BAC Information

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BAC

Clone NameB6Ng01-004H17
Chromosome3 (Build37)
Map Location 83,024,058 - 83,025,064
singlet/doubletsinglet
Overlap genenone
Upstream geneMtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094
Downstream geneDchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004H17.bB6Ng01-004H17.g
ACCDH841880DH841881
length1,2281,008
definitionDH841880|Mus musculus domesticus DNA, BAC clone: B6Ng01-004H17, 5' end.DH841881|Mus musculus domesticus DNA, BAC clone: B6Ng01-004H17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
tttctggagtccaccttcttgagttctttatatatatatattgaatatta
gtcacctatctgatttaggatacgtaaagatcctttcccaatctgttggt
ggcctttttgtcttattgacggtgtcttttgccttgcagaagctttgcag
tttcatgaggtcccatttgtcaattctcgatcttacagcacaagccattg
ctgttctattcaggaatttttcccctgtgcccatctcttcgaggcttttc
cccactttctcctctctaagtttcagtgtctctggttttatgtggagttc
cttgatccacttagatttgaccttagtacaaggagataggaatggatcga
ttcgcattcttctacacgataacaagcagttgtgccagcaccatttgttg
aaaatgctgtctttcttccactggatggttttagctcccttatcgaagat
caagtgaccataggtgtttgggttcatttctgggtcttcaattctattcc
attgggctacttttctgtcgttataccagtaccatgccgtttttaatcac
aattgctctgtagtaaagctttaggtcaggcatggtgattccaccagagg
ttcttttatccttgagaagagtttttgctatcctaggttttttgttattc
cagatgaatttgcagattgctctttctaattcgttgaagaattgagttgg
aattttgatggggattgcattgaatctgtagattgcttttggcaagatag
ccatttttacaatgttgatcctgccaatccatgagcatggcagatctttc
catcttctgagatcttctttaatttctttcttcagagacttgaagttctt
atcatacagatctttcacttcctttagttagagtcacgccaagatatttt
tatattattttgtgactattcagaagggtgttgtttccctaatttctgct
catcctgtttattcttgtgtagaagaaagtcgttgactgttgagttaaat
ttaatatccagctactcacaagctgtttaatcaggataggagttcctctg
gtggatttttgggtcacttaatatacctatctatcactcggaaaagtgaa
atatttggctcatctttcaaactggatgcctgaccttcagatcatagtgg
tgaataagggtgggtgacccatgtgatg
gaattcacaccaataggtgttagttatggtttaatatgggaaaaaaaatc
agagctaacagacttgctaggcaaatatgactacttggctctcaattttg
tatgcttcagcccatggtggatttggaacattacttttggacatgtggca
aagatggtatgatgtgggagggtgacacatcgcctcagccaggaaacaga
gtaagagaagaagccaggatcccaatgtcctcctcaagagtgcgtttcca
aggatctcacatccttctatgagcaacaaactcctaaagttccaacccct
cccagcagtatgacagttcatcttaaatgtccaacatgcatgagcctttg
aagaacccttatgcaagctataacacaacctcacaaggtaaggaaatgga
agatagaatgtttctctacataatgctaacatgcaaagggcaccgagaca
gtgaaaataaactaaatcataactagtgaccttcatgaacagatacaaga
gtctgcatcacaatattaagaaattaacccaatgaaacaaaattgaaacc
aactggagtcttaatacaatgtatgtaacctttaaggctaatggagaggg
tgggagatggcttagtggattcagtgtttgctgctgaatctcacaactgt
gagaactggagttccaatcctctgagtggaagtgaggttgaaaggcatga
gttcaaataatgagcctcttattctctagcattctatgtggttaggagag
cacagactagaacctgggagggatgggagagaccctcacagtagcgatgt
tgtatagaggagcatgcaattataagatcaacacagccttggagtgaaga
aaggattttgtagcttaagaaatacaaagctttgagaaaggaggaaagat
tacctaagaaggttttgaaaggtgttttattttgaaaaataaaaccctcg
ttacttctctgttgccttcagggggatttggcttcctctaaatggccatc
atgaagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_83024058_83025064
seq2: B6Ng01-004H17.g_66_1073

