BAC Information

Click to search

BAC

Clone NameB6Ng01-003C05
Chromosome3 (Build37)
Map Location 84,419,770 - 84,574,931
singlet/doubletdoublet
Overlap geneTmem154
Upstream geneLOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713, 6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4
Downstream geneLOC624889, Fbxw7, Dear1, LOC100042237, LOC100042125, Pet112l, 9930021J17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003C05.bB6Ng01-003C05.g
ACCDH840943DH840944
length1,0531,215
definitionDH840943|Mus musculus domesticus DNA, BAC clone: B6Ng01-003C05, 5' end.DH840944|Mus musculus domesticus DNA, BAC clone: B6Ng01-003C05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,419,770 - 84,420,816)(84,573,708 - 84,574,931)
sequence
gaattcacttctaatctcttcttgtttctcgcctctagaaaacaattcca
ttttcccggaggcagcgaggcatctatctgagaggattcggagtccaaaa
gcttgctctggcctgagctgctgactgcagacccacctctccaactgtga
acccccaacaccaaaccctgctgtgttcctgacccgttaatcctttccta
gggaacccgctattctgaacatgttaaatcagaaccctctgccctccacg
ttcatacctcaaaccccctgcttttcaccttcttcctggagatgacctga
aacaccaaggcctgttagttttactccctagtattttctgagtctgtctt
cttccagaaagttgaatgatagtactcacttcataggactgtggagatga
gaccacagactacagacccctgccttctcctgctcacctgtatctcttag
cctcacaaccttcttttaaaatcgccttttgattgttctaatgcccatct
cacccctactgtctctaaccttaacccttccttgagttttatcagttttg
agttatgcatcaacgatcctcccagtgcctcagcctcccctccagtgttc
ctgtcttcaccctgacctcagtctcttactcctgtagtcatagctagggc
agtctaaaggaacttcctgagtgaggcaaatgtctttagccatttaggac
cgtagccctatgaatgtgaccagcgacagtgaggagcagagctgtaaatt
ctagttaatattttaactcatgggacatgacacactagtatgtgtttgtg
ctcaccttgttctttcccatttctttagatgcaggacctagctttgttca
tttcaccactgtacctgacaaagacattctcttcttttcctcactttctc
tctctctctctggggtcattcccatcaaccagtgttgtgtgtgcatgtgc
atgtgttgtatgtacatgagtgctcatggtgtatggattgtgtgtgtgtg
tgcacatgtgtgtgtacatgtgcatgtgggtatgtgcatgagtgttcaag
tgt
gaattcatgatcctcccaccttagtttaccaaatgctggatgacagtcct
gctctcttgattcatgaattagtaataggagcacagggcagtgtgacctt
ttaatcccaatagtctggaggcagaggcaggcagatcgctgcgagttcca
ggctgcccagtgctacaaggtgaaaccctgtcttaagagaataaaaaata
tatgtggaaggcagggtgaggagaggggagatgaaagggaaaacaaaaca
accccaccccaaacccaaacttaacagatgtgaaaacgaaacaaccagaa
accactggcttcagaaaaaatatataaaaactaagatgaaagaaacatct
tgccgagtgggaaaataaaagcaaaaaatatttctggtatgtgtaaacca
gtcttgctcacagagatgcgcaagcacacgagaagcagctgacatggaag
cacaatggtttcagctccaggcagctaccaggtactaagccccattgctt
gaaagccagagtccagcaaagaaaatacaaatgtaacccttggcttaccc
caaccaccatgtgcctctgttaccagcttcatcaatctgctggtacagcc
ctgaagaaggcatcccaggagactctgccagtaccatatcagactgatac
accggctggcaactcttataggtcaaagaggacaaacaccagctatccca
gctgattcacaccctcttcatcacaggagtaaggatgtataacctcttga
tggttctaccatgaccatcacagtcttgggagcaaacgttcagagaatga
gctatcaggatcagaagtgaagtactatcttcaacttagattgaccccta
aacttcagctgggcttgtgctctgctttttgggcccagtgcttttgataa
catattaaaggagggagttttgacaccagaaggaccaagttaaaagggag
gagacagaaatgctcctgggggaatgttcataatgttctggacttcagag
gctttgtagtacatgtacctcataccaaagcagaccactcaccccttctg
tagcaatagatattttattcatttgcttttttatttcataataaatgctg
gagaaatctcagcaatacatttatgagacccaccattgagtaatgtagtt
tggaaaggtacaccttcccttggggaggacctccgctaatctaaatacaa
tggaagctttattaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_84419770_84420816
seq2: B6Ng01-003C05.b_44_1096

