BAC Information

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BAC

Clone NameB6Ng01-002C06
Chromosome3 (Build37)
Map Location 106,289,456 - 106,290,578
singlet/doubletsinglet
Overlap geneDennd2d
Upstream geneKcnd3, Ddx20, 6530418L21Rik, Rap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik
Downstream geneCept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266, Kcna3, AI504432, Kcna2, Kcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002C06.bB6Ng01-002C06.g
ACCDH840257DH840258
length1,2141,113
definitionDH840257|Mus musculus domesticus DNA, BAC clone: B6Ng01-002C06, 5' end.DH840258|Mus musculus domesticus DNA, BAC clone: B6Ng01-002C06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctccagacatagataagaattaacaaggcctaagaattccaaggt
tcatgacactactttattcctgaagccaggcaagagtttataccccccta
gcccaattaacgctaaggtgtgaaactcttgcctggcacagggctgatcc
gaagcaggtgttaatctctaatgtaaacatagtccttttgaagtcactcc
tcttgcatctggagggatactaatccctagcgtaaacatgtatctggttc
ctgcaaattctttttgtaggcactcctcttgcacctggaaaacttcaatg
taccatatctgttatgttttacaatttatgatattcactgtaatataatt
agtctaagctcaaccagaaaattacattcagatccaacatcactcttgcg
tgttcgtctgtttgtcaccccatccgactctttgcccatctgcttaagag
atcccgtttcacgcagacatagggacccagagggtctgcggcaaattaaa
aataaataaattttaaaaagggatgttcagcccctgcttgctctcttact
tatctctcactcctttgttctcttacttctcacttctctcactcctctct
cctctttcctttctctttgtcttctctcctctcctcacccccctctctct
ctgtctctgtctctgtctctctctctctctctctctctctctctctctct
ctctctcccctaccttctctctttccccctaactttctacaataaagctc
taaaaccatagaatgtttctgcacatcaaggcccactgcgcttggaggat
ggaacaggaattctcctaaagagccatttctaatctcccattagaaggcc
ttcctgtgctccagtcaagatctaactgcactcactcttgcaggtgttgg
gaacctcttccctcatccctctctccataatcccagtggctttagcaagg
tagctcggggaatcctaggtagggctgccccttggcaccactaagaggtg
ggtcagagtctggatgccacccagggctggagtgcaagggtatggcagtt
ctctcacacctgaaggaccgagaaataggtaaactctgggaaggtgtggc
ttttcctccaccctctccccaggggccctcttagttccacaaggcctgga
atggaattattcggcattactcctcggggatttcctcttttgtttagagc
acgtgcgagtggct
gaattcagtatcctgaggatttacatattcaaaaagaagattagaaaggt
cagctggaccaacctcctgagagggtggcatcagagagaaaccacatcat
agaaaagaagcaacccttccagttgctaaaccttctaacaagagaggctg
gtaagaaggggacattacgcctcacccagtgcatgatcaggcaagaagag
atctaatactttgggagactgatcttaggctgtgcttgagtcgggggcct
gcttgattctctaccacacaaccaggaaggccatcccttcttagtagttc
cagcagaagctgagttttcctgtaggaaaaggtgactgaggtggaatttg
gaagaactgaaggtttcccacaggggcaagagcattgtttccctgctcca
gagtttcagtcagtccttcacaaagcagtcagacctagattctctgggtg
attacagaaaactagggctgggctacaaaggaaactagagcagtgagctc
agggctagagcccaggcagcgtggtaagacatagaactcctctattacct
tttaaacacaccttcgtcctcccacctccatcctcaggccccacttctcc
ctccatccttaccttgggaaactggtaagtgatcgtgggctcatagtcat
cccctaaacgcttttttctttaaagaaacaacaagaaggtattcaaagaa
gtgctggcctccagcaaagctagatggagaatgctcctggatcctttctg
gctctgtgacagcttccccaggattgttctgggattgtcctaaaatggag
atgcaagggtctcttgagtattctttccactcctccattctgtagtgcga
gcgagaatctgggcaacaaccatgcctcaaggctacagtgccaagcctga
ccaggcaccaccaggcaggatcagagccaagggggcaatttccatacctg
ccctgggaaacttgaaactgggggagtgacacaggaagaaagaaaacact
gatttagaccgaggagccatgccatgctgtggagttcttgaggcctgatg
ctgacactgtatagtctgctgatgcacagtctggtttttgggggcctgag
taaattgcactaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_106289456_106290578
seq2: B6Ng01-002C06.g_68_1180 (reverse)

seq1  TTAGTGCAAATTTACTCAGGGCTCACAAAATACCCAGAACTGTTGCATCA  50
      ||||||| |||||||||||| | |  ||||   |||| |||| |||||||
seq2  TTAGTGC-AATTTACTCAGGCCCCCAAAAA---CCAG-ACTG-TGCATCA  44

seq1  GGCAGACTATACAGTGTCAGGCATCAGGCCTCCAAGAACCTCCACAGCAT  100
       |||||||||||||||||| ||||||||||| |||||| |||||||||||
seq2  -GCAGACTATACAGTGTCA-GCATCAGGCCT-CAAGAA-CTCCACAGCAT  90

