BAC Information

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BAC

Clone NameB6Ng01-003I06
Chromosome3 (Build37)
Map Location 118,155,386 - 118,310,726
singlet/doubletdoublet
Overlap geneDpyd
Upstream gene4833424O15Rik, EG668759, Snx7, LOC100043260
Downstream geneLOC100043275
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003I06.bB6Ng01-003I06.g
ACCDH841203DH841204
length1,0541,048
definitionDH841203|Mus musculus domesticus DNA, BAC clone: B6Ng01-003I06, 5' end.DH841204|Mus musculus domesticus DNA, BAC clone: B6Ng01-003I06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,155,386 - 118,156,443)(118,309,669 - 118,310,726)
sequence
gaattcattgtgcactagctaaacttatttagatgcatttaaaaccataa
ctggatggttttgataattctcaattgtgaattatatttctttctctgga
aaaccaatgtctgctctatgaatcatagcaatatttacttgcaatgaaaa
atttgatctatgttaattacaaactatttgccaaaatcatacttggaaca
gagttgacatagagatgacagggaatttttgttgttttgtctttgtttgt
tgtctctttggtgccacttgtttattagtataaaaattaggattactttt
gtgcaaaacagagacaaaacagaaaccctataatctagaagatagtgttt
gttttaaagaattaacttctgcttcctttgtttgctttgccacttttttt
tttttttagataagaggaacattcatatgaaactttcttcagtgcctatt
gtaatagaaaattatactaaatttaagtattaaaattcatgctaataaaa
ggcggtttcttttcttctactatatacataataaatcactttctgcagca
gagacatttggccacatttttttttaaacaatgcattaagttttaagttc
cttgagtattagatttcacaaaattatttatatattagtaaatgtatgta
ttgaacacatccatatctgtacaagtgatttatgatgatggtgattctta
cattattaatcagtttttgctatggttattaaattttccccaaggcatct
aatttgaatcaacgaagcatctatgtgagtttctcagtagagcaaatttg
aaatttctactacaaattcatgtaatgggaagtgtgcttggagcttaatg
tggtctcaatttcagtgagttctggtgctctgactccttcacttcttcct
tcgagtggccactcgtcgtggtctaacagcaggctgagagctgctagagt
gcccaccttagtgtacagtgatgcattctgagccccactgtgtagctgcg
acttcagtatcaaagacttcggattgtattctttaaatgtttgtaagatt
gaat
gaattctttttggaattctataaaactctccataatgccaagacaagtga
atagacaaatttttactactaagtaggtgctaacattgccctttctcttt
tgtactactcagttccttacatctatctaaagtaatcatctcctaggtgg
taaatgatttgtagaatatctattacataatgatacaaagagcttcaaat
ggtgtaaaatacacacattgcctatgattaattttgtacttaataaataa
ggatggaataggaaaaagatacatttatgcagcatttgatataaagtggt
aataatgtcatctaccttaaggttttagagtttaaaacctttttgcatgc
attgtataatttaaataacaaacatctactgctacatcctcattttggat
gaataaacaaattaaagctgaataaatacaatatttacttatgtaaggag
gactgagacattctgatgtgattcagtcctcttgtaggattttaattcaa
atttttctacatataaagcctttctatgtctaatgtagaaacttttaacc
acatttaaaaaagcaaatactaaatgtcatctgaataacttattaaagga
tttatattgggtagcaactctgacaacctgaggtcaacccccaggaccca
gtgggtatcagagtaaaaaaaaaaaaaaaacaagtgtgtgctgtactctg
attctttacatgcaccctggcatagtgtaaacacacacacacacacacac
acacacacacacacacacacagagagagagagagagcagaaagagagaga
gagagagagagagagaacacaaagagagatactaaatacaattaaaaatt
aatatcaactcccccaaaatttaaaaataaaactcaatgtgatctcttga
ctatactgtaaaaggtaaacactagagcacttcaggactcatgtagacta
acttcaaacagctggtgagaacacctttaatttatcagaacttgttttag
gaggaagaagaagaggagaagagtaagagaggagaagagaagaagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_118155386_118156443
seq2: B6Ng01-003I06.b_44_1095

seq1  GAATTCATTGTGCACTAGCTAAACTTATTTAGATGCATTTAAAACCATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTGCACTAGCTAAACTTATTTAGATGCATTTAAAACCATAA  50

seq1  CTGGATGGTTTTGATAATTCTCAATTGTGAATTATATTTCTTTCTCTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGGTTTTGATAATTCTCAATTGTGAATTATATTTCTTTCTCTGGA  100

