BAC Information

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BAC

Clone NameB6Ng01-004F16
Chromosome3 (Build37)
Map Location 104,460,471 - 104,586,910
singlet/doubletdoublet
Overlap geneSlc16a1, EG624251, 7530404M11Rik, Ppm1j
Upstream geneLOC100043538, Olfml3, Hipk1, Dclre1b, Ap4b1, Gm566, Ptpn22, LOC668452, Rsbn1, Phtf1, Magi3, EG433634, LOC668622, Lrig2
Downstream geneRhoc, Mov10, Capza1, St7l, LOC100043572, Wnt2b, Cttnbp2nl, 4930564D02Rik, 1700095B22Rik, Kcnd3, Ddx20, 6530418L21Rik, Rap1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004F16.bB6Ng01-004F16.g
ACCDH841786DH841787
length9531,066
definitionDH841786|Mus musculus domesticus DNA, BAC clone: B6Ng01-004F16, 5' end.DH841787|Mus musculus domesticus DNA, BAC clone: B6Ng01-004F16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,460,471 - 104,461,426)(104,585,830 - 104,586,910)
sequence
gaattcagtgtaggtttccccaaaccttagttacggtatgagaatcttag
gtatgtgtgggtttgaggggctctgaggtgttggttcttaggtttgaacc
cagggccacaagcatgctaagtgcatgctgtaccactgagccacaaccca
caggcaccctggaatccttctccttgacccctgaaaccttttctcttggt
ttttgatagttccatttataccactactagtttagagctgtatgtgggat
gattcagtaccgactgaatggatgtgcttttgttttttttacattgtttt
tcagtatttgcaaaaccacgagggttagagtttggcctcagggaagccaa
taaagataaaatgggaggaagtttgctgagaacttgtatcatgctttacg
attatttgacatagtcttacctccacaccttaactttcatgaccctttca
ctcacctgaaatgtagaaaaatgggttcagtgtaaggataagaggaaaga
tggaccagattggaactacagtgttttgggttttttttttttttaacctg
atgtcttctgaatagaggcagaaaaaaataagacatatgacactgaattg
tactcaatgtgtttaaaataccattgtaattgacagggtgaatatagatt
taaaaccttgtgtaagaagctgactttttccaaataaaacatttatttta
tttttagaaaacagttcttccgcatgtttatttgtgagacatgttatttt
tgtcttcattcttactaatttttattttattttaacctttctaatattga
atcgtccatttatataccttgactcgtacatatggttcatttatattgat
tttcctcctttagttaagacaagcagggaaggattttaagaccgcatctg
agcttagatcccctgatgctgttagccttagacactgtgggaaccacctt
gca
gaattccatgcaggaggaccaggccctccccataatgagcctgatgatgt
cttgcctgggtcctcatctctccgtcccccgtggatatggcaacctttcc
ttatatcttactgatcactgcggtctttaatacttaacccagcacccctt
cactctctgcattcccctcatcctagggaggatgttccccttttacggcc
actctcaaagccctcttcccactcacctgctgtcacctgcgttagccaca
tacatcttgcctagcaggtacagcaccactagtgcacagcagcccccttc
cacttggtggccacgccgctcccgagccatctgctcatcctgccaggtga
ggaagggtcaaaggaaacagaaaaacctgcggcacatagtcacctactcc
accttgcacctctccaggccagagtggaagagaagaggaccacacagggt
aacaggaccaagctccgctcaggctctcaaaggcagtgtggattctaggg
ttcacccacccacctccacctcacagtgttgactagaatgcctacttagc
acattattggcctaggccatccactcaccatgagatggaaggcattctca
atggctcctactatcaggctgtcatgggtcacttccttctgtggagacca
gcaggattgagggctaaccaactgtgaaggactgggggctcctggggttc
caggagtggatgggagacagaggggaggcggcaagggatcctttaagtat
ttctactagatccttgagctgttcccggatgtggcgatgcaggagccggg
aggccatttcagctgctcctccaccagcgtgcccatcaaacaggccccag
tagtaaaagcagaagccctggtgaagaaaaagttggaagtcggtagggat
gagggagacagggcatgttagcagccatataccatcacatgggagatctg
agtgtgatatcaagcatttagatctatccactattcatgcacagctactg
tgtcagagaagaggagcagtcaaacatgagatgcaaagtcagtactgaat
agtttatcatccataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_104460471_104461426
seq2: B6Ng01-004F16.b_49_1001

seq1  GAATTCAGTGTAGGTTTCCCCAAACCTTAGTTACGGTATGAGAATCTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTAGGTTTCCCCAAACCTTAGTTACGGTATGAGAATCTTAG  50

seq1  GTATGTGTGGGTTTGAGGGGCTCTGAGGTGTTGGTTCTTAGGTTTGAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTGGGTTTGAGGGGCTCTGAGGTGTTGGTTCTTAGGTTTGAACC  100

