BAC Information

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BAC

Clone NameB6Ng01-003H10
Chromosome3 (Build37)15 (Build37)
Map Location 3,220,220 - 3,221,279102,121,706 - 102,121,844
singlet/doubletsingletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC667655, LOC100039140, Hnf4g, EG383815, LOC100039157, LOC100039167, LOC667709
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003H10.bB6Ng01-003H10.g
ACCDH841166DH841167
length1,053791
definitionDH841166|Mus musculus domesticus DNA, BAC clone: B6Ng01-003H10, 5' end.DH841167|Mus musculus domesticus DNA, BAC clone: B6Ng01-003H10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(3,220,220 - 3,221,279)(102,121,706 - 102,121,844)
sequence
gaattcagggccctgggtgatgatgtcacaaacctgaatttcctcgacac
ttagtttctatgactttttctggagagaagtgtcctggcccggccagtac
aaagttgaacaatactctgagtagggagtagggctgattctagagaagac
tgaaaaatatgcaagcaacagatactgtaaggtctgcaagtcattaccac
agcagcagtaagtgtatttctcatggcatttttaaattacagttctgtgg
aaggcaaagccacaggctaacagaaacaatttttgaaatcagatatctgt
tcccttgcaaaaccctccctgttctttctaccaagtccaatagaatcatt
atccccttgccttgagcctaacatgcaccgcctcttattgttccatgcct
cagattgcctagaaatctgccaacagaccctaacttacctgactctgcct
ggcaggcagacttttctctcccccactcccccccatgcttcagagaagtg
gcaaatggctcctgacagagaaataagcagataggacatcagcaatggaa
ggaatgattctatccaaaactgtcttggtgaaccaatgtcttcactagag
tcatttataggattgcggcagagaggtgtacaggagtacaagtaaggggt
gacttagaggagcatcaatgatggattacatgagcttgggtgtaaaggag
ctacatcactgaaaaaccccacccagcatgataacaattcatggtgtccc
aacacctgaccaacttcctacttcctgtggcttatgtagtggagggtggg
gtttaggacaggacacagtatgtaaaggctgaagcaagggtcagatatca
tcttttctcatgaagggtattaacagccccattatcatttgtcatagacc
taccatcactgcactgtcttgctgttggttaccatgattgcaacaccaaa
tattttgtagtcatgtgggtacagtggcctgcaccagacagcctggtccc
tagtgagcaaatgaatgaaccctggggaactgatggtagtgatttccacc
cac
gaattcagcatagtgacacactgttggcttatttgaacatcagcagaaaa
attatatgtacgtgcaggtcaaggtgtcagcaacaaacgaatatgggcag
gagttctgtgagttggatgtttatcaatgctagcagagtatctggtcagt
ttatgactttaaatagcatcaaagggaaatgggcagagggaggtgccagg
acagatggctgttgattcagttcagatagccctgttatgttctcacattc
ctctttatctttatggtcaagctgttcccaggaatgattttactatgggg
catacccaggtttgttcttcttcgtcctcagccccaggcagcctctaggc
tcacaaacaaccagcaatttctgagtactttatatgacttacaggtcttg
aaatgtcatctttctttcaggtgagttattcagcagtaagccttcaagat
gacaattgcatctggtgaataaaagttaaagggggatggggttggagaaa
tggctcagaggttaagagcactggttgctcttccagaagtcctgagttca
attcccagcaaccacatgatggctcacaaccatctgtaatgggatccaat
tccctcatctggtgtgtctgaagatagctacagtgtactcatttaaataa
attttttttttgagacagggtttctctgtatagtcctggctgtcctggat
ctcactctgtagaccacgctggcctcaaactcagaattcgcctgcctctg
cttcccaagtgctgggattaaggcatgcaccaccacacctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_3220220_3221279
seq2: B6Ng01-003H10.b_45_1097

seq1  GAATTCAGGGCCCTGGGTGATGATGTCACAAACCTGAATTTCCTCGACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGCCCTGGGTGATGATGTCACAAACCTGAATTTCCTCGACAC  50

seq1  TTAGTTTCTATGACTTTTTCTGGAGAGAAGTGTCCTGGCCCGGCCAGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTCTATGACTTTTTCTGGAGAGAAGTGTCCTGGCCCGGCCAGTAC  100

seq1  AAAGTTGAACAATACTCTGAGTAGGGAGTAGGGCTGATTCTAGAGAAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGAACAATACTCTGAGTAGGGAGTAGGGCTGATTCTAGAGAAGAC  150

seq1  TGAAAAATATGCAAGCAACAGATACTGTAAGGTCTGCAAGTCATTACCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATATGCAAGCAACAGATACTGTAAGGTCTGCAAGTCATTACCAC  200

seq1  AGCAGCAGTAAGTGTATTTCTCATGGCATTTTTAAATTACAGTTCTGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAGTAAGTGTATTTCTCATGGCATTTTTAAATTACAGTTCTGTGG  250

