BAC Information

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BAC

Clone NameB6Ng01-003N09
Chromosome3 (Build37)
Map Location 114,920,899 - 114,922,027
singlet/doubletsinglet
Overlap genenone
Upstream geneCol11a1, LOC100043220, Olfm3
Downstream geneEG546808, Edg1, Dph5, LOC626061, Slc30a7, Extl2, Vcam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003N09.bB6Ng01-003N09.g
ACCDH841425DH841426
length1281,104
definitionDH841425|Mus musculus domesticus DNA, BAC clone: B6Ng01-003N09, 5' end.DH841426|Mus musculus domesticus DNA, BAC clone: B6Ng01-003N09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
taggacagccagaacgatatagtgtttccctgtctcagcataggaaggaa
ggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaga
tagaaagaaagagaggggcagggggaga
gaattccagaagattaagacagggagatctctgagttcatgttcatctgg
gaataaagttgtggtggtatacacctttaatctggtctacaccttctgct
ggagacctacatatggacattggaagaaggaagactctctctctctctct
ccttcaactgcttgctgtgtgggactgagcaactgctagatcctttaact
tcccctcacagctgctgctgaccattgttgggagttggactgcagactgt
aagtcatcaacaaattcctttactatatagagactacccataagtactgt
gactctagagaaccctgactaatactcccagtaatctcagataattgtcc
gcttgcttctatactgattctgattctatatatgtttatatatagaatat
atattatatataagtacacacctttctcctgaaggatatgagatctaaac
aataagagcagtgttagaaaaatgaatagaacacattcagtaagcagtgg
aatcatcaataaattctttgtatctatttacatatctatttatctatcta
gcatcagagcttttattggtacgagaacaggggaagaacatggaacaggg
aagccaaccatctcaccacactcccccatgttacaaaaatgagaagtctg
gtctaagtatagaaactgaggtaagaggagctgaaatattatggcagaga
acactagggtttctaaactcatgtttggattctaagtgttggctgagggg
gaactgactcggttcagatgaatattttagagatttggtgacttcagtag
gcatcagcaagctgggaaatggatgtctccacgtggtaggaactactatg
gtaatttagaagaagagagtttctgagagttcagagaaatttcattagca
cagagtaggagagcagggaggtttgaaattacttattggatagaggcatg
ggtgtgggtttgatgtttcaaactgtttcaggagatgtttgggattgtat
tgtgagtgcaacacatgtatatcattctgagactgtggtatagtggcagc
agggattgattctatggcattaaaccttaagtgtctgagacagaaagagg
atta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_114920899_114922027
seq2: B6Ng01-003N09.g_68_1171 (reverse)

seq1  TAATCCTCTTTCTCTGTCCCTCAGACACCTAAAGTTTAAAATGCCATAGA  50
      ||||||||||||| |    ||||||||| ||| ||||  |||||||||||
seq2  TAATCCTCTTTCTGT----CTCAGACACTTAAGGTTT--AATGCCATAGA  44

seq1  AATCACAATCCCTGCTGCCACTATACCACATGTCTTCAGGAATTGATATT  100
      |    ||||||||||||||||||||||||| ||| ||||  | ||||| |
seq2  A---TCAATCCCTGCTGCCACTATACCACA-GTC-TCAG--AATGATA-T  86

seq1  ACATGTGTTTGCACTCACAATACAATTCCCAAACATCTTCCCTTGAAAAC  150
      ||||||| ||||||||||||||||| ||||||||||||  |||   ||||
seq2  ACATGTG-TTGCACTCACAATACAA-TCCCAAACATCT--CCT--GAAAC  130

seq1  AGTTTGAAACATCAAACCCACACCCATGCCTTCTATCCAATAAGTAATTT  200
      |||||||||||||||||||||||||||||| |||||||||||||||| ||
seq2  AGTTTGAAACATCAAACCCACACCCATGCC-TCTATCCAATAAGTAA-TT  178

seq1  TCAAACCTCCCTTGCTCTCCTACCTCTGTGCTAATGAAATTTTCTCTGAA  250
      ||||||||||| |||||||||| |||||||||||||||| ||||||||||
seq2  TCAAACCTCCC-TGCTCTCCTA-CTCTGTGCTAATGAAA-TTTCTCTGAA  225

