BAC Information

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BAC

Clone NameB6Ng01-002D09
Chromosome3 (Build37)
Map Location 41,059,146 - 41,059,737
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002D09.b
ACCDH840302
length627
definitionDH840302|Mus musculus domesticus DNA, BAC clone: B6Ng01-002D09, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtttagctctgagccccatcttttaagagggttatttgatt
ttctggtgtccatcctcttgagttctttatatatattggatattagaccc
tatctgatttgagataggtaaagatcctttcccaatctgttggtggcctt
tttgtcttattgacagtgtcttttgccttacagaagctttgcaattttat
taggtcccatttgtcagtgatcggtcttacagcacaagccattgctgttc
tagtcaggaatttttcccctgtacccatatcttctaggggtttccctatt
ttctcctcaataagtttcagtgtctctggttttatgtggagttccttaat
ccacttagatttgaccttagtacaaggagataggaatggatcaattcgca
ttcttctacatgataaccgccagttgtgccagcaccatttgttgaaaatg
ctgtcttttttccactggatggttttagctcccttgtcaaagatcaagtg
accataggtgtgtgggttcatttttgggtcttcaattctattccattggt
ctacttgtctgtcactataccagtaccatgcaatttttatcacaattgct
ctatagtacagctttgggaaggcatgg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059146_41059737
seq2: B6Ng01-002D09.b_47_638 (reverse)

seq1  GTGATAAAAACTGCATGGTACTGGTATAGTGACAGACAAGCAGACCAATG  50
      |||||||||| ||||||||||||||||||||||||||||| |||||||||
seq2  GTGATAAAAATTGCATGGTACTGGTATAGTGACAGACAAGTAGACCAATG  50

seq1  GAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATGGTCACTTGA  100
      |||||||||||||||| || ||| ||| ||||||||||||||||||||||
seq2  GAATAGAATTGAAGACCCAAAAATGAACCCACACACCTATGGTCACTTGA  100

seq1  TCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTC  150
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTC  150

seq1  AACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAAT  200
      ||||||||||||||||||||||||  ||||||||||||||||||||||||
seq2  AACAAATGGTGCTGGCACAACTGGCGGTTATCATGTAGAAGAATGCGAAT  200

seq1  TGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGG  250
      ||||||| ||||||||||||||||||||||||||||||||||||| ||||
seq2  TGATCCATTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATTAAGG  250

seq1  AACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGG  300
      ||| |||||||||||||||||||||||||||||| ||||||||| | |||
seq2  AACTCCACATAAAACCAGAGACACTGAAACTTATTGAGGAGAAAATAGGG  300

seq1  AAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGC  350
      |||  ||| ||||||||||  ||||||||||||||||||  |||||||||
seq2  AAACCCCTAGAAGATATGGGTACAGGGGAAAAATTCCTGACTAGAACAGC  350

seq1  AATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAAC  400
      |||||||||||||||||||  ||  |  |||||||||||||| || ||| 
seq2  AATGGCTTGTGCTGTAAGACCGATCACTGACAAATGGGACCTAATAAAAT  400

seq1  TGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGG-CA  449
      ||||||||||||| |||||||||||||| |||||||||||||||||| ||
seq2  TGCAAAGCTTCTGTAAGGCAAAAGACACTGTCAATAAGACAAAAAGGCCA  450

seq1  CCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACT  499
      |||||||||||||||||||||||||||||||  |||||||||| ||| ||
seq2  CCAACAGATTGGGAAAGGATCTTTACCTATCTCAAATCAGATA-GGGTCT  499

seq1  AATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAA  549
      |||||||||||||||| |||||||||||| | ||||  ||||||||||||
seq2  AATATCCAATATATATAAAGAACTCAAGAGGATGGACACCAGAAAATCAA  549

seq1  ATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  592
      |||||||  |||||| |||||||||||||||||||||||||||
seq2  ATAACCCTCTTAAAAGATGGGGCTCAGAGCTAAACAAAGAATT  592