seq1  CAGGGCCACAAGCATGCTAAGTGCATGCTGTACCACTGAGCCACAACCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCACAAGCATGCTAAGTGCATGCTGTACCACTGAGCCACAACCCA  150

seq1  CAGGCACCCTGGAATCCTTCTCCTTGACCCCTGAAACCTTTTCTCTTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACCCTGGAATCCTTCTCCTTGACCCCTGAAACCTTTTCTCTTGGT  200

seq1  TTTTGATAGTTCCATTTATACCACTACTAGTTTAGAGCTGTATGTGGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATAGTTCCATTTATACCACTACTAGTTTAGAGCTGTATGTGGGAT  250

seq1  GATTCAGTACCGACTGAATGGATGTGCTTTTGTTTTTTTTACATTGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGTACCGACTGAATGGATGTGCTTTTGTTTTTTTTACATTGTTTT  300

seq1  TCAGTATTTGCAAAACCACGAGGGTTAGAGTTTGGCCTCAGGGAAGCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATTTGCAAAACCACGAGGGTTAGAGTTTGGCCTCAGGGAAGCCAA  350

seq1  TAAAGATAAAATGGGAGGAAGTTTGCTGAGAACTTGTATCATGCTTTACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATAAAATGGGAGGAAGTTTGCTGAGAACTTGTATCATGCTTTACG  400

seq1  ATTATTTGACATAGTCTTACCTCCACACCTTAACTTTCATGACCCTTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTGACATAGTCTTACCTCCACACCTTAACTTTCATGACCCTTTCA  450

seq1  CTCACCTGAAATGTAGAAAAATGGGTTCAGTGTAAGGATAAGAGGAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTGAAATGTAGAAAAATGGGTTCAGTGTAAGGATAAGAGGAAAGA  500

seq1  TGGACCAGATTGGAACTACAGTGTTTTGGGTTTTTTTTTTTTTTAACCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCAGATTGGAACTACAGTGTTTTGGGTTTTTTTTTTTTTTAACCTG  550

seq1  ATGTCTTCTGAATAGAGGCAGAAAAAAATAAGACATATGACACTGAATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTCTGAATAGAGGCAGAAAAAAATAAGACATATGACACTGAATTG  600

seq1  TACTCAATGTGTTTAAAATACCATTGTAATTGACAGGGTGAATATAGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAATGTGTTTAAAATACCATTGTAATTGACAGGGTGAATATAGATT  650

seq1  TAAAACCTTGTGTAAGAAGCTGACTTTTTCCAAATAAAACATTTATTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCTTGTGTAAGAAGCTGACTTTTTCCAAATAAAACATTTATTTTA  700

seq1  TTTTTAGAAAACAGTTCTTCCGCATGTTTATTTGTGAGACATGTTATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGAAAACAGTTCTTCCGCATGTTTATTTGTGAGACATGTTATTTT  750

seq1  TGTCTTCATTCTTACTAATTTTTATTTTATTTTAACCTTTCTAATATTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCATTCTTACTAATTTTTATTTTATTTTAACCTTTCTAATATTGA  800

seq1  ATCGTCCATTTATATACCTTGACTCGTACATATGGTTCATTTTATGTTGA  850
      ||||||||||||||||||||||||||||||||||||||| ||||| ||||
seq2  ATCGTCCATTTATATACCTTGACTCGTACATATGGTTCA-TTTATATTGA  849

seq1  TTTTCCTCCTTTAGTTAAGACAAGCAGGGAAGGATTTTAAGACCGCATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTTCCTCCTTTAGTTAAGACAAGCAGGGAAGGATTTTAAGACCGCATC-  898

seq1  TGAGCTGAGATCCCCTGATGCTGTTAGCCTTAAGACACTGTGGGAACCAC  950
      |||||| |||||||||||||||||||||||| ||||||||||||||||||
seq2  TGAGCTTAGATCCCCTGATGCTGTTAGCCTT-AGACACTGTGGGAACCAC  947

seq1  CTTGCA  956
      ||||||
seq2  CTTGCA  953

seq1: chr3_104585830_104586910
seq2: B6Ng01-004F16.g_66_1131 (reverse)

seq1  TTATGGATGATTAAACTAATCAGTACTGACCTTTGCATTCTTCATGTTTT  50
      |||||||||| ||||||| |||||||||| ||||||||   |||||||| 
seq2  TTATGGATGA-TAAACTATTCAGTACTGA-CTTTGCAT--CTCATGTTT-  45

seq1  GAACTTGGCTCCTCTTTCTCTTGACACAGTAGGCTGTGCATGAATAAGTG  100
        |||  ||||||| ||||| |||||||||| ||||||||||||| ||||
seq2  -GACT--GCTCCTC-TTCTC-TGACACAGTA-GCTGTGCATGAAT-AGTG  88

