BAC Information

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BAC

Clone NameB6Ng01-003A22
Chromosome3 (Build37)
Map Location 93,763,528 - 93,764,645
singlet/doubletsinglet
Overlap geneTdpoz5
Upstream gene2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346
Downstream geneEG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003A22.bB6Ng01-003A22.g
ACCDH840890DH840891
length1,2241,093
definitionDH840890|Mus musculus domesticus DNA, BAC clone: B6Ng01-003A22, 5' end.DH840891|Mus musculus domesticus DNA, BAC clone: B6Ng01-003A22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatgcatctcgacctttcgctgatgaaaggcttctccacctgga
tttcctctgcattttcctactttaaggagagggtgggggtaggcttgatt
gcaatgatcctatgcggtggagtgttgcttttgctctggatggtctgtaa
actcaaagcccaaacaaaaagggacaagatggtaatagcccaagcacttg
cagcattagaacatggtacctcccctgatatatggttatctatacttaag
caataagtcgctggccactcagttcttgcactgcaataggctcgtctcat
tgcacaggatagagtgagtgtgcttcagcagcccaatagagttgcatggc
taagcactgcagtagaaaggctctgcggcataatatgagcctgttcgagg
gagacatgtcatcttgtatgaagattgagtgtccaagtgtcctttccaca
ggaaaaacgacatgggagcggaccaagacccctccgcgtgacgagcctgg
gagaaggttttgtgtaatgcccctatttttgcacactggggatttgacct
ctatctccactctcagtactgggtggcctgttgccttttaaataaaagaa
aagggggagatgtgaggagctgcccttgcaatcgccattacaagatggcg
ctgacatccggtgttctaactggtaaacaagtagtctgcgcatttgctgg
ggtatttttccattccttgtgccctgcctgtcccgtggcatcatctgggc
tgatggtgagcaaccagtcagggtgaaacacgtctccaaccgctcttcgt
ggcctatttaaggaccgagtttcctgtgttctgggtctcctccccagaag
ctgatcatctttctctcgagatgcattaaagctttgctgcagaaaggatc
cgagtgtgtcctgtgtgtgtgtcctcgccggcgagactctttatcacaca
ggacacccttaggtggagttttccttgtaatgtccctatagtctgcttta
tacaatatattgcttaaatttgactctatcatgaaatacctcactttcct
atctgtattgaatgaaagtttgctgattaatagtctggctgcatctgaag
tctttaagttatagaccatgtgccttgactcaatgactcaaaatcttcca
cacttgagttcaggttacctccactatatactgcgacgcttctacttgaa
tgccggaggacatgagaactgtat
gaattcagggctcacaaggccatcctagcagctcgctctccagttttcag
agccatgtttgaacatgaaatggaggagagactaggaaaccccactgaga
tccatgacctggatcccaaagtctttaaggagatgatgggcttcatttac
actgggaaggcgccacacctccaaagccactccatggccactgatgtgct
gacagctgctgacaagtatggtctggagggcctgaaggtcctgtgtgagg
atgccctctgcaggaacctctctgtggagaatgctgcacaaactctcatc
ctggctgacctccacaaaagagagcagctgaagactcaggccctgtattt
cattgcacttcatgcttctgtggtctctgagacctcagagtggaagtcaa
tgatggagacccatccccacttggttggctgaagcattccacttcctggg
tcctgcacgcagtgttgagccctcactcaaacacgtaaaatgagtttagg
ggatggacagctatgaccaacatctgtcttccaatagcaataaccagtgt
tgttaccactgatttctggttagagtacagtattgctggaacatttatag
tgaacctgggaaaaagcagcatggtggctcagcatgtaaaacagctgtta
tatgttaaaatgctgggtgggggatgggcagcactggagtctgggacagt
ctccttgacttctactctgttaatgttctagtatgatttttgtctgatat
ttaggaaactgggatttaatttaggtgctgtccctaaggacagacaaacc
tgagtttcttcagagaaacctgtctgcattggactatgtagaagagatga
ctggggcccagagcaaaggataaatcaagcacgaatgttactcattggga
tggaaagacatgaagactttattttttaaagattcagtttgtgggactca
gctgcagaagcagtacagtcactcagagactctgttcagtctcagcatac
aggagagttttcagccactccttactgtggatcagagatctgagctcatc
tggtctcatgctacaacagcttgtagacaacctaaccaataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_93763528_93764645
seq2: B6Ng01-003A22.g_69_1161 (reverse)

seq1  TTTATTTGGTTAAGGTTTTGTCTACAGAGCTGTTTGTAGCAATGGAGACC  50
      |||| ||||||| |   ||||||||| ||||| ||||||||   ||||||
seq2  TTTA-TTGGTTAGG---TTGTCTACA-AGCTG-TTGTAGCA--TGAGACC  42

seq1  AGATGAGGGCCTCAGATCCTCTGGATCACAAGTTAAGGGGTGGCTGAAAA  100
      |||||||   ||||||| |||||   ||||   ||||| ||||||| |||
seq2  AGATGAG---CTCAGAT-CTCTGATCCACA--GTAAGGAGTGGCTG-AAA  85

