BAC Information

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BAC

Clone NameB6Ng01-003N05
Chromosome3 (Build37)
Map Location 156,408,449 - 156,588,518
singlet/doubletdoublet
Overlap geneNegr1, LOC668853
Upstream geneEG668902, LOC624519, LOC100040901, 4930570G19Rik, LOC100041152
Downstream geneLOC546818, Zranb2, Ptger3, LOC433686, LOC624684, Cth
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003N05.bB6Ng01-003N05.g
ACCDH841417DH841418
length1,1061,158
definitionDH841417|Mus musculus domesticus DNA, BAC clone: B6Ng01-003N05, 5' end.DH841418|Mus musculus domesticus DNA, BAC clone: B6Ng01-003N05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,587,404 - 156,588,518)(156,408,449 - 156,409,623)
sequence
gaattccagatcccacagttctggagctttgacccgagatcctgtacact
tacctttaaattctcccaagtgaacgcaaacttaaacacacacaaattct
agaagcggatttccttgcattaattccctatcgaaagatgtgacttgggt
gtagtatattttcctctgtgcaaatccgagacttgccaagttcctcctag
tgagttgcagccatcagaaagcagaccaagttactcaatcgatacacaat
tgctgagaaacaacatttggataatatctggctttccctggcagcctttg
atggaacttcatttttcatccatgggtgaaactacttggaagacactcaa
taatatttttggttttgttctttttaaaaatgaaataaatgaatctgggg
actcctttggtcctagaagaaaagcagttgatttatgaagcagaaatagc
caactccactctggaggaagccgccacaaccatttaacctccaaaggaaa
aaaataaaaagcctcttttaagatatgtgtattgacatttgaaaaatgct
gaaaaattaattgaaaagatgcttaatgctggggacctgaatgtgttaag
aacaataaggttgtgattttgattataccaatcatctttatggtacagta
cccacagctctgaattattcatttttaacagtcttgaaattaataatgct
ctcttaaattagcattatacttttctgttaaggtcctctaagtgttttag
aggacacaggtaatactcatgccaccataggaaaaaaaaaaaaacccaaa
acactgctttaaagataaggagaattgtctgaagttacaagatggaattc
caggagcctcctgcaggatgattcacagtcttgcacctcactgtgtaata
aggaaccctaactgagtacccagcttctcacagcaccaattccaagcctc
agaggtacttcatagctcatatactggccacaccttcagctcaggacagc
tctcatgtcaatcccacaaggctctcttcttgaactaagctggggcagaa
caatgctgatgttaagagatcagtattctctgaatggctgttctgctcca
cacttt
gaattctggctggaatgttcgcaaagcctatatatgacctccaaagaggt
ttgcagcctgcaaaagagtgcttcccagacttactaaagtttgagagaag
caaatccatgcttggagtaactccttgtgtatacaatgtgtctcacttgg
agtggccaatcaggaagcaagttccaggagccatctggaaaatcttcaat
aacacaccgtaatttggactttgtttctgaatcagtaacggaagctgttt
ggaagatgcctggaaaccctgggaaacaactgatgattgtggttaggctg
agaggagactgagggcaaaggttccccaggataaaagtcctaaaacaatc
tgcaaaatgagggcaagataccaggattcagtggcaaaattatgtagcat
ctgcttttgtggggcagggcatcttgactatagcatactaagaatcaacc
atacgaaagaactttaacaatagcattgaaaatagaatctaaggtactcg
ctgagactaaacttcctgagactgctctgagctgttgccaagtctttcct
ttgccggtttcacacacaatccacatacattcggattcacacctctcttt
ctccccatctcgtccctactacaagttctttctcacattcatgactttaa
ttgcttttgagactcaccgagtttaaccaggatcagctgtgtgaccatag
ttctagaattatccattgaagcctggtgggtgcctccgtgggtacagata
atggtggttcccactgcagaatctatgggtagctagtaggtaaataggga
aggaaagggccctgtaagctctgaccgatccctgactgacagttgatgag
ctcacttttgtgcagcatctgcagcttctgagtccatgccttcactggtt
gcaccatgcccaggagacactcatttcacagccctcctccctgtcctgtg
gctcttatctttctgcagttctctatgagccttagaggggaggtataaat
gctaaatttggcttgggtactccctcctacaggaaaaaaaactaaacaaa
aacaacttgatgctatgacgacattcaacagtcacaggtgaaagaatgcc
acatatgaagtccaccctgtctgagaatatacagggtactttgccattct
ggttaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_156587404_156588518
seq2: B6Ng01-003N05.b_46_1151 (reverse)