seq1  GGCATGGCTCCTCGGTTCTACATCAGTGTTTTCTTTTCTTCCTGTGTCAC  150
      ||||||||||||||| |||| |||||||||||| ||||||||||||||||
seq2  GGCATGGCTCCTCGG-TCTAAATCAGTGTTTTC-TTTCTTCCTGTGTCAC  138

seq1  T-CCACAGTTTCAAGTTTCCCAGGGCAGGTATGGAAATTGCCCCCTTGGC  199
      | || |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCAGTTTCAAGTTTCCCAGGGCAGGTATGGAAATTGCCCCCTTGGC  188

seq1  TCTGATCCTGCCTGGTGGTGCCTGGTCAGGCTTGGCACTGTAGCCTTGAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCCTGCCTGGTGGTGCCTGGTCAGGCTTGGCACTGTAGCCTTGAG  238

seq1  GCATGGTTGTTGCCCAGATTCTCGCTCGCACTACAGAATGGAGGAGTGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTTGTTGCCCAGATTCTCGCTCGCACTACAGAATGGAGGAGTGGA  288

seq1  AAGAATACTCAAGAGACCCTTGCATCTCCATTTTAGGACAATCCCAGAAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATACTCAAGAGACCCTTGCATCTCCATTTTAGGACAATCCCAGAAC  338

seq1  AATCCTGGGGAAGCTGTCACAGAGCCAGAAAGGATCCAGGAGCATTCTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGGGGAAGCTGTCACAGAGCCAGAAAGGATCCAGGAGCATTCTCC  388

seq1  ATCTAGCTTTGCTGGAGGCCAGCACTTCTTTGAATACCTTCTTGTTGTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGCTTTGCTGGAGGCCAGCACTTCTTTGAATACCTTCTTGTTGTTT  438

seq1  CTTTAAAG-AAAAAGCGTTTAGGGGATGACTATGAGCCCACGATCACTTA  498
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGAAAAAAGCGTTTAGGGGATGACTATGAGCCCACGATCACTTA  488

seq1  CCAGTTTCCCAAGGTAAGGATGGAGGGAGAAGTGGGGCCTGAGGATGGAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTCCCAAGGTAAGGATGGAGGGAGAAGTGGGGCCTGAGGATGGAG  538

seq1  GTGGGAGGACGAAGGTGTGTTTAAAAGGTAATAGAGGAGTTCTATGTCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGGACGAAGGTGTGTTTAAAAGGTAATAGAGGAGTTCTATGTCTT  588

seq1  ACCACGCTGCCTGGGCTCTAGCCCTGAGCTCACTGCTCTAGTTTCCTTTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGCTGCCTGGGCTCTAGCCCTGAGCTCACTGCTCTAGTTTCCTTTG  638

seq1  TAGCCCAGCCCTAGTTTTCTGTAATCACCCAGAGAATCTAGGTCTGACTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCAGCCCTAGTTTTCTGTAATCACCCAGAGAATCTAGGTCTGACTG  688

seq1  CTTTGTGAAGGACTGACTGAAACTCTGGAGCAGGGAAACAATGCTCTTGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGAAGGACTGACTGAAACTCTGGAGCAGGGAAACAATGCTCTTGC  738

seq1  CCCTGTGGGAAACCTTCAGTTCTTCCAAATTCCACCTCAGTCACCTTTTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGGGAAACCTTCAGTTCTTCCAAATTCCACCTCAGTCACCTTTTC  788

seq1  CTACAGGAAAACTCAGCTTCTGCTGGAACTACTAAGAAGGGATGGCCTTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGGAAAACTCAGCTTCTGCTGGAACTACTAAGAAGGGATGGCCTTC  838

seq1  CTGGTTGTGTGGTAGAGAATCAAGCAGGCCCCCGACTCAAGCACAGCCTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTGTGTGGTAGAGAATCAAGCAGGCCCCCGACTCAAGCACAGCCTA  888

seq1  AGATCAGTCTCCCAAAGTATTAGATCTCTTCTTGCCTGATCATGCACTGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGTCTCCCAAAGTATTAGATCTCTTCTTGCCTGATCATGCACTGG  938

seq1  GTGAGGCGTAATGTCCCCTTCTTACCAGCCTCTCTTGTTAGAAGGTTTAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGCGTAATGTCCCCTTCTTACCAGCCTCTCTTGTTAGAAGGTTTAG  988

seq1  CAACTGGAAGGGTTGCTTCTTTTCTATGATGTGGTTTCTCTCTGATGCCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGAAGGGTTGCTTCTTTTCTATGATGTGGTTTCTCTCTGATGCCA  1038

seq1  CCCTCTCAGGAGGTTGGTCCAGCTGACCTTTCTAATCTTCTTTTTGAATA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCAGGAGGTTGGTCCAGCTGACCTTTCTAATCTTCTTTTTGAATA  1088

seq1  TGTAAATCCTCAGGATACTGAATTC  1123
      |||||||||||||||||||||||||
seq2  TGTAAATCCTCAGGATACTGAATTC  1113