BAC Information

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BAC

Clone NameB6Ng01-003E01
Chromosome3 (Build37)1 (Build37)
Map Location 41,059,092 - 41,059,737166,731,444 - 166,732,560
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003E01.bB6Ng01-003E01.g
ACCDH841024DH841025
length7981,101
definitionDH841024|Mus musculus domesticus DNA, BAC clone: B6Ng01-003E01, 5' end.DH841025|Mus musculus domesticus DNA, BAC clone: B6Ng01-003E01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,092 - 41,059,737)(166,731,444 - 166,732,560)
sequence
gaattctttgtttagctctgagccccatttttaatggggttatttgattt
tctggagtccaccttcttgagttctttatatatattgcatattagtcccc
tatctgatttaggataggtaaagatcctttcccaatttgttggtggcctt
tttggcttattgatggtgtcttttgccttatagaaactttgcaattttat
gaggtctcatttgtcgattcttgatcttacagcacaagccattgttgttc
tattcaggaatttttcccctgtgcccatatcttcgaggcttttccccact
ttctcctctataagtttcactgtctctggttttattggagttccttgatc
cacttagatttgaccttagtacaaggagataggaatggatcaattcacat
tcttctacatgataacagccagttgtgccagcaccatttgttgaaaatgc
tgtcttttttccactggatggttttagctcccttgtcaaagatccagtga
ccataggtgtgtgggtttatttctgggtcttcaattctattccattggtc
tacttgtctgtcgctataccagtaccatgtagtttttatcacaattgctc
tgtagttcaggcatggtgattccaccagaggttctaacattgttcttata
taacactttctatatgttcaggcacaactatgtgggtctcttgagcaaca
cacacgatcctaactattttattgtacatgacatttaaagaattgaaagg
taaggatttgtttaaaaagcttctcagagtctcctagccaacaagacc
gaattccatgtacgaatttcttctgagaacaaagctgagtgtgggaaaca
aggttgtggcagactgaggatttgggccaacttcccatctaggttatttt
cctaagtactggaaatcaattgtctaggggaacttgatacttttcttctc
tttaaagaaagtccgatgataaaatttactcttcccagtgtgggatttgc
ctctgtctggtatctgctgatgtcagctttccaatcaataaaagacttcc
agagagctggaaaccttagtctgtgccggtatgtgtgcacctgtatgtgt
gtgtgtgcatgtgtgcatgtgtgcctgtgtgtgtgtatgtgtgtgcacaa
gtgcatgcatgcctgtgtgtgtatgtatgtgtttgtgtttcaaggtttcg
aactttacccttaagaggactaattccccacaacacaatcctgtagctct
catgtcctctgtttctatgtcaacagaaatgtgtcctagaaaatattata
aaatgttaaaggatgtcaggcattgaggcactcaactttaatcccagaac
tcaggaggcagaggcaggtggatctctgtgagttcaaggactgtctggtc
tacaaagagagtttcaggacatttcatacaaagaaacccagccttgaaaa
accaaacaaaaattttaaaggatatctgtgtcttcttaggtaagttacct
aacatctctaaagccccatttcatgtataaagcagggaagatcatgctag
caatttttgcccatttcatagaattgttttgatgattaaaatgactaaac
agataccatatttaacagaatactcaaccatgtaacttccttgtgaaggt
ttgttcatgatcactgttagagacacttggttctctgagacaagcacacc
tagctagtaagtttcaaatggaagtggcaggatacatggacttttgggat
atatattcagtagaatctatgatatgaaatgacacttcaagcatcttgaa
tacttggcgcaactaaagatactgagctggcattagcgacagtatgaagt
agttaatacttatgattatgagcctccacccttaaagcgtctgctgtctt
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059092_41059737
seq2: B6Ng01-003E01.b_46_679 (reverse)

seq1  AGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGC  50
      |||||||||||||||||||||||||||||           ||||||||||
seq2  AGAACCTCTGGTGGAATCACCATGCCTGA-----------ACTACAGAGC  39