seq1  ACTCTCCTGTATGCTGAGAACTGAACCAGAGTTCTCTGAGTGAACTGTAA  150
      |||||||||||||||||| |||||| ||||| |||||||||| ||||| |
seq2  ACTCTCCTGTATGCTGAG-ACTGAA-CAGAG-TCTCTGAGTG-ACTGT-A  130

seq1  CTGCTTCTGCAGCTGAGTTCCCACAAACTGAATCTTTAAAAAATAAAAGT  200
      ||||||||||||||||| |||||||||||||||||||||||||| |||||
seq2  CTGCTTCTGCAGCTGAG-TCCCACAAACTGAATCTTTAAAAAAT-AAAGT  178

seq1  CTTCATTGTCTTTTCCATCCCAATGAGTTAACATTCGTGCTTGATTTATC  250
      ||||| |||| |||||||||||||||| ||||||||||||||||||||||
seq2  CTTCA-TGTC-TTTCCATCCCAATGAG-TAACATTCGTGCTTGATTTATC  225

seq1  CTTTGCTCTGGGCCCCAGTCATCTCTTCTACATAGTCCAATGCAGACAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTCTGGGCCCCAGTCATCTCTTCTACATAGTCCAATGCAGACAGG  275

seq1  TTTCTCTGAAGAAACTCAGGTTTGTCTGTCCTTAGGGACAGCACCTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGAAGAAACTCAGGTTTGTCTGTCCTTAGGGACAGCACCTAAAT  325

seq1  TAAATCCCAGTTTCCTAAATATCAGACAAAAATCATACTAGAACATTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCCAGTTTCCTAAATATCAGACAAAAATCATACTAGAACATTAAC  375

seq1  AGAGTAGAAGTCAAGGAGACTGTCCCAGACTCCAGTGCTGCCCATCCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGAAGTCAAGGAGACTGTCCCAGACTCCAGTGCTGCCCATCCCCC  425

seq1  ACCCAGCATTTTAACATATAACAGCTGTTTTACATGCTGAGCCACCATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCATTTTAACATATAACAGCTGTTTTACATGCTGAGCCACCATGC  475

seq1  TGCTTTTTCCCAGGTTCACTATAAATGTTCCAGCAATACTGTACTCTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTCCCAGGTTCACTATAAATGTTCCAGCAATACTGTACTCTAAC  525

seq1  CAGAAATCAGTGGTAACAACACTGGTTATTGCTATTGGAAGACAGATGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCAGTGGTAACAACACTGGTTATTGCTATTGGAAGACAGATGTT  575

seq1  GGTCATAGCTGTCCATCCCCTAAACTCATTTTACGTGTTTGAGTGAGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATAGCTGTCCATCCCCTAAACTCATTTTACGTGTTTGAGTGAGGGC  625

seq1  TCAACACTGCGTGCAGGACCCAGGAAGTGGAATGCTTCAGCCAACCAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACTGCGTGCAGGACCCAGGAAGTGGAATGCTTCAGCCAACCAAGT  675

seq1  GGGGATGGGTCTCCATCATTGACTTCCACTCTGAGGTCTCAGAGACCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATGGGTCTCCATCATTGACTTCCACTCTGAGGTCTCAGAGACCACA  725

seq1  GAAGCATGAAGTGCAATGAAATACAGGGCCTGAGTCTTCAGCTGCTCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATGAAGTGCAATGAAATACAGGGCCTGAGTCTTCAGCTGCTCTCT  775

seq1  TTTGTGGAGGTCAGCCAGGATGAGAGTTTGTGCAGCATTCTCCACAGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGAGGTCAGCCAGGATGAGAGTTTGTGCAGCATTCTCCACAGAGA  825

seq1  GGTTCCTGCAGAGGGCATCCTCACACAGGACCTTCAGGCCCTCCAGACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTGCAGAGGGCATCCTCACACAGGACCTTCAGGCCCTCCAGACCA  875

seq1  TACTTGTCAGCAGCTGTCAGCACATCAGTGGCCATGGAGTGGCTTTGGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTCAGCAGCTGTCAGCACATCAGTGGCCATGGAGTGGCTTTGGAG  925

seq1  GTGTGGCGCCTTCCCAGTGTAAATGAAGCCCATCATCTCCTTAAAGACTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCGCCTTCCCAGTGTAAATGAAGCCCATCATCTCCTTAAAGACTT  975

seq1  TGGGATCCAGGTCATGGATCTCAGTGGGGTTTCCTAGTCTCTCCTCCATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCCAGGTCATGGATCTCAGTGGGGTTTCCTAGTCTCTCCTCCATT  1025

seq1  TCATGTTCAAACATGGCTCTGAAAACTGGAGAGCGAGCTGCTAGGATGGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTCAAACATGGCTCTGAAAACTGGAGAGCGAGCTGCTAGGATGGC  1075

seq1  CTTGTGAGCCCTGAATTC  1118
      ||||||||||||||||||
seq2  CTTGTGAGCCCTGAATTC  1093