BAC Information

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BAC

Clone NameB6Ng01-002E01
Chromosome3 (Build37)
Map Location 141,953,676 - 142,078,648
singlet/doubletdoublet
Overlap genePdlim5
Upstream geneUnc5c, LOC100039923, Bmpr1b, Gabarapl2-ps3
Downstream geneGbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2, LOC100040053, LOC100039883, 1700001N15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002E01.bB6Ng01-002E01.g
ACCDH840331DH840332
length8361,149
definitionDH840331|Mus musculus domesticus DNA, BAC clone: B6Ng01-002E01, 5' end.DH840332|Mus musculus domesticus DNA, BAC clone: B6Ng01-002E01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,077,817 - 142,078,648)(141,953,676 - 141,954,537)
sequence
gaattcacttacacaaactcaaatattgtggcttaagatagatgctagga
acctttaaaatgaagcttacaaaaccgaggttctatggcatgtttaggtg
aagatgaatttggctttcttttctttggagagtttctttacgtgcttgta
tttttaggcatcgctgcatagtggaaagaacactggacctgacgtcagga
gctctgggttctatttctgactgttgatcttctgggaagccatgggggag
acacgttattaaagagagcattacttacttgagtcacagagcttagcaga
gggctaccagctcagtggaggacagtgttcatagcagagggttcctcaga
actctgtcttctcttacgtcagcatcacgtagctcttcctttttggctta
aggacctttggagggaggtgtaggggtattattacattaatattgaaagg
aaatggaaaaaaggccctagcaatgttgataataattggttactaattaa
attattattctgaataataattaatataaatgattatctcgagagaaaga
gatgatgattggagacttactgctacttcaagacacttggaaactttcac
ctccacaatgactctgggggacctcccaccaacaataatactgctctgaa
ccccattctttgcctcagaacgtcatttttctccatcctgtttcttcatc
aggaagctagatgcctgcctttacccggcgcatcccttgtatctttcctt
ctcttctttatctactgcttccttttctgttctgaatggattgctttact
ccacaagagtgtagtaactaatggccattatttaac
gaattcactaggaattcagtaagaatgttatctattcagtaacattcaaa
tttacttctagtagagatgtgaaactaattaggcattataaagaaggagc
tagaacagctcagggctagtctgcagagtgattacttaggacagtagcca
gtcttacccaaacaagggaatacacaatggcctagctaataggtgggttt
accatgtaagagttagggaatcccactgagaggaatcttcactacagcct
ggtatagcaggctacattgtatattacaagttggtgaattcttctgacaa
atggagattctccatagatacttaaaagaacagccaagttacactcatac
aagaatttatcagcctaggaaataggaggtttgtggtattgcaattttca
tgagaaggtctgctagagcagaaccccctggtgctagctttcacaaggct
caaaggagtagcacaaattgtgatgagggtgtgaaatccttacctgtcat
tagctgaccttaggcagagctgttttatctttactgtaaatattacctgg
ttcctgtaagtccttcaaaagtcattcctttgttttgtgtcaggtaactt
caatgtacatttccagccttgacctcctacccctttgctttctgtgttat
ataagactggtgtacactttgtgacaatacattcagattctacacaatct
cttgtgtcgcttctgtttgtcattcattcgccgactccttgttcacctgc
aactagagacccattctaagcagacagggaccaaaaagggtctgtggcaa
cccgggtatttggtgattcaaaatactgtcagtgaggtaactgataacaa
ctgtagaatgaagcaaagggaggcactgagacaggtaacccagagatgag
accctgagacagtcagaagactgttaaccatgaacctagtgaggaaagta
agagatcgatgattgcctagtggttatgctcagatttaataatgggatcc
taactagtgtctactgactcagctctctttcatattggcatatcatgctg
catatatagccacacagtaagtataacccctttgcattttttttgtacac
tgtatgtttcttctagcttcccagcatccttgttctcctagatctagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_142077817_142078648
seq2: B6Ng01-002E01.b_43_877 (reverse)

seq1  TTAATTAATGGCCATTAGTTACTACACTCTTGTGGAGTAAAGCAATCCAT  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAATGGCCATTAGTTACTACACTCTTGTGGAGTAAAGCAATCCAT  50