seq1  AAAGTGTGGAGCAGAGACAGCCATCCAGAGAATACTGATACTTCTTAAAC  50
      ||||||||||||||| |||||||| ||||||||||||||   |||| |||
seq2  AAAGTGTGGAGCAGA-ACAGCCATTCAGAGAATACTGAT--CTCTT-AAC  46

seq1  ATCAGCCTTTGTTCTGCCCCAGCTTAGTTTCAGGAAGAGAGGCTTGTGGG  100
      ||||| | ||||||||||||||||||| |||| |||||||| ||||||||
seq2  ATCAG-CATTGTTCTGCCCCAGCTTAG-TTCAAGAAGAGAGCCTTGTGGG  94

seq1  ATTGGACATGAGAAGCTGTCCTGAGCTGAAGGTGTGGCCAGTATATGGAG  150
      ||| |||||||| ||||||||||||||||||||||||||||||||| |||
seq2  ATT-GACATGAG-AGCTGTCCTGAGCTGAAGGTGTGGCCAGTATAT-GAG  141

seq1  CTATGAAGTACCTCTGAGGCTTGGAATTGGTGCTGTGAG-AGCTGGGTAC  199
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTATGAAGTACCTCTGAGGCTTGGAATTGGTGCTGTGAGAAGCTGGGTAC  191

seq1  TCAGTTAGGGTTCCTTATTACACAGTGAGGTGCAGGACTGTGAATCATTC  249
      |||||||||||||||||||||||||||||||||| |||||||||||| ||
seq2  TCAGTTAGGGTTCCTTATTACACAGTGAGGTGCAAGACTGTGAATCA-TC  240

seq1  CTGCAGGAGGCTCCTGGAATTCCATCTTGTAACTTCAGACAATTCTCCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGAGGCTCCTGGAATTCCATCTTGTAACTTCAGACAATTCTCCTT  290

seq1  ATCTTTAAAGCAGTGTTTTGGGTTTTTTTTTTTTTCCTATGGTGGCATGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAAAGCAGTGTTTTGGGTTTTTTTTTTTTTCCTATGGTGGCATGA  340

seq1  GTATTACCTGTGTCCTCTAAAACACTTAGAGGACCTTAACAGAAAAGTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTACCTGTGTCCTCTAAAACACTTAGAGGACCTTAACAGAAAAGTAT  390

seq1  AATGCTAATTTAAGAGAGCATTATTAATTTCAAGACTGTTAAAAATGAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTAATTTAAGAGAGCATTATTAATTTCAAGACTGTTAAAAATGAAT  440

seq1  AATTCAGAGCTGTGGGTACTGTACCATAAAGATGATTGGTATAATCAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGAGCTGTGGGTACTGTACCATAAAGATGATTGGTATAATCAAAA  490

seq1  TCACAACCTTATTGTTCTTAACACATTCAGGTCCCCAGCATTAAGCATCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACCTTATTGTTCTTAACACATTCAGGTCCCCAGCATTAAGCATCT  540

seq1  TTTCAATTAATTTTTCAGCATTTTTCAAATGTCAATACACATATCTTAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTAATTTTTCAGCATTTTTCAAATGTCAATACACATATCTTAAA  590

seq1  AGAGGCTTTTTATTTTTTTCCTTTGGAGGTTAAATGGTTGTGGCGGCTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTTTTTATTTTTTTCCTTTGGAGGTTAAATGGTTGTGGCGGCTTC  640

