BAC Information

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BAC

Clone NameB6Ng01-001M17
Chromosome3 (Build37)
Map Location 134,996,660 - 134,996,846
singlet/doubletsinglet
Overlap geneC80638
Upstream genePpia-ps3_1390.1, LOC100039234, Tacr3, LOC229837, LOC100039290, EG620439, Cenpe, Bdh2
Downstream gene4933425K02Rik, Zcd2, Ube2d3, Manba, LOC668745, Nfkb1, ENSMUSG00000045520, Slc39a8, LOC100039350, LOC383923, Bank1, LOC100039477, LOC668868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001M17.bB6Ng01-001M17.g
ACCDH840016DH840017
length1,273536
definitionDH840016|Mus musculus domesticus DNA, BAC clone: B6Ng01-001M17, 5' end.DH840017|Mus musculus domesticus DNA, BAC clone: B6Ng01-001M17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaacaaaaccatccaggatctaaaagtggatatagaaacaataaa
gaaatcacaaaggaagacaactctggagaaaagaaaaaaaaaaaaaaact
aggaaagaagtcaggagccatatgtaagcatcaccaaagaatacaagaga
tagaagagagaatctcaggtgctgacgataccatagaaaacattgaagca
acagtcagagaaaatgtgaaatacaaaaagctcctaacccaaaacatcaa
ggaaattcaggatacaatgaaaataccaaacctaaggataataggtatac
aagagagtgaagatttctaacttaaaaggccagtaaatatcttcaacaat
attaaagaagaaaacttccctagcctaaagtaagggatgcccatgaacac
ataagaagcctatagaacacctataggaccagaaaaaaaattccccctgt
cacataataatcaaaacaccaaatgcacaaaacaaagaaagaatattaaa
agcagtaagggaaaaagggtcaaaaacatataaaggaagacgtatcagaa
ttacaccagagaccatgaaagcaggaagatcctggacatatgctctaaga
gaacacaaatgccagcacaggctactatacacagaaagacatagatagag
aaaccaaggtattctatgacaacaccaaatttacacaatatctttccaca
aatccatcccttcaaaggataataatgaagggaaaactccaacacaagga
gagaaactatgccctagaaaagcaagaaaataacctttcaacaaacctaa
aagaagataaccacatgaacaaactccaactctaacaacaaaaataacag
gaagcaacaattacttttccttaatatctcttaatatcaattgactcaat
tccccaataaaacgacatagactaacacactggctacacaacaggaccca
attttgcattcaggaaacccactcagtgacaaagacagacactacctcag
agtaaaagactgaaaataacttttctaatcaaatagtcccagaaacagct
ggagtagctattctatatcgataaatcgacttcaatcaaagttatcaaaa
agataagggtgatgcttcatactcatcaagaataaaatctccaagatgaa
ccttcttattctgaattttgtttctcttatgcagggcaccaatccgtatg
accttacctagcccaggtcacactggctccactacatatatacatgtgtg
agaagagattttacatcctcgat
gaattctcattttagaaaaggcattagtttggatagcctctgcattaagg
atgcagacttttgtccacatcttctctcagctctgtgaccccatctggtg
cagacctgtgcaggccctgggcatgctgcctcagtctctgggagttcata
cgtggaccagtcctgttgtatcctatatcctctctagcccttaaaatctt
tttgccttatctttggtaaggtgtactgaaccctaagggaagggatttca
tccactctcttaggtctcttgctctctgtgaattgtccagttgtaacttt
atggatttgtttccatcaactagggaacaaataggagaaagattctctga
tgatagctgaagaagatgctggtctatgtatgttgtgttttataaaacag
cactgtgtggtagtgggtcttggttcgccctaccaaggtgtccccctgaa
caatgaagccatggagaacctaagtctaatataaaagggagtttatttgg
aacctggggaaagggtagaggcagaagagagggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_134996660_134996846
seq2: B6Ng01-001M17.g_449_605

seq1  ATGTTGTGTTTTATAAAATGGCA----GAGGGGGTGCCTCAGGG--GGCC  44
      ||||||||||||||||||  |||    | ||  |||  ||  ||   |||
seq2  ATGTTGTGTTTTATAAAACAGCACTGTGTGGTAGTGGGTCTTGGTTCGCC  50

seq1  CTGCCAAAGTGTCCCTTTGAACAATCAAGCCATGG-GA---CAGGCCTTC  90
      || |||| |||||||  |||||||| ||||||||| ||    | | ||  
seq2  CTACCAAGGTGTCCCCCTGAACAATGAAGCCATGGAGAACCTAAGTCTAA  100

seq1  TACAGAA-GAAGTTTATTTGAGACCTGGAGGAGGGGTAGAGGCAGAGGAG  139
      || | || | ||||||||||  |||||| | | |||||||||||||  ||
seq2  TATAAAAGGGAGTTTATTTGGAACCTGGGGAAAGGGTAGAGGCAGA--AG  148

seq1  GGAGGAAGACAGAGAAGGACAGAGAGAGAGAGAGAGGAGAGAGGGAGA  187
       |||| |||                                       
seq2  AGAGGGAGA---------------------------------------  157