BAC Information

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BAC

Clone NameB6Ng01-002G13
Chromosome3 (Build37)
Map Location 48,202,087 - 48,203,234
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039426, LOC666202, LOC666208
Downstream gene1700018B24Rik, LOC100039404, EG666230, 4932443G14, LOC545519
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002G13.bB6Ng01-002G13.g
ACCDH840443DH840444
length1,2421,141
definitionDH840443|Mus musculus domesticus DNA, BAC clone: B6Ng01-002G13, 5' end.DH840444|Mus musculus domesticus DNA, BAC clone: B6Ng01-002G13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaccagaaaaaaacaaaacaaaacaaaacaaaaaaacaaacaaa
caaacaaaaaaaaacctcccataatataaaaacagaatgaaaattgtcaa
actcattctatgatgtcacagtcaccatgattcttaaattacacaaagac
tcaacaaagaaagagaatttcagatcattttcccttatgaacattattgc
aaaaatgctcaaaaattactcatgaagcaaatctaagaacacatcaaaga
tatcattcaccatgatcaactaggtttcatcccagataagtagtggtggt
tcaatatatgaaaatccatcaatgtaattcaccatgtaaacaaactgaaa
aaaaaaaagaaagaaagaaaaaaacacatgatcatctcatgagattctga
gaccacttttgacaaaatccaatacctaatcatgttaaaaatcttggaga
gattagggatataaggcacatatcaacactcaataaatgcaatatataga
aagccaatggtcaacatcaaattcaatggtgagaaactcaaaacaattcc
actaaaatcaaagacaaaacaaacaaggctgttgactctccctatctagt
tcctataatatttgagattctttgtttgtttgtttgttgttgttgttgtt
tttgtttgttttttgtttgctttttgtttttgtttttttgagacaggatt
tctttgtgtagcccctggctgtcctggaactcactctgtagactaggctg
gcctcgaactcagaaatctgcctgcctctgcctcctgagtgctgggatta
aaggcgtgtgcccaccatgcccagcttataatttgagattctatctagag
tagtaagacatctaaaggagatcaagaggatataaattggaaagggaaac
ctcaagtatcactatttcaaattgttaagatagtatatttagtgatcaca
aaaattctatccagggactttctttaggctgggtaaataccttcagaaaa
gtggactagatacaaaattacttggaaatcaatagcactccattatacaa
aattaaaaaattgaaaagaaggtaaggagaccatattctctaatagccaa
aattgaaatttcattagcagtcaggacttgatgataagagaatcagtcct
tgaagcgatgagagattagaacggaagatgtctggtatcgtagaataaca
tgtaatggtcatcttcacatacagcgctcattacatatttag
gaattctgatccaaatgggtacagtgggaggcaaaactaattgtatttac
ccttcctgtagaaaatatgactatctactcactccatacagtgcacagga
aacagataaaaggaacagctccactctccaatcctgaagaatactgacaa
gtatatatagtaactgtgtatgcaatttttaatttgctttggagaacatt
tatgaatataaatgtagaacatttgtataattgtgaatgctttactgtag
tagaatttaaggtagttcaggggttgttatttcaaataaatattttcaat
ctgtattcttttgtttgtcattgtacaggcatctacattgttttataaag
catgaagtcctttgagttgcacatgtggtcacgaagaaaaatgtatcatt
tactcaagaccagggtcctcatggaaaacacaaccccacaaataggagct
atgctggataagctatattttagtctatgtgaatttagtttcttcacaca
tgaaaataaattagtgttactttatttttatacttattaaccattaagca
atgtaacaattaagtaatattgcatgagtaaatgtattttattgcataat
aatctgtcattattttaagaaaaacccccaacaagagaatgaatacacaa
gagctgaatctagcccacctgcacatttgtagcagatatacagcttaatc
tttcttttatttttggaattaaaagaaaataactttattgattaaggtat
gtagtatatcttattgtttattcatttggagaagacaggttaatcatcac
aattcagccataataactacaatgcaagaaatttcatcacccttaagaga
ttagccatacataacagctgtcactcacagtttcaccccaactcccaatt
ttctcctcaagatcacacagacactcatctactaaacttttgaatactaa
gtccatgaaatactattttggtctttacaactgatcaatatcacttgttg
gtggttatgtttaagctcttatgcccttgttcatatatacttggttacta
attttaatatggatggatacttaataattgaatggcacacttaaattttc
tacttaccacatgttaaaacattaatcctcatttctctgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_48202087_48203234
seq2: B6Ng01-002G13.g_70_1210

seq1  GAATTCTGATCCAAATGGGTACAGTGGGAGGCAAAACTAATTGTATTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATCCAAATGGGTACAGTGGGAGGCAAAACTAATTGTATTTAC  50

seq1  CCTTCCTGTAGAAAATATGACTATCTACTCACTCCATACAGTGCACAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTGTAGAAAATATGACTATCTACTCACTCCATACAGTGCACAGGA  100