seq1  TCAAGAACAGAAAAGGAAGCAGTAGATAAAGAAGAGAAGG-AAGATACAA  99
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TC-AGAACAGAAAAGGAAGCAGTAGATAAAGAAGAGAAGGAAAGATACAA  99

seq1  GGGATGCGCCGGGTAAAGGCAGGCATCTAGCTTCCTGATGAAG-AACAGG  148
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGGATGCGCCGGGTAAAGGCAGGCATCTAGCTTCCTGATGAAGAAACAGG  149

seq1  ATGGAG-AAAATGACGTTCTGAGGC-AAGAATGGGGTTCAGAGCAGTATT  196
      |||||| |||||||||||||||||| ||||||||||||||||||||||||
seq2  ATGGAGAAAAATGACGTTCTGAGGCAAAGAATGGGGTTCAGAGCAGTATT  199

seq1  ATTGTTGGTGGGAGGTCCCCCAGAGTCATTGTGGAGGTGAAAGTTTCCAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGGTGGGAGGTCCCCCAGAGTCATTGTGGAGGTGAAAGTTTCCAA  249

seq1  GTGTCTTGAAGTAGCAGTAAGTCTCCAATCATCATCTCTTTCTCTCGAGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTGAAGTAGCAGTAAGTCTCCAATCATCATCTCTTTCTCTCGAGA  299

seq1  TAATCATTTATATTAATTATTATTCAGAATAATAATTTAATTAGTAACCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATTTATATTAATTATTATTCAGAATAATAATTTAATTAGTAACCA  349

seq1  ATTATTATCAACATTGCTAGGGCCTTTTTTCCATTTCCTTTCAATATTAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATCAACATTGCTAGGGCCTTTTTTCCATTTCCTTTCAATATTAA  399

seq1  TGTAATAATACCCCTACACCTCCCTCCAAAGGTCCTTAAGCCAAAAAGGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAATACCCCTACACCTCCCTCCAAAGGTCCTTAAGCCAAAAAGGA  449

seq1  AGAGCTACGTGATGCTGACGTAAGAGAAGACAGAGTTCTGAGGAACCCTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTACGTGATGCTGACGTAAGAGAAGACAGAGTTCTGAGGAACCCTC  499

seq1  TGCTATGAACACTGTCCTCCACTGAGCTGGTAGCCCTCTGCTAAGCTCTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGAACACTGTCCTCCACTGAGCTGGTAGCCCTCTGCTAAGCTCTG  549

seq1  TGACTCAAGTAAGTAATGCTCTCTTTAATAACGTGTCTCCCCCATGGCTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCAAGTAAGTAATGCTCTCTTTAATAACGTGTCTCCCCCATGGCTT  599

seq1  CCCAGAAGATCAACAGTCAGAAATAGAACCCAGAGCTCCTGACGTCAGGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAGATCAACAGTCAGAAATAGAACCCAGAGCTCCTGACGTCAGGT  649

seq1  CCAGTGTTCTTTCCACTCTGCAGCGATGCCTAAAAATACAAGCACGTAAA  696
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCAGTGTTCTTTCCACTATGCAGCGATGCCTAAAAATACAAGCACGTAAA  699

seq1  GAAACTCTCCAAAGAAAAGAAAGCCAAATTCATCTTCACCTAAACATGCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCTCCAAAGAAAAGAAAGCCAAATTCATCTTCACCTAAACATGCC  749

seq1  ATAGAACCTCGGTTTTGTAAGCTTCATTTTAAAGGTTCTTAGCATCTATC  796
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATAGAACCTCGGTTTTGTAAGCTTCATTTTAAAGGTTCCTAGCATCTATC  799

seq1  TTAAGCCACAATATTTGAGTTTGTGTAAGTGAATTC  832
      ||||||||||||||||||||||||||||||||||||
seq2  TTAAGCCACAATATTTGAGTTTGTGTAAGTGAATTC  835

seq1: chr3_141953676_141954537
seq2: B6Ng01-002E01.g_375_1215

seq1  TCTCCATAGATACTTAAAAGAACAGCCAAGTTACACTCATACAAGAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATAGATACTTAAAAGAACAGCCAAGTTACACTCATACAAGAATTT  50