seq1  GAATTCACTTCTAATCTCTTCTTGTTTCTCGCCTCTAGAAAACAATTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCTAATCTCTTCTTGTTTCTCGCCTCTAGAAAACAATTCCA  50

seq1  TTTTCCCGGAGGCAGCGAGGCATCTATCTGAGAGGATTCGGAGTCCAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCGGAGGCAGCGAGGCATCTATCTGAGAGGATTCGGAGTCCAAAA  100

seq1  GCTTGCTCTGGCCTGAGCTGCTGACTGCAGACCCACCTCTCCAACTGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTCTGGCCTGAGCTGCTGACTGCAGACCCACCTCTCCAACTGTGA  150

seq1  ACCCCCAACACCAAACCCTGCTGTGTTCCTGACCCGTTAATCCTTTCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCAACACCAAACCCTGCTGTGTTCCTGACCCGTTAATCCTTTCCTA  200

seq1  GGGAACCCGCTATTCTGAACATGTTAAATCAGAACCCTCTGCCCTCCACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCCGCTATTCTGAACATGTTAAATCAGAACCCTCTGCCCTCCACG  250

seq1  TTCATACCTCAAACCCCCTGCTTTTCACCTTCTTCCTGGAGATGACCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACCTCAAACCCCCTGCTTTTCACCTTCTTCCTGGAGATGACCTGA  300

seq1  AACACCAAGGCCTGTTAGTTTTACTCCCTAGTATTTTCTGAGTCTGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCAAGGCCTGTTAGTTTTACTCCCTAGTATTTTCTGAGTCTGTCTT  350

seq1  CTTCCAGAAAGTTGAATGATAGTACTCACTTCATAGGACTGTGGAGATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGAAAGTTGAATGATAGTACTCACTTCATAGGACTGTGGAGATGA  400

seq1  GACCACAGACTACAGACCCCTGCCTTCTCCTGCTCACCTGTATCTCTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACAGACTACAGACCCCTGCCTTCTCCTGCTCACCTGTATCTCTTAG  450

seq1  CCTCACAACCTTCTTTTAAAATCGCCTTTTGATTGTTCTAATGCCCATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACAACCTTCTTTTAAAATCGCCTTTTGATTGTTCTAATGCCCATCT  500

seq1  CACCCCTACTGTCTCTAACCTTAACCCTTCCTTGAGTTTTATCAGTTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCTACTGTCTCTAACCTTAACCCTTCCTTGAGTTTTATCAGTTTTG  550

seq1  AGTTATGCATCAACGATCCTCCCAGTGCCTCAGCCTCCCCTCCAGTGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGCATCAACGATCCTCCCAGTGCCTCAGCCTCCCCTCCAGTGTTC  600

seq1  CTGTCTTCACCCTGACCTCAGTCTCTTACTCCTGTAGTCATAGCTAGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTCACCCTGACCTCAGTCTCTTACTCCTGTAGTCATAGCTAGGGC  650

seq1  AGTCTAAAGGAACTTCCTGAGTGAGGCAAATGTCTTTAGCCATTTAGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAAAGGAACTTCCTGAGTGAGGCAAATGTCTTTAGCCATTTAGGAC  700

seq1  CGTAGCCCTATGAATGTGACCAGCGACAGTGAGGAGCAGAGCTGTAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGCCCTATGAATGTGACCAGCGACAGTGAGGAGCAGAGCTGTAAATT  750

seq1  CTAGTTAATATTTTAACTCATGGGACATGACACACTAGTATGTGTTTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTAATATTTTAACTCATGGGACATGACACACTAGTATGTGTTTGTG  800