seq1  CTCCAGAGTGGAGTTGGCTATTTCTGCTTCATAAATCAACTGCTTTTCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAGTGGAGTTGGCTATTTCTGCTTCATAAATCAACTGCTTTTCTT  690

seq1  CTAGGACCAAAGGAGTCCCCAGATTCATTTATTTCATTTTTAAAAAGAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACCAAAGGAGTCCCCAGATTCATTTATTTCATTTTTAAAAAGAAC  740

seq1  AAAACCAAAAATATTATTGAGTGTCTTCCAAGTAGTTTCACCCATGGATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAAAATATTATTGAGTGTCTTCCAAGTAGTTTCACCCATGGATG  790

seq1  AAAAATGAAGTTCCATCAAAGGCTGCCAGGGAAAGCCAGATATTATCCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAAGTTCCATCAAAGGCTGCCAGGGAAAGCCAGATATTATCCAA  840

seq1  ATGTTGTTTCTCAGCAATTGTGTATCGATTGAGTAACTTGGTCTGCTTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTTTCTCAGCAATTGTGTATCGATTGAGTAACTTGGTCTGCTTTC  890

seq1  TGATGGCTGCAACTCACTAGGAGGAACTTGGCAAGTCTCGGATTTGCACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGCTGCAACTCACTAGGAGGAACTTGGCAAGTCTCGGATTTGCACA  940

seq1  GAGGAAAATATACTACACCCAAGTCACATCTTTCGATAGGGAATTAATGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAATATACTACACCCAAGTCACATCTTTCGATAGGGAATTAATGC  990

seq1  AAGGAAATCCGCTTCTAGAATTTGTGTGTGTTTAAGTTTGCGTTCACTTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATCCGCTTCTAGAATTTGTGTGTGTTTAAGTTTGCGTTCACTTG  1040

seq1  GGAGAATTTAAAGGTAAGTGTACAGGATCTCGGGTCAAAGCTCCAGAACT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATTTAAAGGTAAGTGTACAGGATCTCGGGTCAAAGCTCCAGAACT  1090

seq1  GTGGGATCTGGAATTC  1115
      ||||||||||||||||
seq2  GTGGGATCTGGAATTC  1106

seq1: chr3_156408449_156409623
seq2: B6Ng01-003N05.g_68_1225

seq1  GAATTCTGGCTGGAATGTTCGCAAAGCCTATATATGACCTCCAAAGAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCTGGAATGTTCGCAAAGCCTATATATGACCTCCAAAGAGGT  50

seq1  TTGCAGCCTGCAAAAGAGTGCTTCCCAGACTTACTAAAGTTTGAGAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGCCTGCAAAAGAGTGCTTCCCAGACTTACTAAAGTTTGAGAGAAG  100

seq1  CAAATCCATGCTTGGAGTAACTCCTTGTGTATACAATGTGTCTCACTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCATGCTTGGAGTAACTCCTTGTGTATACAATGTGTCTCACTTGG  150

seq1  AGTGGCCAATCAGGAAGCAAGTTCCAGGAGCCATCTGGAAAATCTTCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCCAATCAGGAAGCAAGTTCCAGGAGCCATCTGGAAAATCTTCAAT  200

seq1  AACACACCGTAATTTGGACTTTGTTTCTGAATCAGTAACGGAAGCTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACCGTAATTTGGACTTTGTTTCTGAATCAGTAACGGAAGCTGTTT  250

seq1  GGAAGATGCCTGGAAACCCTGGGAAACAACTGATGATTGTGGTTAGGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATGCCTGGAAACCCTGGGAAACAACTGATGATTGTGGTTAGGCTG  300

seq1  AGAGGAGACTGAGGGCAAAGGTTCCCCAGGATAAAAGTCCTAAAACAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGACTGAGGGCAAAGGTTCCCCAGGATAAAAGTCCTAAAACAATC  350

seq1  TGCAAAATGAGGGCAAGATACCAGGATTCAGTGGCAAAATTATGTAGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAATGAGGGCAAGATACCAGGATTCAGTGGCAAAATTATGTAGCAT  400

