BAC Information

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BAC

Clone NameB6Ng01-004C07
Chromosome3 (Build37)
Map Location 138,310,806 - 138,400,977
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668874, H2afz, Dnajb14, Map2k1ip1, Dapp1, EG329763, LOC100039528, Mttp, Rg9mtd2, 4930579F01Rik, Adh7, Adh1, Adh6a, LOC639769, Adh4, Adh5, Metap1, EG383925, EG668879, Eif4e, EG545570, LOC668881, LOC668882, Ppia-ps3_1437.1
Downstream geneTspan5, LOC620771, Rap1gds1, EG229879, B930007M17Rik, LOC100039840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004C07.bB6Ng01-004C07.g
ACCDH841635DH841636
length1,1241,079
definitionDH841635|Mus musculus domesticus DNA, BAC clone: B6Ng01-004C07, 5' end.DH841636|Mus musculus domesticus DNA, BAC clone: B6Ng01-004C07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,399,846 - 138,400,977)(138,310,806 - 138,311,884)
sequence
gaattccacatcttccttaatgagcaggcacagagcatcaggtctgaaac
ggagtcgctcatgacatcttacactaatggctagtcacaagaaggaacaa
acttacaatttaaaatatcctcagcaaaataatgaggtgtccacctagtc
atccagatatatgccccactccacgagataaccatttcccttttgactac
gatagaactgggcacatcctttccctcccaaacacaatgccatcacaagg
agcctccacacacagtgacacccaccatgactgtggaattgtaggctatt
ttgttttcgtgtttctgatgtccaattttatatatatatacatatatata
tgataattagcaaattataactaaagacatacatcaaaaggcagtcatat
ctcagtcatatctcatacagctttatcacaatccaataaagtctgactta
ctttgaggcgaaaagagatctgtgggggattttgctacaaccatctcatt
tataattctgaggttgaaagctgcttaataagtttaattactaaagagct
aatgggttttttaagtggcagtgcaaacaggtaaagcatgttctaacagt
tgcgttgatgaacagcaagatacggcagtggcagaccctgcatttagcag
cttgcccgcctgccttccatcttgtttcagtcttcctgccctatcttcag
ccctccctccactctgactccttccctgaggcctctgtatttccctaagc
tctgaatttcccattgtctactttgtagcccatgctgctaatggcctgct
atattgccttcttttacccagaaccggcgtttgcaggtgcagaggcctcc
cttttttttttttttttttttctctctgccatgtaaggagaatttggggg
gaatctttcctgtatttaagaatgacatcccattgcccttgactccacta
tgctgcatgtgacagcaggtccctggtataaaaaccacactaggacaaca
gagaggaaaatgaaggatctaggctgtcacacttacagtgcatggctgat
tttatcaatctgaggaaccctctacccatgtcatcactttttaggtttgg
acactttggaagaggtgactttct
gaattcagttcagaagttgtgaactctgtctcgtgttgttcatactgttc
aaggacctaactccacttatggcattctcttctccctccctttaatggtt
ttgtcatctgcatccacaaggtctgtcatttattagccccactccctagg
aaagtatacactcttggctcaaagctcagactcaaagcattgtgccctac
acagtgtctgcgcaagggacatctgatgtttaagctcacacacctctgtc
tctcggtaaccagtctcatttccctgcccccacagagggaagatcatatt
gggcttttctctgagtttttactgaaataaaaagcaaactgattcattac
ctttcaagaagcaaatgaagagacaagatttcagaattaaaatggaaaac
ttatgattagtcttagacggttgtaagatggcagagagagtggattttca
tgtgtttaggtgtgtttctttggtcctcaatgggtgtctgcagttacttt
gaagtctgtgggcataaagaaaggattgtatctgtgcagagcagaggttc
tcaagctgtgtgtcacaacacaagtttgtgttggcaaacttctatctcca
agaatatttacattactaatcataacagtagcaaaattactgttatgaag
tagcaccaaaaataattttatggttggagggtcaccacaacacaaggagc
tgtattaaagtgtcgcagcattgggaagattaaaagccacagtactggat
ggtgggggattgtatcgtctggaggcaagactaagcaacgatgcgatgcc
cgcggaaagtcaccactaagtaatcagctgctctgggttcagacgaagac
gacgacgagccacttcatttgctgcctggggagatttttattttaatgga
gatcgttaacagttggaactagttacacggggagaatctagattctttct
tcaaggtcattaaaccaaaacttcgttcagtgactaggctgttctgctcc
ggtccttatttgaggaggagggacattctcctcatttttacctcaggggg
aaaaaaataatttcatggctttagttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_138399846_138400977
seq2: B6Ng01-004C07.b_46_1169 (reverse)