seq1  CTCACCTTGTTCTTTCCCATTTCTTTAGATGCA-GACCTAGCTTTGTTCA  849
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTCACCTTGTTCTTTCCCATTTCTTTAGATGCAGGACCTAGCTTTGTTCA  850

seq1  TTTCACCACTGTACCTGACAAAGACATTCTCCTC-TTTCCTCACTTTCTC  898
      ||||||||||||||||||||||||||||||| || |||||||||||||||
seq2  TTTCACCACTGTACCTGACAAAGACATTCTCTTCTTTTCCTCACTTTCTC  900

seq1  TCTCTCTCTCTGGGGTCATTCCCATCAACCAGTG-TGTGTGTGCATGTGC  947
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCTCTCTCTCTGGGGTCATTCCCATCAACCAGTGTTGTGTGTGCATGTGC  950

seq1  ATGTG-TGTATGTACATGAGTGCTCAT-GTGTATGTA-TGTGTGTGTGTG  994
      ||||| ||||||||||||||||||||| ||||||| | ||||||||||||
seq2  ATGTGTTGTATGTACATGAGTGCTCATGGTGTATGGATTGTGTGTGTGTG  1000

seq1  TGCACATGTGTGTGTACATGTGCATGTGTGTATGTGCATGAGTGCTCAAG  1044
      |||||||||||||||||||||||||||| ||||||||||||||| |||||
seq2  TGCACATGTGTGTGTACATGTGCATGTGGGTATGTGCATGAGTGTTCAAG  1050

seq1  TGT  1047
      |||
seq2  TGT  1053

seq1: chr3_84573708_84574931
seq2: B6Ng01-003C05.g_67_1281 (reverse)

seq1  TTAAT-AAGCTTCCATTTGTATTTTAAAGATTTAAGCAGCAGGCGTCCT-  48
      ||||| ||||||||| ||||||||   |||||     ||| |  ||||| 
seq2  TTAATAAAGCTTCCA-TTGTATTT---AGATT-----AGCGGAGGTCCTC  41

seq1  CCCAAGAGA--GTGGTCACTTTCAAACTACACTACATTCATGTGTGGGTC  96
      |||||| ||  |||  |  || ||||||||| |||  |||   |||||||
seq2  CCCAAGGGAAGGTGTACCTTTCCAAACTACATTAC--TCAATGGTGGGTC  89

seq1  ATA-AAATGTA-TGCTGAG-TATCTACCAGCATTTATTAATGAGATAAAA  143
        | ||||||| ||||||| | ||| |||||||||||| |||| || |||
seq2  TCATAAATGTATTGCTGAGATTTCT-CCAGCATTTATT-ATGAAAT-AAA  136

seq1  AAAGCAAATAGAATAGAAAGTATCTATTGCCACAGAAGGGGTGGAGTGGT  193
      ||||||||| ||||  ||| |||||||||| ||||||||||| |||||||
seq2  AAAGCAAAT-GAAT--AAAATATCTATTGCTACAGAAGGGGT-GAGTGGT  182

seq1  CTGCTTTGGTTATG-GGTACATGTACTACAAAGCCCTCTGAAGTCCAGAA  242
      ||||||||| |||| |||||||||||||||||| ||||||||||||||||
seq2  CTGCTTTGG-TATGAGGTACATGTACTACAAAG-CCTCTGAAGTCCAGAA  230

seq1  CA-TATGGACATTCCCCCAGGAGCATTTCTGTCTCCTCCCTTTTAACTTG  291
      || |||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATGAACATTCCCCCAGGAGCATTTCTGTCTCCTCCCTTTTAACTTG  280

seq1  GTCCTTCTGGTGTCAAAACTCCCTCC-TTAATATGTTATCAAAAGCACTG  340
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTCCTTCTGGTGTCAAAACTCCCTCCTTTAATATGTTATCAAAAGCACTG  330

seq1  GG-CCAAAAAGCAGAGCACAAGCCCAGCTGAAGTTTAGGGGTCAATCTAA  389
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAAAAAGCAGAGCACAAGCCCAGCTGAAGTTTAGGGGTCAATCTAA  380

