BAC Information

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BAC

Clone NameB6Ng01-003E09
Chromosome3 (Build37)
Map Location 98,640,956 - 98,758,984
singlet/doubletdoublet
Overlap geneHsd3b1, Hao3
Upstream genePde4dip, Sec22b, EG433632, LOC100042975, Notch2, Adam30, LOC622561, Reg4, Hmgcs2, Phgdh, Zfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556
Downstream geneLOC668557, Wars2, Tbx15, M6pr-ps, Spag17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003E09.bB6Ng01-003E09.g
ACCDH841040DH841041
length1,086300
definitionDH841040|Mus musculus domesticus DNA, BAC clone: B6Ng01-003E09, 5' end.DH841041|Mus musculus domesticus DNA, BAC clone: B6Ng01-003E09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,757,899 - 98,758,984)(98,640,956 - 98,641,255)
sequence
gaattcaattagcaaggctaaatgaaggagcaattgacaaaggtgttaag
ttgttgactgttgtctttttgttatattttatttttatttttagatattt
tctttatttacatttcaaatgttatcccctttcctaatttcccctctgaa
aatgccctatcccttccctgcctcccctaatgtcctgaaatcatcacgtt
ttggtcttagatatgttttaaggtttgtgtttggagcttggtgtttcagt
tttaggctcagaaaaggaatatcttcatcattggtgagagaaagtcttat
ttcaagtcacctagttgattttctgagttgaatctgttctgttcactgcc
cccatcttaactgagggtcataaatatcaaatccacagctcatggctatc
tgttgagctatggcgggcctcactattctcctcattgcaatccttgtggc
ccactcatgatattcttgcaatttgaggatgcgagggtagtttcttaaat
tcactatataaatctaaaattctctggaaagtagaagaggttctcagctg
ctatatactttagactcactgcgaaggcttttaggaattggcaatgtagt
cattggtttgaggtcacctacaactaaaaaataaaaaaatgacaaaagat
ttaattcaagtttgccaaccaataggtcatctagtaacatgtaccagaaa
ctcaggggagagcccacattctgctccccgaggcttttctaggcatccca
gaaaggaaggagtgaagtccatggtcagcatagtcaggtgacagctaatg
gaatggagcatctgctttgtagactagaaccttttgctaactttgcccca
tctttacaaagtcaagataaaagagattctttttactgagcagttgtgat
gatgaccttaaatttgtgtttgataattaagtggtaggtaatagatagat
agtcaacaaaataccttttcgtgtgtttcctgtactgcaaatgttctccg
caacagcatgataaaaatactacttgccattcacttttattgcttgactg
atttgacacccaaagattggggtgggtgggattgaa
tttatgtccttcctaaagtcctttatcatcttcatgaaataagagtttag
atctcaatcttgttttaaaggtgtgttgaggtatttaagactttctatgg
tgggagaactgggttctgatgttgccaagtcaaattggtttctgttgctt
ctgttcttatgcttggctctcaccatctggttatttctggtgttatctgg
cctccctgtctccaactggagcctgtccttcctgtgagcctgtgatccta
ctatcctgtgatcctggggagttgagctgtaactggggtgtgggttgtgt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_98757899_98758984
seq2: B6Ng01-003E09.b_48_1133 (reverse)

seq1  TTCAAT-CCACCCACCCAATTCTCTGGGTGTTCAAATCCAGTTCAAGCAA  49
      |||||| |||||||||| | ||| |||||| |||||| ||| ||||||||
seq2  TTCAATCCCACCCACCCCAATCTTTGGGTG-TCAAAT-CAG-TCAAGCAA  47

seq1  T-AAAGTGATTGGCAGGTAGTATTTTTATCATGCTGCTGCGGAGAACATC  98
      | ||||||| ||||| |||||||||||||||||||| |||||||||||| 
seq2  TAAAAGTGAATGGCAAGTAGTATTTTTATCATGCTGTTGCGGAGAACATT  97

seq1  TGCAGTACAGG-AACACACG-AAAGGTATTTTGTTGACTATCTATCTATT  146
      ||||||||||| |||||||| |||||||||||||||||||||||||||||
seq2  TGCAGTACAGGAAACACACGAAAAGGTATTTTGTTGACTATCTATCTATT  147

seq1  ACCTACCACTTAATTATCATACACAAATTTTAGGTCATCATCACAACTGC  196
      ||||||||||||||||||| |||||||||| |||||||||||||||||||
seq2  ACCTACCACTTAATTATCAAACACAAATTTAAGGTCATCATCACAACTGC  197

seq1  TCAGTAAAAGAAATCTCTTTTATCTTGACTTTGTAAAGATGGGGCAAAAG  246
      |||||||||  |||||||||||||||||||||||||||||||||| ||||
seq2  TCAGTAAAAAGAATCTCTTTTATCTTGACTTTGTAAAGATGGGGC-AAAG  246

seq1  TTAGCAAAAGGTTCTAGTCTACAAAGCAGATGCTCCATTCCATTAGCTGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAAAAGGTTCTAGTCTACAAAGCAGATGCTCCATTCCATTAGCTGT  296