seq1  AAACCAATGTCTGCTCTATGAATCATAGCAATATTTACTTGCAATGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAATGTCTGCTCTATGAATCATAGCAATATTTACTTGCAATGAAAA  150

seq1  ATTTGATCTATGTTAATTACAAACTATTTGCCAAAATCATACTTGGAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATCTATGTTAATTACAAACTATTTGCCAAAATCATACTTGGAACA  200

seq1  GAGTTGACATAGAGATGACAGGGAATTTTTGTTGTTTTGTCTTTGTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGACATAGAGATGACAGGGAATTTTTGTTGTTTTGTCTTTGTTTGT  250

seq1  TGTCTCTTTGGTGCCACTTGTTTATTAGTATAAAAATTAGGATTACTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTTTGGTGCCACTTGTTTATTAGTATAAAAATTAGGATTACTTTT  300

seq1  GTGCAAAACAGAGACAAAACAGAAACCCTATAATCTAGAAGATAGTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAAACAGAGACAAAACAGAAACCCTATAATCTAGAAGATAGTGTTT  350

seq1  GTTTTAAAGAATTAACTTCTGCTTCCTTTGTTTGCTTTGCCACTTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAAGAATTAACTTCTGCTTCCTTTGTTTGCTTTGCCACTTTTTTT  400

seq1  TTTTTTTAGATAAGAGGAACATTCATATGAAACTTTCTTCAGTGCCTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAGATAAGAGGAACATTCATATGAAACTTTCTTCAGTGCCTATT  450

seq1  GTAATAGAAAATTATACTAAATTTAAGTATTAAAATTCATGCTAATAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAGAAAATTATACTAAATTTAAGTATTAAAATTCATGCTAATAAAA  500

seq1  GGCGGTTTCTTTTCTTCTACTATATACATAATAAATCACTTTCTGCAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGTTTCTTTTCTTCTACTATATACATAATAAATCACTTTCTGCAGCA  550

seq1  GAGACATTTGGCCACATTTTTTTTTAAACAATGCATTAAGTTTTAAGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATTTGGCCACATTTTTTTTTAAACAATGCATTAAGTTTTAAGTTC  600

seq1  CTTGAGTATTAGATTTCACAAAATTATTTATATATTAGTAAATGTATGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTATTAGATTTCACAAAATTATTTATATATTAGTAAATGTATGTA  650

seq1  TTGAACACATCCATATCTGTACAAGTGATTTATGATGATGGTGATTCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACACATCCATATCTGTACAAGTGATTTATGATGATGGTGATTCTTA  700

seq1  CATTATTAATCAGTTTTTGCTATGGTTATTAAATTTTCCCCAAGGCATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTAATCAGTTTTTGCTATGGTTATTAAATTTTCCCCAAGGCATCT  750

seq1  AATTTGAATCAACGAAGCATCTATGTGAGTTTCTCAGTAGAGCAAATTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAATCAACGAAGCATCTATGTGAGTTTCTCAGTAGAGCAAATTTG  800

seq1  AAATTTCTACTACAAATTCATGTAAT-GGAAGTGTGCTTGGAGCTTAATG  849
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAATTTCTACTACAAATTCATGTAATGGGAAGTGTGCTTGGAGCTTAATG  850

seq1  TGGTCTCAATTTCAGTGAGTTCTGGTGCTCTGACTCCTTTCACTTCTTCC  899
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGGTCTCAATTTCAGTGAGTTCTGGTGCTCTGACTCC-TTCACTTCTTCC  899

seq1  TTCGAGTGGCCACTCGTCGTGGTCTAACAGCAGGCTGAGAGCTGCTAGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGTGGCCACTCGTCGTGGTCTAACAGCAGGCTGAGAGCTGCTAGAG  949

seq1  TGCCCACCTTAGTGTACAGTGATGCATTCTGAGCCCCACTGTGTAGCTGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACCTTAGTGTACAGTGATGCATTCTGAGCCCCACTGTGTAGCTGC  999

seq1  GGACTTCAGTATTCAAAAGAACTTCGGAATGTATTTCCTTTAAATGTTTG  1049
       |||||||||| |||||   |||||||| ||||||  |||||||||||||
seq2  -GACTTCAGTA-TCAAA--GACTTCGGATTGTATT--CTTTAAATGTTTG  1043

seq1  TAAGATTGA  1058
      |||||||||
seq2  TAAGATTGA  1052

seq1: chr3_118309669_118310726
seq2: B6Ng01-003I06.g_67_1114 (reverse)

seq1  TTTCTTCTTCCTCCTTCTCCTCCTCCTTTACCTCTTCCTCCTCTTCTTCT  50
      ||||||||||     ||| ||||||  ||| ||||| |||||||||||||
seq2  TTTCTTCTTC-----TCTTCTCCTCTCTTA-CTCTT-CTCCTCTTCTTCT  43