seq1  AATAGATCTAAATTGCCTTGATATCACACTCAGATCTCCCATGTGATGGT  150
       ||||||||||||   ||||||||||||||||||||||||||||||||| 
seq2  GATAGATCTAAAT--GCTTGATATCACACTCAGATCTCCCATGTGATGG-  135

seq1  TATATGGCTGCTAACCTGCCCTGTCTCCCTCCATCCCTACCGACTTCCAA  200
      ||||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  TATATGGCTGCTAACATGCCCTGTCTCCCT-CATCCCTACCGACTTCCAA  184

seq1  CTTTTTCTTCACCAGGGCTTCTGCTTTTACTACTGGGGCCTGTTTGATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTTCACCAGGGCTTCTGCTTTTACTACTGGGGCCTGTTTGATGG  234

seq1  GCACGCTGGTGGAGGAGCAGCTGAAATGGCCTCCCGGCTCCTGCATCGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGCTGGTGGAGGAGCAGCTGAAATGGCCTCCCGGCTCCTGCATCGCC  284

seq1  ACATCCGGGAACAGCTCAAGGATCTAGTAGAAATACTT-AAGGATCCCTT  349
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACATCCGGGAACAGCTCAAGGATCTAGTAGAAATACTTAAAGGATCCCTT  334

seq1  GCCGCCTCCCCTCTGTCTCCCATCCACTCCTGGAACCCCAGGAGCCCCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCCTCCCCTCTGTCTCCCATCCACTCCTGGAACCCCAGGAGCCCCCA  384

seq1  GTCCTTCACAGTTGGTTAGCCCTCAATCCTGCTGGTCTCCACAGAAGGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCACAGTTGGTTAGCCCTCAATCCTGCTGGTCTCCACAGAAGGAA  434

seq1  GTGACCCATGACAGCCTGATAGTAGGAGCCATTGAGAATGCCTTCCATCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCATGACAGCCTGATAGTAGGAGCCATTGAGAATGCCTTCCATCT  484

seq1  CATGGTGAGTGGATGGCCTAGGCCAATAATGTGCTAAGTAGGCATTCTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGAGTGGATGGCCTAGGCCAATAATGTGCTAAGTAGGCATTCTAG  534

seq1  TCAACACTGTGAGGTGGAGGTGGGTGGGTGAACCCTAGAATCCACACTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACTGTGAGGTGGAGGTGGGTGGGTGAACCCTAGAATCCACACTGC  584

seq1  CTTTGAGAGCCTGAGCGGAGCTTGGTCCTGTTACCCTGTGTGGTCCTCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGAGCCTGAGCGGAGCTTGGTCCTGTTACCCTGTGTGGTCCTCTT  634

seq1  CTCTTCCACTCTGGCCTGGAGAGGTGCAAGGTGGAGTAGGTGACTATGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCACTCTGGCCTGGAGAGGTGCAAGGTGGAGTAGGTGACTATGTG  684

seq1  CCGCAGGTTTTTCTGTTTCCTTTGACCCTTCCTCACCTGGCAGGATGAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAGGTTTTTCTGTTTCCTTTGACCCTTCCTCACCTGGCAGGATGAGC  734

seq1  AGATGGCTCGGGAGCGGCGTGGCCACCAAGTGGAAGGGGGCTGCTGTGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCTCGGGAGCGGCGTGGCCACCAAGTGGAAGGGGGCTGCTGTGCA  784

seq1  CTAGTGGTGCTGTACCTGCTAGGCAAGATGTATGTGGCTAACGCAGGTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGGTGCTGTACCTGCTAGGCAAGATGTATGTGGCTAACGCAGGTGA  834

seq1  CAGCAGGTGAGTGGGAAGAGGGCTTTGAGAGTGGCCGTAAAAGGGGAACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGTGAGTGGGAAGAGGGCTTTGAGAGTGGCCGTAAAAGGGGAACA  884

seq1  TCCTCCCTAGGATGAGGGGAATGCAGAGAGTGAAGGGGTGCTGGGTTAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCTAGGATGAGGGGAATGCAGAGAGTGAAGGGGTGCTGGGTTAAG  934

seq1  TATTAAAGACCGCAGTGATCAGTAAGATATAAGGAAAGGTTGCCATATCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAGACCGCAGTGATCAGTAAGATATAAGGAAAGGTTGCCATATCC  984

seq1  ACGGGGGACGGAGAGATGAGGACCCAGGCAAGACATCATCAGGCTCATTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGGGACGGAGAGATGAGGACCCAGGCAAGACATCATCAGGCTCATTA  1034

seq1  TGGGGAGGGCCTGGTCCTCCTGCATGGAATTC  1081
      ||||||||||||||||||||||||||||||||
seq2  TGGGGAGGGCCTGGTCCTCCTGCATGGAATTC  1066