seq1  CTGCTTTTGTGGGGCAGGGCATCTTGACTATAGCATACTAAGAATCAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTGTGGGGCAGGGCATCTTGACTATAGCATACTAAGAATCAACC  450

seq1  ATACGAAAGAACTTTAACAATAGCATTGAAAATAGAATCTAAGGTACTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGAAAGAACTTTAACAATAGCATTGAAAATAGAATCTAAGGTACTCG  500

seq1  CTGAGACTAAACTTCCTGAGACTGCTCTGAGCTGTTGCCAAGTCTTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACTAAACTTCCTGAGACTGCTCTGAGCTGTTGCCAAGTCTTTCCT  550

seq1  TTGCCGGTTTCACACACAATCCACATACATTCGGATTCACACCTCTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCGGTTTCACACACAATCCACATACATTCGGATTCACACCTCTCTTT  600

seq1  CTCCCCATCTCGTCCCTACTACAAGTTCTTTCTCACATTCATGACTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCATCTCGTCCCTACTACAAGTTCTTTCTCACATTCATGACTTTAA  650

seq1  TTGCTTTTGAGACTCACCGAGTTTAACCAGGATCAGCTGTGTGACCATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTGAGACTCACCGAGTTTAACCAGGATCAGCTGTGTGACCATAG  700

seq1  TTCTAGAATTATCCATTGAAGCCTGGTGGGTGCCTCCGTGGGTACAGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAATTATCCATTGAAGCCTGGTGGGTGCCTCCGTGGGTACAGATA  750

seq1  ATGGTGGTTCCCACTGCAGAATCTATGGGTAGCTAGTAGGTAAATAGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGTTCCCACTGCAGAATCTATGGGTAGCTAGTAGGTAAATAGGGA  800

seq1  AGGAAAGGGCCCTGTAAGCTCTGACCGATCCCTGACTGACAGTTGATGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGGCCCTGTAAGCTCTGACCGATCCCTGACTGACAGTTGATGAG  850

seq1  CTCACTTTTGTGCAGCATCTGCAGCTTCTGAGTCCATGCCTTCACTGGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTTTGTGCAGCATCTGCAGCTTCTGAGTCCATGCCTTCACTGGTT  900

seq1  GCACCATGCCCAGGAGACACTCATTTCACAGCCCTCCTCCCTGTCCTGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCATGCCCAGGAGACACTCATTTCACAGCCCTCCTCCCTGTCCTGTG  950

seq1  GCTCTTATTCTTTCTGCAGTTCTCTATGAGCCTTAGAGGGGAGGTATAAA  1000
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTA-TCTTTCTGCAGTTCTCTATGAGCCTTAGAGGGGAGGTATAAA  999

seq1  TGCTAAATTTGGGCCTGGGTACTCACTCCTTACAAGAAAAAAAAAACCAA  1050
      |||||||||| ||| ||||||||| |||| |||| |  ||||||||| ||
seq2  TGCTAAATTT-GGCTTGGGTACTCCCTCC-TACAGG--AAAAAAAACTAA  1045

seq1  ACAAAAACAAAACTTGAATGCTTATGACGACATTCCAACAGTTCACCAGG  1100
      ||||||||  |||||| |||| |||||||||||| |||||| ||| ||||
seq2  ACAAAAAC--AACTTG-ATGC-TATGACGACATT-CAACAG-TCA-CAGG  1088

seq1  TGAAAGAATGCCCACATATGAGAGTCCACCCTG-CTGAAGATATACAGGT  1149
      |||||||||| |||||||||| ||||||||||| ||||  ||||||||| 
seq2  TGAAAGAATG-CCACATATGA-AGTCCACCCTGTCTGAGAATATACAGGG  1136

seq1  GACTTTTGCCACTTCTTTGGTTAGGT  1175
       || ||||||| |||  |||||||||
seq2  TAC-TTTGCCA-TTC--TGGTTAGGT  1158