seq1  AACAGATAAAAGGAACAGCTCCACTCTCCAATCCTGAAGAATACTGACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATAAAAGGAACAGCTCCACTCTCCAATCCTGAAGAATACTGACAA  150

seq1  GTATATATAGTAACTGTGTATGCAATTTTTAATTTGCTTTGGAGAACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATATAGTAACTGTGTATGCAATTTTTAATTTGCTTTGGAGAACATT  200

seq1  TATGAATATAAATGTAGAACATTTGTATAATTGTGAATGCTTTACTGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATATAAATGTAGAACATTTGTATAATTGTGAATGCTTTACTGTAG  250

seq1  TAGAATTTAAGGTAGTTCAGGGGTTGTTATTTCAAATAAATATTTTCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTTAAGGTAGTTCAGGGGTTGTTATTTCAAATAAATATTTTCAAT  300

seq1  CTGTATTCTTTTGTTTGTCATTGTACAGGCATCTACATTGTTTTATAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTCTTTTGTTTGTCATTGTACAGGCATCTACATTGTTTTATAAAG  350

seq1  CATGAAGTCCTTTGAGTTGCACATGTGGTCACGAAGAAAAATGTATCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGTCCTTTGAGTTGCACATGTGGTCACGAAGAAAAATGTATCATT  400

seq1  TACTCAAGACCAGGGTCCTCATGGAAAACACAACCCCACAAATAGGAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAAGACCAGGGTCCTCATGGAAAACACAACCCCACAAATAGGAGCT  450

seq1  ATGCTGGATAAGCTATATTTTAGTCTATGTGAATTTAGTTTCTTCACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGATAAGCTATATTTTAGTCTATGTGAATTTAGTTTCTTCACACA  500

seq1  TGAAAATAAATTAGTGTTACTTTATTTTTATACTTATTAACCATTAAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATAAATTAGTGTTACTTTATTTTTATACTTATTAACCATTAAGCA  550

seq1  ATGTAACAATTAAGTAATATTGCATGAGTAAATGTATTTTATTGCATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAACAATTAAGTAATATTGCATGAGTAAATGTATTTTATTGCATAAT  600

seq1  AATCTGTCATTATTTTAAGAAAAACCCCCAACAAGAGAATGAATACACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTCATTATTTTAAGAAAAACCCCCAACAAGAGAATGAATACACAA  650

seq1  GAGCTGAATCTAGCCCACCTGCACATTTGTAGCAGATATACAGCTTAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGAATCTAGCCCACCTGCACATTTGTAGCAGATATACAGCTTAATC  700

seq1  TTTCTTTTATTTTTGGAATTAAAAGAAAATAACTTTATTGATTAAGGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTATTTTTGGAATTAAAAGAAAATAACTTTATTGATTAAGGTAT  750

seq1  GTAGTATATCTTATTGTTTATTCATTTGGAGAAGACAGGTTAATCATCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTATATCTTATTGTTTATTCATTTGGAGAAGACAGGTTAATCATCAC  800

seq1  AATTCAGCCATAATAACTACAATGCAAGAAATTTCCATCACCCTTAAGAG  850
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AATTCAGCCATAATAACTACAATGCAAGAAATTT-CATCACCCTTAAGAG  849

seq1  ATTAGCCATACATAACAGCTGTCACTCACAGTTTCACCCCAACTCCCAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCCATACATAACAGCTGTCACTCACAGTTTCACCCCAACTCCCAAT  899

seq1  TTTCTCCCTCAGGATCACACAGACACTCATCTACTAAACTTTTGAAATAC  950
      ||||| ||||| |||||||||||||||||||||||||||||||| |||||
seq2  TTTCT-CCTCAAGATCACACAGACACTCATCTACTAAACTTTTG-AATAC  947

seq1  TAAGTCCATGAAATTACTATTTTGGTCTTTACAACTGATCAATATCACTT  1000
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAAGTCCATGAAA-TACTATTTTGGTCTTTACAACTGATCAATATCACTT  996

seq1  G-TGGTGGTTATGTTTAAGCTC-TATGCCCTTGTTTCATATATTACTTGT  1048
      | |||||||||||||||||||| |||||||||| |||||||| |||||| 
seq2  GTTGGTGGTTATGTTTAAGCTCTTATGCCCTTG-TTCATATA-TACTTGG  1044

seq1  TTACTAATTTTAATATGGATTGATATTTTATTATTTGAATTGTCACATTT  1098
      |||||||||||||||||||| ||||  ||| || ||||| || |||| ||
seq2  TTACTAATTTTAATATGGATGGATA-CTTAATAATTGAA-TGGCACACTT  1092

seq1  AATTTTTCTACTTTACCACATGTT-AAACATTTATTCTCATTTCTCCTGC  1147
      || |||||||| |||||||||||| ||||||| || ||||||||| ||||
seq2  AAATTTTCTAC-TTACCACATGTTAAAACATTAATCCTCATTTCT-CTGC  1140

seq1  A  1148
      |
seq2  A  1141