seq1  AGAAATGTCACCTTCTCTCCAAGTGTCAAAACTAAAAAAGTGATGACATG  50
      ||||| |||||| |||  | ||||||| ||||  ||||||||||||||||
seq2  AGAAA-GTCACC-TCTTCCAAAGTGTCCAAACCTAAAAAGTGATGACATG  48

seq1  GGTAGAGTGTCCTTCAGGATTGGGTAGATCAGCCATGCACTGT-AGTGTG  99
      ||||||| || | ||| |||||   | |||||||||||||||| ||||||
seq2  GGTAGAGGGTTCCTCA-GATTGATAAAATCAGCCATGCACTGTAAGTGTG  97

seq1  ACAGCCTAGATTCCTTCATTTTTCCTCTCTGTTGTCCTTAGTGTGGTTTT  149
      |||||||||| ||||||| |||||||||||||||||| ||||||||||||
seq2  ACAGCCTAGA-TCCTTCA-TTTTCCTCTCTGTTGTCC-TAGTGTGGTTTT  144

seq1  TATTACCAGGGACCTGCTGTCACATGCAGCATAGTGGAGTTCAAGGGCAA  199
      || |||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TA-TACCAGGGACCTGCTGTCACATGCAGCATAGTGGAG-TCAAGGGCAA  192

seq1  TGGGATGTCATTTCTTAAATACAGG-AAGATTCCCCCCAAATTCTCCTTA  248
      |||||||||| |||||||||||||| ||||||||||||||||||||||||
seq2  TGGGATGTCA-TTCTTAAATACAGGAAAGATTCCCCCCAAATTCTCCTTA  241

seq1  CATGGCAGAGAGAAAAAAAAAAAAAAAAAAAAAAGGAGGCCTCTGCACCT  298
      |||||||||||| |||||||||||||||||||| ||||||||||||||||
seq2  CATGGCAGAGAG-AAAAAAAAAAAAAAAAAAAAGGGAGGCCTCTGCACCT  290

seq1  GCAAACGCCGGTTCTGGGTAAAAGAAGGCAATATAGCAGGCCATTAGCAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACGCCGGTTCTGGGTAAAAGAAGGCAATATAGCAGGCCATTAGCAG  340

seq1  CATGGGCTACAAAGTAGACAATGGGAAATTCAGAGCTTAGGGAAATACAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGCTACAAAGTAGACAATGGGAAATTCAGAGCTTAGGGAAATACAG  390

seq1  AGGCCTCAGGGAAGGAGTCAGAGTGGAGGGAGGGCTGAAGATAGGGCAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTCAGGGAAGGAGTCAGAGTGGAGGGAGGGCTGAAGATAGGGCAGG  440

seq1  AAGACTGAAACAAGATGGAAGGCAGGCGGGCAAGCTGCTAAATGCAGGGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGAAACAAGATGGAAGGCAGGCGGGCAAGCTGCTAAATGCAGGGT  490

seq1  CTGCCACTGCCGTATCTTGCTGTTCATCAACGCAACTGTTAGAACATGCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACTGCCGTATCTTGCTGTTCATCAACGCAACTGTTAGAACATGCT  540

seq1  TTACCTGTTTGCACTGCCACTTAAAAAACCCATTAGCTCTTTAGTAATTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGTTTGCACTGCCACTTAAAAAACCCATTAGCTCTTTAGTAATTA  590

