BAC Information

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BAC

Clone NameB6Ng01-004E20
Chromosome3 (Build37)
Map Location 57,375,569 - 57,376,571
singlet/doubletsinglet
Overlap geneWwtr1
Upstream geneLOC100040139, LOC666585, Tm4sf1, LOC383862, Tm4sf4
Downstream geneCommd2, Gm410, EG623114, Rnf13, LOC675537, Pfn2, EG433594, LOC100040216, 4921539H07Rik, Tsc22d2, D3Ucla1, Eif2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004E20.bB6Ng01-004E20.g
ACCDH841753DH841754
length7701,003
definitionDH841753|Mus musculus domesticus DNA, BAC clone: B6Ng01-004E20, 5' end.DH841754|Mus musculus domesticus DNA, BAC clone: B6Ng01-004E20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccaaatggcagataaacacctgaaaaaatg
ttcaacatccttaatcatcaaggaaatgaaaatcaaaacaaccctaagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaaggggaacactcctccattgttggta
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccagaggatccccgcaattccctctcctgg
ggccatatccaaaagatgtcccaaaccggtaaaaaaggaaccttgctccc
ctttgttcatagcagccttattttataatagcccagaaacctggaaaaaa
accccaaattgccccctcaaacaaaggaatgggatacagaaaaattgggg
aacttttccccaaagggaaatccaccccagctttttaaaaaaaatgaatt
tttgaaatttcctagggaaaatggagggacccggggggggatcatccctg
ggtggggaaacccattcccaaaggaactcccccaaatatttccccccgga
aaggggaaattacccccaaaattttgtatccccaaaatttagaccctttt
ttttaacccttgaattttaaaaaaaaaaaaacccaagggggaacctttcc
ccccctcctttagatgagaaaaaaacactctcggagaggtaaattgacat
atatatttgtgttctttcaa
gaattcttgattccttttagagctttgtttgaactttgagtaaggtacgt
gttctgtgccacactttgttacacggccttaagaaaaatggtagctgttc
accctgatttcattctcttggaacccatccatttctcaaagtgggactgg
caggagactcccattcttgactatggggagctcaaggctctgtcagtcag
aaatcaaaggactttataatcaacagggatcagtttgagagttttggggt
ttgttgtttgtgtgtgtgcgttttgttttgttttccaagaaagggtttct
gtgtgtgtagccctggctgtcttggaactagctccgttgaccaggctggc
ctccaacgtagcagtttgagggttttagtgacttttgtattttatctatc
ctagaggaggatgaaggtgtgatttggcagaagtcatgttttttaacggt
gatatctgactgaaacgattccatctatttcaaagcgggttttctcttcc
ctttcaaaactccccctttgcctatgccacctgcaaagctgaacagtggc
tttatgggaagtggagctgagacatccaagcttttaacaatcctttgccg
ttttcttaggtaggatagattactcctaggtacatgttgtcattgctttc
tgttacctttctttttaaaacagggtctcaccttgtagccctagctggcc
tccaactcacagatttgcttacctctgcctgatgaggattaaaggcagcc
ctttctgtttcttaaaggtcactttttgagtacccacacctttttctctg
cggtggttgtctttaaggtaccagacagagagggaaaaccaagtgtggga
aagctgaaccatgggtttctctaaagctcaagtgttgccctggtttactg
ataactgaacccactgcaggctacttttagtttatttcatggggtcagag
ttttcagatccagtgtgctgggaccccagtgcccttgggagaacagcagc
tat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_57375569_57376571
seq2: B6Ng01-004E20.g_68_1070 (reverse)

seq1  ATAGCTTGCTGTTCTTCCAAGGGCACTGGGGTTCCCAGCACAACTGGATC  50
      ||||| ||||||||| ||||||||||||||| ||||||||| ||||||||
seq2  ATAGC-TGCTGTTCTCCCAAGGGCACTGGGG-TCCCAGCAC-ACTGGATC  47

seq1  TGAAAACTCTGA-CCCATGAAATAAACTAAAAAGTAGCCTGCAGTGGGTT  99
      |||||||||||| ||||||||||||||| |||||||||||||||||||||
seq2  TGAAAACTCTGACCCCATGAAATAAACT-AAAAGTAGCCTGCAGTGGGTT  96