seq1  AATTGTGATAAAAACTGCATGGTACTGGTATAGTGACAGACAAGCAGACC  100
      |||||||||||||||| |||||||||||||||| |||||||||| |||||
seq2  AATTGTGATAAAAACTACATGGTACTGGTATAGCGACAGACAAGTAGACC  89

seq1  AATGGAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATGGTCAC  150
      |||||||||||||||||||| ||||||  || ||||||||||||||||||
seq2  AATGGAATAGAATTGAAGACCCAGAAATAAACCCACACACCTATGGTCAC  139

seq1  TTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCAT  200
      | |||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTTTGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCAT  189

seq1  TTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGC  250
      |||||||||||||||||||||||||||| |||||||||||||||||||| 
seq2  TTTCAACAAATGGTGCTGGCACAACTGGCTGTTATCATGTAGAAGAATGT  239

seq1  GAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATC  300
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAATTGATCCATTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATC  289

seq1  AAGGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGT  350
      ||||||| ||| ||||||||||||||| ||||||||||||||||||||||
seq2  AAGGAACTCCA-ATAAAACCAGAGACAGTGAAACTTATAGAGGAGAAAGT  338

seq1  GGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGAA  400
      |||||||||||| |||||||||| ||||||||||||||||||| ||||||
seq2  GGGGAAAAGCCTCGAAGATATGGGCACAGGGGAAAAATTCCTGAATAGAA  388

seq1  CAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCATG  450
      || |||||||||||||||||||||  ||||| |||||||| |||||||| 
seq2  CAACAATGGCTTGTGCTGTAAGATCAAGAATCGACAAATGAGACCTCATA  438

seq1  AAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAG  500
      ||| ||||||| ||||  ||||||||||||||| |||||||| |||||||
seq2  AAATTGCAAAGTTTCTATAAGGCAAAAGACACCATCAATAAGCCAAAAAG  488

seq1  G-CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGG  549
      | |||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCCACCAACAAATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGG  538

seq1  GACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAA  599
      ||||||||| |||||||||| ||||||||||||||||||| |||||||||
seq2  GACTAATATGCAATATATATAAAGAACTCAAGAAGGTGGACTCCAGAAAA  588

seq1  TCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  646
      ||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCAAATAACCCCATT-AAAAATGGGGCTCAGAGCTAAACAAAGAATT  634

seq1: chr1_166731444_166732560
seq2: B6Ng01-003E01.g_67_1167

seq1  GAATTCCATGTACGAATTTCTTCTGAGAACAAAGCTGAGTGTGGGAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTACGAATTTCTTCTGAGAACAAAGCTGAGTGTGGGAAACA  50

seq1  AGGTTGTGGCAGACTGAGGATTTGGGCCAACTTCCCATCTAGGTTATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTGGCAGACTGAGGATTTGGGCCAACTTCCCATCTAGGTTATTTT  100

seq1  CCTAAGTACTGGAAATCAATTGTCTAGGGGAACTTGATACTTTTCTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGTACTGGAAATCAATTGTCTAGGGGAACTTGATACTTTTCTTCTC  150

seq1  TTTAAAGAAAGTCCGATGATAAAATTTACTCTTCCCAGTGTGGGATTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGAAAGTCCGATGATAAAATTTACTCTTCCCAGTGTGGGATTTGC  200

seq1  CTCTGTCTGGTATCTGCTGATGTCAGCTTTCCAATCAATAAAAGACTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTGGTATCTGCTGATGTCAGCTTTCCAATCAATAAAAGACTTCC  250

seq1  AGAGAGCTGGAAACCTTAGTCTGTGCCGGTATGTGTGCACCTGTATGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCTGGAAACCTTAGTCTGTGCCGGTATGTGTGCACCTGTATGTGT  300

seq1  GTGTGTGCATGTGTGCATGTGTGCCTGTGTGTGTGTATGTGTGTGCACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCATGTGTGCATGTGTGCCTGTGTGTGTGTATGTGTGTGCACAA  350