seq1  AAGGCAAAGCCACAGGCTAACAGAAACAATTTTTGAAATCAGATATCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAAGCCACAGGCTAACAGAAACAATTTTTGAAATCAGATATCTGT  300

seq1  TCCCTTGCAAAACCCTCCCTGTTCTTTCTACCAAGTCCAATAGAATCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGCAAAACCCTCCCTGTTCTTTCTACCAAGTCCAATAGAATCATT  350

seq1  ATCCCCTTGCCTTGAGCCTAACATGCACCGCCTCTTATTGTTCCATGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTTGCCTTGAGCCTAACATGCACCGCCTCTTATTGTTCCATGCCT  400

seq1  CAGATTGCCTAGAAATCTGCCAACAGACCCTAACTTACCTGACTCTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTGCCTAGAAATCTGCCAACAGACCCTAACTTACCTGACTCTGCCT  450

seq1  GGCAGGCAGACTTTTCTCTCCCCCACTCCCCCCCATGCTTCAGAGAAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCAGACTTTTCTCTCCCCCACTCCCCCCCATGCTTCAGAGAAGTG  500

seq1  GCAAATGGCTCCTGACAGAGAAATAAGCAGATAGGACATCAGCAATGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGGCTCCTGACAGAGAAATAAGCAGATAGGACATCAGCAATGGAA  550

seq1  GGAATGATTCTATCCAAAACTGTCTTGGTGAACCAATGTCTTCACTAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGATTCTATCCAAAACTGTCTTGGTGAACCAATGTCTTCACTAGAG  600

seq1  TCATTTATAGGATTGCGGCAGAGAGGTGTACAGGAGTACAAGTAAGGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTATAGGATTGCGGCAGAGAGGTGTACAGGAGTACAAGTAAGGGGT  650

seq1  GACTTAGAGGAGCATCAATGATGGATTACATGAGCTTGGGTGTAAAGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAGAGGAGCATCAATGATGGATTACATGAGCTTGGGTGTAAAGGAG  700

seq1  CTACATCACTGAAAAACCCCACCCAGCATGATAACAATTCATGGTGTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCACTGAAAAACCCCACCCAGCATGATAACAATTCATGGTGTCCC  750

seq1  AACACCTGACCAACTTCCTACTTCCTGTGGCTTATGTAGTGGAGGGTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCTGACCAACTTCCTACTTCCTGTGGCTTATGTAGTGGAGGGTGGG  800

seq1  GTTTAGGACAGGACACAGTATGTAAAGGCTGAAGCAAGGGTCAGATATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGACAGGACACAGTATGTAAAGGCTGAAGCAAGGGTCAGATATCA  850

seq1  TCTTTTC-CATGAAGGGGTATTAACAGCCCCATTATCA-TTGTCATAGAC  898
      ||||||| |||||| ||||||||||||||||||||||| |||||||||||
seq2  TCTTTTCTCATGAA-GGGTATTAACAGCCCCATTATCATTTGTCATAGAC  899

seq1  CTACCAATCACTGCACTGTCTTGCTGTTTGGTTACCATGATTGCAACACC  948
      ||||| |||||||||||||||||||| |||||||||||||||||||||||
seq2  CTACC-ATCACTGCACTGTCTTGCTG-TTGGTTACCATGATTGCAACACC  947

seq1  AAAGTATTTTGTAGGTCACTGTGGG-ACAGTGGGCTGCACACAGACAGCC  997
      ||| ||||||||| |||| |||||| ||||||| |||||| |||||||||
seq2  AAA-TATTTTGTA-GTCA-TGTGGGTACAGTGGCCTGCAC-CAGACAGCC  993

seq1  TGGTCTCTAGTGGAGCAAATGTATGGAACCCTGGGGACCCGATGGGTAGT  1047
      ||||| ||||| ||||||||| || |||||||||||| | ||| ||||||
seq2  TGGTCCCTAGT-GAGCAAATGAAT-GAACCCTGGGGAACTGAT-GGTAGT  1040

seq1  GATTTCCACCCAC  1060
      |||||||||||||
seq2  GATTTCCACCCAC  1053

seq1: chr15_102121706_102121844
seq2: B6Ng01-003H10.g_719_854 (reverse)

seq1  CAGGTGTGGTGGTGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCA  50
      |||||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  CAGGTGTGGTGGTGCATGCC-TTAATCCCAGCACTTGGGAAGCAGAGGCA  49

seq1  GGCGGATTTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAG  100
      |||| |  ||||||||| ||||||||| ||||||||| |||||| |||||
seq2  GGCGAA--TTCTGAGTTTGAGGCCAGCGTGGTCTACAGAGTGAGATCCAG  97

seq1  GACAGCCAGGACTATACAGAGAAACCCTGTCTCAAAAAA  139
      |||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCAGGACTATACAGAGAAACCCTGTCTCAAAAAA  136