seq1  CAGTTATCAGTAAACCAGGGC-ACACTTGGGCTTTAGAGAAACCC-TGGT  147
      ||||||||||||||||||||| ||||||| ||||||||||||||| ||||
seq2  CAGTTATCAGTAAACCAGGGCAACACTTGAGCTTTAGAGAAACCCATGGT  146

seq1  TCAGCTTTCCCACACTTGGTTTTCCCTCTCTGTCTGGTACCTTAAAGACA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTTCCCACACTTGGTTTTCCCTCTCTGTCTGGTACCTTAAAGACA  196

seq1  ACCACCGCAGAG-AAAAGGTGTGGGTACTCAAAAAGTGACCTTTAAGAAA  246
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACCACCGCAGAGAAAAAGGTGTGGGTACTCAAAAAGTGACCTTTAAGAAA  246

seq1  CAGAAAGGGCTGCCTTTAATCCTCATCAGGCAGAGGTAAGCAAATCTGTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGGGCTGCCTTTAATCCTCATCAGGCAGAGGTAAGCAAATCTGTG  296

seq1  AGTTGGAGGCCAGCTAGGGCTACAAGGTGAGACCCTGTTTTAAAAAGAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGAGGCCAGCTAGGGCTACAAGGTGAGACCCTGTTTTAAAAAGAAA  346

seq1  GGTAACAGAAAGCAATGACAACATGTACCTAGGAGTAATCTATCCTACCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACAGAAAGCAATGACAACATGTACCTAGGAGTAATCTATCCTACCT  396

seq1  AAGAAAACGGCAAAGGATTGTTAAAAGCTTGGATGTCTCAGCTCCACTTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACGGCAAAGGATTGTTAAAAGCTTGGATGTCTCAGCTCCACTTC  446

seq1  CCATAAAGCCACTGTTCAGCTTTGCAGGTGGCATAGGCAAAGGGGGAGTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAGCCACTGTTCAGCTTTGCAGGTGGCATAGGCAAAGGGGGAGTT  496

seq1  TTGAAAGGGAAGAGAAAACCCGCTTTGAAATAGATGGAATCGTTTCAGTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGGGAAGAGAAAACCCGCTTTGAAATAGATGGAATCGTTTCAGTC  546

seq1  AGATATCACCGTTAAAAAACATGACTTCTGCCAAATCACACCTTCATCCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATCACCGTTAAAAAACATGACTTCTGCCAAATCACACCTTCATCCT  596

seq1  CCTCTAGGATAGATAAAATACAAAAGTCACTAAAACCCTCAAACTGCTAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAGGATAGATAAAATACAAAAGTCACTAAAACCCTCAAACTGCTAC  646

seq1  GTTGGAGGCCAGCCTGGTCAACGGAGCTAGTTCCAAGACAGCCAGGGCTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAGGCCAGCCTGGTCAACGGAGCTAGTTCCAAGACAGCCAGGGCTA  696

seq1  CACACACAGAAACCCTTTCTTGGAAAACAAAACAAAACGCACACACACAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAGAAACCCTTTCTTGGAAAACAAAACAAAACGCACACACACAA  746

seq1  ACAACAAACCCCAAAACTCTCAAACTGATCCCTGTTGATTATAAAGTCCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAACCCCAAAACTCTCAAACTGATCCCTGTTGATTATAAAGTCCT  796

seq1  TTGATTTCTGACTGACAGAGCCTTGAGCTCCCCATAGTCAAGAATGGGAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTCTGACTGACAGAGCCTTGAGCTCCCCATAGTCAAGAATGGGAG  846

seq1  TCTCCTGCCAGTCCCACTTTGAGAAATGGATGGGTTCCAAGAGAATGAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGCCAGTCCCACTTTGAGAAATGGATGGGTTCCAAGAGAATGAAA  896

seq1  TCAGGGTGAACAGCTACCATTTTTCTTAAGGCCGTGTAACAAAGTGTGGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTGAACAGCTACCATTTTTCTTAAGGCCGTGTAACAAAGTGTGGC  946

seq1  ACAGAACACGTACCTTACTCAAAGTTCAAACAAAGCTCTAAAAGGAATCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACACGTACCTTACTCAAAGTTCAAACAAAGCTCTAAAAGGAATCA  996

seq1  AGAATTC  1003
      |||||||
seq2  AGAATTC  1003