seq1  AACTTATTAAGCAGCTTTCAACCTCAGAATTATAAATGAGATGGTTGTAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATTAAGCAGCTTTCAACCTCAGAATTATAAATGAGATGGTTGTAG  640

seq1  CAAAATCCCCCACAGATCTCTTTTCGCCTCAAAGTAAGTCAGACTTTATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCCCCCACAGATCTCTTTTCGCCTCAAAGTAAGTCAGACTTTATT  690

seq1  GGATTGTGATAAAGCTGTATGAGATATGACTGAGATATGACTGCCTTTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGTGATAAAGCTGTATGAGATATGACTGAGATATGACTGCCTTTTG  740

seq1  ATGTATGTCTTTAGTTATAATTTGCTAATTATCATATATATATGTATATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTCTTTAGTTATAATTTGCTAATTATCATATATATATGTATATA  790

seq1  TATATAAAATTGGACATCAGAAACACGAAAACAAAATAGCCTACAATTCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAAATTGGACATCAGAAACACGAAAACAAAATAGCCTACAATTCC  840

seq1  ACAGTCATGGTGGGTGTCACTGTGTGTGGAGGCTCCTTGTGATGGCATTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCATGGTGGGTGTCACTGTGTGTGGAGGCTCCTTGTGATGGCATTG  890

seq1  TGTTTGGGAGGGAAAGGATGTGCCCAGTTCTATCGTAGTCAAAAGGGAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGGAGGGAAAGGATGTGCCCAGTTCTATCGTAGTCAAAAGGGAAA  940

seq1  TGGTTATCTCGTGGAGTGGGGCATATATCTGGATGACTAGGTGGACACCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATCTCGTGGAGTGGGGCATATATCTGGATGACTAGGTGGACACCT  990

seq1  CATTATTTTGCTGAGGATATTTTAAATTGTAAGTTTGTTCCTTCTTGTGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTTGCTGAGGATATTTTAAATTGTAAGTTTGTTCCTTCTTGTGA  1040

seq1  CTAGCCATTAGTGTAAGATGTCATGAGCGACTCCGTTTCAGACCTGATGC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCATTAGTGTAAGATGTCATGAGCGACTCCGTTTCAGACCTGATGC  1090

seq1  TCTGTGCCTGCTCATTAAGGAAGATGTGGAATTC  1132
      ||||||||||||||||||||||||||||||||||
seq2  TCTGTGCCTGCTCATTAAGGAAGATGTGGAATTC  1124

seq1: chr3_138310806_138311884
seq2: B6Ng01-004C07.g_67_1145

seq1  GAATTCAGTTCAGAAGTTGTGAACTCTGTCTCGTGTTGTTCATACTGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCAGAAGTTGTGAACTCTGTCTCGTGTTGTTCATACTGTTC  50

seq1  AAGGACCTAACTCCACTTATGGCATTCTCTTCTCCCTCCCTTTAATGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACCTAACTCCACTTATGGCATTCTCTTCTCCCTCCCTTTAATGGTT  100

seq1  TTGTCATCTGCATCCACAAGGTCTGTCATTTATTAGCCCCACTCCCTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATCTGCATCCACAAGGTCTGTCATTTATTAGCCCCACTCCCTAGG  150

seq1  AAAGTATACACTCTTGGCTCAAAGCTCAGACTCAAAGCATTGTGCCCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATACACTCTTGGCTCAAAGCTCAGACTCAAAGCATTGTGCCCTAC  200

seq1  ACAGTGTCTGCGCAAGGGACATCTGATGTTTAAGCTCACACACCTCTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTCTGCGCAAGGGACATCTGATGTTTAAGCTCACACACCTCTGTC  250

seq1  TCTCGGTAACCAGTCTCATTTCCCTGCCCCCACAGAGGGAAGATCATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGGTAACCAGTCTCATTTCCCTGCCCCCACAGAGGGAAGATCATATT  300