seq1  ATCAGCCTAGGAAATAGGAGGTTTGTGGTATTGCAATTTTCATGAGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCCTAGGAAATAGGAGGTTTGTGGTATTGCAATTTTCATGAGAAGG  100

seq1  TCTGCTAGAGCAGAACCCCCTGGTGCTAGCTTTCACAAGGCTCAAAGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTAGAGCAGAACCCCCTGGTGCTAGCTTTCACAAGGCTCAAAGGAG  150

seq1  TAGCACAAATTGTGATGAGGGTGTGAAATCCTTACCTGTCATTAGCTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACAAATTGTGATGAGGGTGTGAAATCCTTACCTGTCATTAGCTGAC  200

seq1  CTTAGGCAGAGCTGTTTTATCTTTACTGTAAATATTACCTGGTTCCTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGCAGAGCTGTTTTATCTTTACTGTAAATATTACCTGGTTCCTGTA  250

seq1  AGTCCTTCAAAAGTCATTCCTTTGTTTTGTGTCAGGTAACTTCAATGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTCAAAAGTCATTCCTTTGTTTTGTGTCAGGTAACTTCAATGTAC  300

seq1  ATTTCCAGCCTTGACCTCCTACCCCTTTGCTTTCTGTGTTATATAAGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAGCCTTGACCTCCTACCCCTTTGCTTTCTGTGTTATATAAGACT  350

seq1  GGTGTACACTTTGTGACAATACATTCAGATTCTACACAATCTCTTGTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTACACTTTGTGACAATACATTCAGATTCTACACAATCTCTTGTGTC  400

seq1  GCTTCTGTTTGTCATTCATTCGCCGACTCCTTGTTCACCTGCAACTAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGTTTGTCATTCATTCGCCGACTCCTTGTTCACCTGCAACTAGAG  450

seq1  ACCCATTCTAAGCAGACAGGGACCAAAAAGGGTCTGTGGCAACCCGGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATTCTAAGCAGACAGGGACCAAAAAGGGTCTGTGGCAACCCGGGTA  500

seq1  TTTGGTGATTCAAAATACTGTCAGTGAGGTAACTGATAACAACTGTAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGATTCAAAATACTGTCAGTGAGGTAACTGATAACAACTGTAGAA  550

seq1  TGAAGCAAAGAGGAGGCACTGAGACAGGTAACCCAGAGATGAGACCCTGA  600
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAAAG-GGAGGCACTGAGACAGGTAACCCAGAGATGAGACCCTGA  599

seq1  GACAGTCAGAAGACTGTTAACCATGAACCTTAGTGAGGAAAGTAAGAGAT  650
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GACAGTCAGAAGACTGTTAACCATGAACC-TAGTGAGGAAAGTAAGAGAT  648

seq1  CGATGAATTGCCTTAAGTGGTTTATGCTCAGGAATTTAAATAAATGGGAA  700
      ||||| |||||||  ||||| ||||||||||  ||||||   ||||||| 
seq2  CGATG-ATTGCCT--AGTGG-TTATGCTCAG--ATTTAA--TAATGGGA-  689

seq1  TCCCTAACTAGTGTCTACTGACCTCAGCCTTCTCTTTCATA-TGGCATAT  749
        ||||||||||||||||||| ||||||  ||||||||||| ||||||||
seq2  -TCCTAACTAGTGTCTACTGA-CTCAGC--TCTCTTTCATATTGGCATAT  735

seq1  CATGCTGCCATATATAAGCCACACAGTAAAGTAAAACCCCCTTTGCATTT  799
      ||||||| ||||||| ||||||||||| ||||| || |||||||||||||
seq2  CATGCTG-CATATAT-AGCCACACAGT-AAGTATAA-CCCCTTTGCATTT  781

seq1  TTTTTGTCACACTGTATG-TTCTTCTACGCTTCCCCAGCATTCTTGTTCT  848
      ||||||| |||||||||| |||||||| |||| |||||||| ||||||||
seq2  TTTTTGT-ACACTGTATGTTTCTTCTA-GCTT-CCCAGCATCCTTGTTCT  828

seq1  CCTATGATCTAGCC  862
      |||| |||||||||
seq2  CCTA-GATCTAGCC  841