seq1  CACCTGACTATGCTGACCATGGACTTCACTCCTTCCTTTCTGGGATGCCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGACTATGCTGACCATGGACTTCACTCCTTCCTTTCTGGGATGCCT  346

seq1  AGAAAAGCCTCGGGGAGCAGAATGTGGGCTCTCCCCTGAGTTTCTGGTAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGCCTCGGGGAGCAGAATGTGGGCTCTCCCCTGAGTTTCTGGTAC  396

seq1  ATGTTACTAGATGACCTATTGGTTGGCAAACTTGAATTAAATCTTTTGTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACTAGATGACCTATTGGTTGGCAAACTTGAATTAAATCTTTTGTC  446

seq1  ATTTTTTTATTTTTTAGTTGTAGGTGACCTCAAACCAATGACTACATTGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTATTTTTTAGTTGTAGGTGACCTCAAACCAATGACTACATTGC  496

seq1  CAATTCCTAAAAGCCTTCGCAGTGAGTCTAAAGTATATAGCAGCTGAGAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCTAAAAGCCTTCGCAGTGAGTCTAAAGTATATAGCAGCTGAGAA  546

seq1  CCTCTTCTACTTTCCAGAGAATTTTAGATTTATATAGTGAATTTAAGAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTACTTTCCAGAGAATTTTAGATTTATATAGTGAATTTAAGAAA  596

seq1  CTACCCTCGCATCCTCAAATTGCAAGAATATCATGAGTGGGCCACAAGGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTCGCATCCTCAAATTGCAAGAATATCATGAGTGGGCCACAAGGA  646

seq1  TTGCAATGAGGAGAATAGTGAGGCCCGCCATAGCTCAACAGATAGCCATG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATGAGGAGAATAGTGAGGCCCGCCATAGCTCAACAGATAGCCATG  696

seq1  AGCTGTGGATTTGATATTTATGACCCTCAGTTAAGATGGGGGCAGTGAAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGGATTTGATATTTATGACCCTCAGTTAAGATGGGGGCAGTGAAC  746

seq1  AGAACAGATTCAACTCAGAAAATCAACTAGGTGACTTGAAATAAGACTTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGATTCAACTCAGAAAATCAACTAGGTGACTTGAAATAAGACTTT  796

seq1  CTCTCACCAATGATGAAGATATTCCTTTTCTGAGCCTAAAACTGAAACAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACCAATGATGAAGATATTCCTTTTCTGAGCCTAAAACTGAAACAC  846

seq1  CAAGCTCCAAACACAAACCTTAAAACATATCTAAGACCAAAACGTGATGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTCCAAACACAAACCTTAAAACATATCTAAGACCAAAACGTGATGA  896

seq1  TTTCAGGACATTAGGGGAGGCAGGGAAGGGATAGGGCATTTTCAGAGGGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGACATTAGGGGAGGCAGGGAAGGGATAGGGCATTTTCAGAGGGG  946

seq1  AAATTAGGAAAGGGGATAACATTTGAAATGTAAATAAAGAAAATATCTAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGGAAAGGGGATAACATTTGAAATGTAAATAAAGAAAATATCTAA  996

seq1  AAATAAAAATAAAATATAACAAAAAGACAACAGTCAACAACTTAACACCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAATAAAATATAACAAAAAGACAACAGTCAACAACTTAACACCT  1046

seq1  TTGTCAATTGCTCCTTCATTTAGCCTTGCTAATTGAATTC  1086
      ||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAATTGCTCCTTCATTTAGCCTTGCTAATTGAATTC  1086

seq1: chr3_98640956_98641255
seq2: B6Ng01-003E09.g_74_373

seq1  TTTATGTCCTTCCTAAAGTCCTTTATCATCTTCATGAAATAAGAGTTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTCCTTCCTAAAGTCCTTTATCATCTTCATGAAATAAGAGTTTAG  50

seq1  ATCTCAATCTTGTTTTAAAGGTGTGTTGAGGTATTTAAGACTTTCTATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAATCTTGTTTTAAAGGTGTGTTGAGGTATTTAAGACTTTCTATGG  100

seq1  TGGGAGAACTGGGTTCTGATGTTGCCAAGTCAAATTGGTTTCTGTTGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAACTGGGTTCTGATGTTGCCAAGTCAAATTGGTTTCTGTTGCTT  150

seq1  CTGTTCTTATGCTTGGCTCTCACCATCTGGTTATTTCTGGTGTTATCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTATGCTTGGCTCTCACCATCTGGTTATTTCTGGTGTTATCTGG  200

seq1  CCTCCCTGTCTCCAACTGGAGCCTGTCCTTCCTGTGAGCCTGTGATCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTGTCTCCAACTGGAGCCTGTCCTTCCTGTGAGCCTGTGATCCTA  250

seq1  CTATCCTGTGATCCTGGGGAGTTGAGCTGTAACTGGGGTGTGGGTTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTGTGATCCTGGGGAGTTGAGCTGTAACTGGGGTGTGGGTTGTGT  300