seq1  TCCTCCTTAAGACAAGTTCCTGATAAATTAAAGGTTGTTCTCACCAGCTG  100
      |||||| ||| ||||||| ||||||||||||||| |||||||||||||||
seq2  TCCTCC-TAAAACAAGTT-CTGATAAATTAAAGG-TGTTCTCACCAGCTG  90

seq1  TTTGAAGTTAGTCTACATGAGTCCTGAAGTGCTCTAGTGTTTACCTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGTTAGTCTACATGAGTCCTGAAGTGCTCTAGTGTTTACCTTTTA  140

seq1  CAGTATAGTCAAGAGATCACATTGAGTTTTATTTTTAAATTTTGGGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATAGTCAAGAGATCACATTGAGTTTTATTTTTAAATTTTGGGGGAG  190

seq1  TTGATATTAATTTTTAATTGTATTTAGTATCTCTCTTTGTGTTCTCTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATTAATTTTTAATTGTATTTAGTATCTCTCTTTGTGTTCTCTCTC  240

seq1  TCTCTCTCTCTCTCTCTTTCTGCTCTCTCTCTCTCTCTGTGTGTGTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTTTCTGCTCTCTCTCTCTCTCTGTGTGTGTGTGT  290

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTTTACACTATGCCAGGGTGCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTTTACACTATGCCAGGGTGCATG  340

seq1  TAAAGAATCAGAGTACAGCACACACTTGTTTTTTTTTTTTTTTTACTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAATCAGAGTACAGCACACACTTGTTTTTTTTTTTTTTTTACTCTG  390

seq1  ATACCCACTGGGTCCTGGGGGTTGACCTCAGGTTGTCAGAGTTGCTACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCACTGGGTCCTGGGGGTTGACCTCAGGTTGTCAGAGTTGCTACCC  440

seq1  AATATAAATCCTTTAATAAGTTATTCAGATGACATTTAGTATTTGCTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAATCCTTTAATAAGTTATTCAGATGACATTTAGTATTTGCTTTT  490

seq1  TTAAATGTGGTTAAAAGTTTCTACATTAGACATAGAAAGGCTTTATATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGTGGTTAAAAGTTTCTACATTAGACATAGAAAGGCTTTATATGT  540

seq1  AGAAAAATTTGAATTAAAATCCTACAAGAGGACTGAATCACATCAGAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATTTGAATTAAAATCCTACAAGAGGACTGAATCACATCAGAATG  590

seq1  TCTCAGTCCTCCTTACATAAGTAAATATTGTATTTATTCAGCTTTAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTCCTCCTTACATAAGTAAATATTGTATTTATTCAGCTTTAATTT  640

seq1  GTTTATTCATCCAAAATGAGGATGTAGCAGTAGATGTTTGTTATTTAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTCATCCAAAATGAGGATGTAGCAGTAGATGTTTGTTATTTAAAT  690

seq1  TATACAATGCATGCAAAAAGGTTTTAAACTCTAAAACCTTAAGGTAGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAATGCATGCAAAAAGGTTTTAAACTCTAAAACCTTAAGGTAGATG  740

seq1  ACATTATTACCACTTTATATCAAATGCTGCATAAATGTATCTTTTTCCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATTACCACTTTATATCAAATGCTGCATAAATGTATCTTTTTCCTA  790

seq1  TTCCATCCTTATTTATTAAGTACAAAATTAATCATAGGCAATGTGTGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCCTTATTTATTAAGTACAAAATTAATCATAGGCAATGTGTGTAT  840

seq1  TTTACACCATTTGAAGCTCTTTGTATCATTATGTAATAGATATTCTACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACCATTTGAAGCTCTTTGTATCATTATGTAATAGATATTCTACAA  890

seq1  ATCATTTACCACCTAGGAGATGATTACTTTAGATAGATGTAAGGAACTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTACCACCTAGGAGATGATTACTTTAGATAGATGTAAGGAACTGA  940

seq1  GTAGTACAAAAGAGAAAGGGCAATGTTAGCACCTACTTAGTAGTAAAAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTACAAAAGAGAAAGGGCAATGTTAGCACCTACTTAGTAGTAAAAAT  990

seq1  TTGTCTATTCACTTGTCTTGGCATTATGGAGAGTTTTATAGAATTCCAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTATTCACTTGTCTTGGCATTATGGAGAGTTTTATAGAATTCCAAA  1040

seq1  AAGAATTC  1058
      ||||||||
seq2  AAGAATTC  1048