seq1  GTTGAAGATAGTACTTCACTTCTGATCCTGATAGCTCATTCTCTGAACGT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAGATAGTACTTCACTTCTGATCCTGATAGCTCATTCTCTGAACGT  430

seq1  TTGCTCCCAAGACTGTGATGGTCATGGTAGAACCATCAAGAGGTTATACA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCCAAGACTGTGATGGTCATGGTAGAACCATCAAGAGGTTATACA  480

seq1  TCCTTACTCCTGTGATGAAGAGGGTGTGAATCAGCTGGGATAGCTGGTGT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACTCCTGTGATGAAGAGGGTGTGAATCAGCTGGGATAGCTGGTGT  530

seq1  TTGTCCTCTTTGACCTATAAGAGTTGCCAGCCGGTGTATCAGTCTGATAT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTCTTTGACCTATAAGAGTTGCCAGCCGGTGTATCAGTCTGATAT  580

seq1  GGTACTGGCAGAGTCTCCTGGGATGCCTTCTTCAGGGCTGTACCAGCAGA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGGCAGAGTCTCCTGGGATGCCTTCTTCAGGGCTGTACCAGCAGA  630

seq1  TTGATGAAGCTGGTAACAGAGGCACATGGTGGTTGGGGTAAGCCAAGGGT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGAAGCTGGTAACAGAGGCACATGGTGGTTGGGGTAAGCCAAGGGT  680

seq1  TACATTTGTATTTTCTTTGCTGGACTCTGGCTTTCAAGCAATGGGGCTTA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTGTATTTTCTTTGCTGGACTCTGGCTTTCAAGCAATGGGGCTTA  730

seq1  GTACCTGGTAGCTGCCTGGAGCTGAAACCATTGTGCTTCCATGTCAGCTG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTGGTAGCTGCCTGGAGCTGAAACCATTGTGCTTCCATGTCAGCTG  780

seq1  CTTCTCGTGTGCTTGCGCATCTCTGTGAGCAAGACTGGTTTACACATACC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCGTGTGCTTGCGCATCTCTGTGAGCAAGACTGGTTTACACATACC  830

seq1  AGAAATATTTTTTGCTTTTATTTTCCCACTCGGCAAGATGTTTCTTTCAT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATTTTTTGCTTTTATTTTCCCACTCGGCAAGATGTTTCTTTCAT  880

seq1  CTTAGTTTTTATATATTTTTTCTGAAGCCAGTGGTTTCTGGTTGTTTCGT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTTTTATATATTTTTTCTGAAGCCAGTGGTTTCTGGTTGTTTCGT  930

seq1  TTTCACATCTGTTAAGTTTGGGTTTGGGGTGGGGTTGTTTTGTTTTCCCT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACATCTGTTAAGTTTGGGTTTGGGGTGGGGTTGTTTTGTTTTCCCT  980

seq1  TTCATCTCCCCTCTCCTCACCCTGCCTTCCACATATATTTTTTATTCTCT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTCCCCTCTCCTCACCCTGCCTTCCACATATATTTTTTATTCTCT  1030

seq1  TAAGACAGGGTTTCACCTTGTAGCACTGGGCAGCCTGGAACTCGCAGCGA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACAGGGTTTCACCTTGTAGCACTGGGCAGCCTGGAACTCGCAGCGA  1080

seq1  TCTGCCTGCCTCTGCCTCCAGACTATTGGGATTAAAAGGTCACACTGCCC  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTGCCTCTGCCTCCAGACTATTGGGATTAAAAGGTCACACTGCCC  1130

seq1  TGTGCTCCTATTACTAATTCATGAATCAAGAGAGCAGGACTGTCATCCAG  1189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCCTATTACTAATTCATGAATCAAGAGAGCAGGACTGTCATCCAG  1180

seq1  CATTTGGTAAACTAAGGTGGGAGGATCATGAATTC  1224
      |||||||||||||||||||||||||||||||||||
seq2  CATTTGGTAAACTAAGGTGGGAGGATCATGAATTC  1215