seq1  GTGCATGCATGCCTGTGTGTGTATGTATGTGTTTGTGTTTCAAGGTTTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGCATGCCTGTGTGTGTATGTATGTGTTTGTGTTTCAAGGTTTCG  400

seq1  AACTTTACCCTTAAGAGGACTAATTCCCCACAACACAATCCTGTAGCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTACCCTTAAGAGGACTAATTCCCCACAACACAATCCTGTAGCTCT  450

seq1  CATGTCCTCTGTTTCTATGTCAACAGAAATGTGTCCTAGAAAATATTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCTCTGTTTCTATGTCAACAGAAATGTGTCCTAGAAAATATTATA  500

seq1  AAATGTTAAAGGATGTCAGGCATTGAGGCACTCAACTTTAATCCCAGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTAAAGGATGTCAGGCATTGAGGCACTCAACTTTAATCCCAGAAC  550

seq1  TCAGGAGGCAGAGGCAGGTGGATCTCTGTGAGTTCAAGGACTGTCTGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGGCAGAGGCAGGTGGATCTCTGTGAGTTCAAGGACTGTCTGGTC  600

seq1  TACAAAGAGAGTTTCAGGACATTTCATACAAAGAAACCCAGCCTTGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGAGAGTTTCAGGACATTTCATACAAAGAAACCCAGCCTTGAAAA  650

seq1  ACCAAACAAAAATTTTAAAGGATATCTGTGTCTTCTTAGGTAAGTTACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACAAAAATTTTAAAGGATATCTGTGTCTTCTTAGGTAAGTTACCT  700

seq1  AACATCTCTAAAGCCCCATTTCATGTATAAAGCAGGGAAGATCATGCTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTCTAAAGCCCCATTTCATGTATAAAGCAGGGAAGATCATGCTAG  750

seq1  CAATTTTTGCCCATTTCATAGAATTGTTTTGATGATTAAAATGACTAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTTGCCCATTTCATAGAATTGTTTTGATGATTAAAATGACTAAAC  800

seq1  AGATACCATATTTAACAGAATACTCAACCATGTAAC-TCCTTGTGAAGGT  849
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGATACCATATTTAACAGAATACTCAACCATGTAACTTCCTTGTGAAGGT  850

seq1  TTGTTCATGATCACTGTTAGGGACACTTGGTTCTCTGAGACAAGCCACAC  899
      |||||||||||||||||||| ||||||||||||||||||||||| |||||
seq2  TTGTTCATGATCACTGTTAGAGACACTTGGTTCTCTGAGACAAG-CACAC  899

seq1  CTAGCTAGTAAGTTTCAAAATGGAAGTGGCAGGATACATGGACTTTTGGA  949
      |||||||||||||||| |||||||||||||||||||||||||||||||| 
seq2  CTAGCTAGTAAGTTTC-AAATGGAAGTGGCAGGATACATGGACTTTTGGG  948

seq1  ATATATAATTCAGTTAGAATCTATGAATATGAAATGTACAATTTCAAGCA  999
      |||||| |||||| ||||||||||| |||||||||| || | ||||||||
seq2  ATATAT-ATTCAG-TAGAATCTATG-ATATGAAATG-AC-ACTTCAAGCA  993

seq1  TCTTGAATACTTGCCACAACTTAATAGATACTGAGCTGGCATTATGCCAA  1049
      ||||||||||||| | |||||  | |||||||||||||||||||   | |
seq2  TCTTGAATACTTGGCGCAACT--AAAGATACTGAGCTGGCATTA--GCGA  1039

seq1  CAGGTTATAAAGTAGTTTAATAACTTTTGATTATGAGCCCTCCACCCTTA  1099
      |||  ||| |||||| ||||| |||| |||||||||| ||||||||||||
seq2  CAG--TATGAAGTAG-TTAAT-ACTTATGATTATGAG-CCTCCACCCTTA  1084

seq1  AGCCTGCTTGCTGTCTTT  1117
      |  | |  ||||||||||
seq2  AAGC-GTCTGCTGTCTTT  1101