seq1  CTCTCAGAAACTCTCTTCTTCTAAATTACCATAGTAGTTCCTACCACGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGAAACTCTCTTCTTCTAAATTACCATAGTAGTTCCTACCACGTG  275

seq1  GAGACATCCATTTCCCAGCTTGCTGATGCCTACTGAAGTCACCAAATCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATCCATTTCCCAGCTTGCTGATGCCTACTGAAGTCACCAAATCTC  325

seq1  TAAAATATTCATCTGAACCGAGTCAGTTCCCCCTCAGCCAACACTTAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATTCATCTGAACCGAGTCAGTTCCCCCTCAGCCAACACTTAGAA  375

seq1  TCCAAACATGAGTTTAGAAACCCTAGTGTTCTCTGCCATAATATTTCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACATGAGTTTAGAAACCCTAGTGTTCTCTGCCATAATATTTCAGC  425

seq1  TCCTCTTACCTCAGTTTCTATACTTAGACCAGACTTCTCATTTTTGTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTACCTCAGTTTCTATACTTAGACCAGACTTCTCATTTTTGTAAC  475

seq1  ATGGGGGAGTGTGGTGAGATGGTTGGCTTCCCTGTTCCATGTTCTTCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGGAGTGTGGTGAGATGGTTGGCTTCCCTGTTCCATGTTCTTCCCC  525

seq1  TGTTCTCGTACCAATAAAAGCTCTGATGCTAGATAGATAAATAGATATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCGTACCAATAAAAGCTCTGATGCTAGATAGATAAATAGATATGT  575

seq1  AAATAGATACAAAGAATTTATTGATGATTCCACTGCTTACTGAATGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGATACAAAGAATTTATTGATGATTCCACTGCTTACTGAATGTGTT  625

seq1  CTATTCATTTTTCTAACACTGCTCTTATTGTTTAGATCTCATATCCTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCATTTTTCTAACACTGCTCTTATTGTTTAGATCTCATATCCTTCA  675

seq1  GGAGAAAGGTGTGTACTTATATATAATATATATTCTATATATAAACATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAGGTGTGTACTTATATATAATATATATTCTATATATAAACATAT  725

seq1  ATAGAATCAGAATCAGTATAGAAGCAAGCGGACAATTATCTGAGATTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATCAGAATCAGTATAGAAGCAAGCGGACAATTATCTGAGATTACT  775

seq1  GGGAGTATTAGTCAGGGTTCTCTAGAGTCACAGTACTTATGGGTAGTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTATTAGTCAGGGTTCTCTAGAGTCACAGTACTTATGGGTAGTCTC  825

seq1  TATATAGTAAAGGAATTTGTTGATGACTTACAGTCTGCAGTCCAACTCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGTAAAGGAATTTGTTGATGACTTACAGTCTGCAGTCCAACTCCC  875

seq1  AACAATGGTCAGCAGCAGCTGTGAGGGGAAGTTAAAGGATCTAGCAGTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGGTCAGCAGCAGCTGTGAGGGGAAGTTAAAGGATCTAGCAGTTG  925

seq1  CTCAGTCCCACACAGCAAGCAGTTGAAGGAGAGAGAGAGAGAGAGTCTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCCCACACAGCAAGCAGTTGAAGGAGAGAGAGAGAGAGAGTCTTC  975

seq1  CTTCTTCCAATGTCCATATGTAGGTCTCCAGCAGAAGGTGTAGACCAGAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCCAATGTCCATATGTAGGTCTCCAGCAGAAGGTGTAGACCAGAT  1025

seq1  TAAAGGTGTATACCACCACAACTTTATTCCCAGATGAACATGAACTCAGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTGTATACCACCACAACTTTATTCCCAGATGAACATGAACTCAGA  1075

seq1  GATCTCCCTGTCTTAATCTTCTGGAATTC  1129
      |||||||||||||||||||||||||||||
seq2  GATCTCCCTGTCTTAATCTTCTGGAATTC  1104