seq1  GGGCTTTTCTCTGAGTTTTTACTGAAATAAAAAGCAAACTGATTCATTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTTCTCTGAGTTTTTACTGAAATAAAAAGCAAACTGATTCATTAC  350

seq1  CTTTCAAGAAGCAAATGAAGAGACAAGATTTCAGAATTAAAATGGAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAGAAGCAAATGAAGAGACAAGATTTCAGAATTAAAATGGAAAAC  400

seq1  TTATGATTAGTCTTAGACGGTTGTAAGATGGCAGAGAGAGTGGATTTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATTAGTCTTAGACGGTTGTAAGATGGCAGAGAGAGTGGATTTTCA  450

seq1  TGTGTTTAGGTGTGTTTCTTTGGTCCTCAATGGGTGTCTGCAGTTACTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTAGGTGTGTTTCTTTGGTCCTCAATGGGTGTCTGCAGTTACTTT  500

seq1  GAAGTCTGTGGGCATAAAGAAAGGATTGTATCTGTGCAGAGCAGAGGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTGTGGGCATAAAGAAAGGATTGTATCTGTGCAGAGCAGAGGTTC  550

seq1  TCAAGCTGTGTGTCACAACACAAGTTTGTGTTGGCAAACTTCTATCTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCTGTGTGTCACAACACAAGTTTGTGTTGGCAAACTTCTATCTCCA  600

seq1  AGAATATTTACATTACTAATCATAACAGTAGCAAAATTACTGTTATGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATTTACATTACTAATCATAACAGTAGCAAAATTACTGTTATGAAG  650

seq1  TAGCACCAAAAATAATTTTATGGTTGGAGGGTCACCACAACACAAGGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACCAAAAATAATTTTATGGTTGGAGGGTCACCACAACACAAGGAGC  700

seq1  TGTATTAAAGTGTCGCAGCATTGGGAAGATTAAAAGCCACAGTACTGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTAAAGTGTCGCAGCATTGGGAAGATTAAAAGCCACAGTACTGGAT  750

seq1  GGT-GGGGATTGTATCGTCTGGAGGCAAGACTAAGCAACGATGCGATGCC  799
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGGATTGTATCGTCTGGAGGCAAGACTAAGCAACGATGCGATGCC  800

seq1  CGCGGAAAGTCACCACTAAGTAATCAGCTGCTCTGGGTTCAGACGAAGAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGGAAAGTCACCACTAAGTAATCAGCTGCTCTGGGTTCAGACGAAGAC  850

seq1  GACGACGAGCCACTTCATTTGCTGCCT-GGGAGATTTTTATTTTAATGGA  898
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GACGACGAGCCACTTCATTTGCTGCCTGGGGAGATTTTTATTTTAATGGA  900

seq1  GATCGTTAACAGTTGGAACAAGTTACACGGGGAGAATCTAGAATCTTTTC  948
      ||||||||||||||||||| |||||||||||||||||||||| |||||  
seq2  GATCGTTAACAGTTGGAACTAGTTACACGGGGAGAATCTAGATTCTTTCT  950

seq1  TCAGGGTCATTAAAACAAAAC-TCG-TCAGTGACTAGCTGGTTCTGCCCC  996
      ||| |||||||||| |||||| ||| |||||||||||   ||||||| ||
seq2  TCAAGGTCATTAAACCAAAACTTCGTTCAGTGACTAGGCTGTTCTGCTCC  1000

seq1  GGTCCTTATTGAAGGAGGAGGGGACATTTCTCCTCTATTTTTACCTCAAG  1046
      ||||||||||  ||||||| |||||| |||||||| ||||||||||| ||
seq2  GGTCCTTATTTGAGGAGGA-GGGACA-TTCTCCTC-ATTTTTACCTC-AG  1046

seq1  GGGGATAAAAAAAAGTTCCTGGGCTTAGTTATT  1079
      ||||| ||||| || ||| |||  |||||||||
seq2  GGGGAAAAAAATAATTTCATGGCTTTAGTTATT  1079