttcctatgatatccattaagtcccccaaaccc
tcttcacccactcccccacccacccactcccacttcttggccctggtgtt
cccctgtactgaaacatatatttcctgcacgacctttgggcctctctttc
aactgatggcccactacgccatcttctgatacatttgcagctaactgcct
gagcttgggggtggggggtactggatataattactcacttctcatataca
atggctccaaacatacattttaattcatgaaaaaatcctggaccaaagca
tgaataccaccaaccagtgtaacctcaaaatcctgtaactccatgatcag
tgtcaaaggcttacatggcagtgctgttataaataaggtgctcagccaga
ctgcttttcagcaacacgaaacgtagctctcatcataacttgcacgtgtc
cactgttgctatgagttgcttatttttcatgcaacatgcgcaccctgttt
taaaatgtctctctcaacatttgagcaccttactctctcattccctctgt
ctctcggtcattctgtctgtcactatctctttctcatgtcctcactctga
gaggaccgtttgctccccttccccatgaacctctttcataattaggtagc
ctggtgtgactcacataccatacttcgtcaatgctgccaggtccttttgc
tgactatctgaacactaacatttcagctttactgcttaggagctcatttc
tctcttgttgtggctgtgtgccttcctgcttctgctcctttggccataat
ccacagctcttggcatgtcagcattttaggcctactg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_140476736_140477359
seq2: B6Ng01-001I04.b_567_1177 (reverse)

seq1  CAGTAGGGCCCTTAAAATGCTGGACATGCC-AGAGCTGTGGAATATTGGC  49
      |||||||   | ||||||||| |||||||| ||||||||||| || ||||
seq2  CAGTAGG---CCTAAAATGCT-GACATGCCAAGAGCTGTGGATTA-TGGC  45

seq1  CAAAGAGAGCAGAAAGCAGGGAATGGAACCAGCCCAAGAAAGAGAGAAAT  99
      ||||| |||||| ||||| |||| | |  |||||  |  |||||||||||
seq2  CAAAG-GAGCAG-AAGCA-GGAAGGCACACAGCCACAACAAGAGAGAAAT  92

seq1  GAG-TTCTAAACAGTAAAGCTGAAATGGTAGTTGTTAAGATTAGTCAGCA  148
      ||| | |||| |||||||||||||||| ||| |||| ||| |||||||||
seq2  GAGCTCCTAAGCAGTAAAGCTGAAATGTTAG-TGTTCAGA-TAGTCAGCA  140

seq1  AAAGGTACCTGGGCAGGTGTTGGCGAAGTATGGTATGTGAGTCACACCAG  198
      ||||| |||| |||| |  ||| |||||||||||||||||||||||||||
seq2  AAAGG-ACCT-GGCA-GCATTGACGAAGTATGGTATGTGAGTCACACCAG  187

seq1  GCAACCTAATTACTGAAAGAGGTTTATGGGGGAAGGGGAGCAAACGGTCC  248
      || ||||||||| ||||||||||| || ||||||||||||||||||||||
seq2  GCTACCTAATTA-TGAAAGAGGTTCAT-GGGGAAGGGGAGCAAACGGTCC  235

seq1  TCTCAGAGTGAGGACATGAGAAAGAGATAGTGACAGACAGAATGACCGAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAGTGAGGACATGAGAAAGAGATAGTGACAGACAGAATGACCGAG  285

seq1  AGACAGAGGGAATGAGAGAG-AAGGTGCCGAAATGTTGAGAGAGACCTTT  347
      |||||||||||||||||||| |||||||  |||||||||||||||| |||
seq2  AGACAGAGGGAATGAGAGAGTAAGGTGCTCAAATGTTGAGAGAGACATTT  335

seq1  TAAAACAGGGTGCGCATGTTGCATGGGAAAATAAGCAACTCATAGCAACA  397
      |||||||||||||||||||||||| | |||||||||||||||||||||||
seq2  TAAAACAGGGTGCGCATGTTGCAT-GAAAAATAAGCAACTCATAGCAACA  384

seq1  GTGGACATGTGCAAGTTATGATGAGAGCTACGTTTTGTGTTGCTGAAAAG  447
      ||||||| ||||||||||||||||||||||||||| ||||||||||||||
seq2  GTGGACACGTGCAAGTTATGATGAGAGCTACGTTTCGTGTTGCTGAAAAG  434

seq1  CAGTCTGGCTGAGCACCTTATTTATAACAGCACTGCCATCTAAGCCTTTG  497
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CAGTCTGGCTGAGCACCTTATTTATAACAGCACTGCCATGTAAGCCTTTG  484

seq1  GCACTGATCATGGAATTACAGGATTTGGAGGTTACACTGGTTGGTGGTAT  547
       ||||||||||||| ||||||||||| |||||||||||||||||||||||
seq2  ACACTGATCATGGAGTTACAGGATTTTGAGGTTACACTGGTTGGTGGTAT  534

seq1  TCCTGCTTTGGTCCAGGATTTTTTCATGAATTAAAATGTATGTTTTGTGC  597
      || |||||||||||||||||||||||||||||||||||||||||| | ||
seq2  TCATGCTTTGGTCCAGGATTTTTTCATGAATTAAAATGTATGTTTGGAGC  584

seq1  CATTGTATATCGGAAGTGTGTAATTAT  624
      ||||||||||  |||||| ||||||||
seq2  CATTGTATATGAGAAGTGAGTAATTAT  611