seq1  GAATTCACACCAATAGGTGTTAGTTATGGTTTAATATGGGAAAAAAAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACCAATAGGTGTTAGTTATGGTTTAATATGGGAAAAAAAATC  50

seq1  AGAGCTAACAGACTTGCTAGGCAAATATGACTACTTGGCTCTCAATTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTAACAGACTTGCTAGGCAAATATGACTACTTGGCTCTCAATTTTG  100

seq1  TATGCTTCAGCCCATGGTGGATTTGGAACATTACTTTTGGACATGTGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTCAGCCCATGGTGGATTTGGAACATTACTTTTGGACATGTGGCA  150

seq1  AAGATGGTATGATGTGGGAGGGTGACACATCGCCTCAGCCAGGAAACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGTATGATGTGGGAGGGTGACACATCGCCTCAGCCAGGAAACAGA  200

seq1  GTAAGAGAAGAAGCCAGGATCCCAATGTCCTCCTCAAGAGTGCGTTTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAGAAGAAGCCAGGATCCCAATGTCCTCCTCAAGAGTGCGTTTCCA  250

seq1  AGGATCTCACATCCTTCTATGAGCAACAAACTCCTAAAGTTCCAACCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTCACATCCTTCTATGAGCAACAAACTCCTAAAGTTCCAACCCCT  300

seq1  CCCAGCAGTATGACAGTTCATCTTAAATGTCCAACATGCATGAGCCTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAGTATGACAGTTCATCTTAAATGTCCAACATGCATGAGCCTTTG  350

seq1  AAGAACCCTTATGCAAGCTATAACACAACCTCACAAGGTAAGGAAATGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCCTTATGCAAGCTATAACACAACCTCACAAGGTAAGGAAATGGA  400

seq1  AGATAGAATGTTTCTCTACATAATGCTAACATGCAAAGGGCACCGAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGAATGTTTCTCTACATAATGCTAACATGCAAAGGGCACCGAGACA  450

seq1  GTGAAAATAAACTAAATCATAACTAGTGACCTTCATGAACAGATACAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAATAAACTAAATCATAACTAGTGACCTTCATGAACAGATACAAGA  500

seq1  GTCTGCATCACAATATTAAGAAATTAACCCAATGAAACAAAATTGAAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCATCACAATATTAAGAAATTAACCCAATGAAACAAAATTGAAACC  550

seq1  AACTGGAGTCTTAATACAATGTATGTAACCTTTAAGGCTAATGGAGAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAGTCTTAATACAATGTATGTAACCTTTAAGGCTAATGGAGAGGG  600

seq1  TGGGAGATGGCTTAGTGGATTCAGTGTTTGCTGCTGAATCTCACAACTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGATGGCTTAGTGGATTCAGTGTTTGCTGCTGAATCTCACAACTGT  650

seq1  GAGAACTGGAGTTCCAATCCTCTGAGTGGAAGTGAGGTTGAAAGGCATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTGGAGTTCCAATCCTCTGAGTGGAAGTGAGGTTGAAAGGCATGA  700

seq1  GTTCAAATAATGAGCCTCTTATTCTCTAGCATTCTATGTGGTTAGGAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAATAATGAGCCTCTTATTCTCTAGCATTCTATGTGGTTAGGAGAG  750

seq1  CACAGACTAGAACCTGGGAGGGATGGGAGAGACCCTCACAGTAGCGATG-  799
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CACAGACTAGAACCTGGGAGGGATGGGAGAGACCCTCACAGTAGCGATGT  800

seq1  TGTATAGAGGAGCAGGCAA-TATAAGATCAACACAGCCTTGGAGTGAAGA  848
      |||||||||||||| |||| ||||||||||||||||||||||||||||||
seq2  TGTATAGAGGAGCATGCAATTATAAGATCAACACAGCCTTGGAGTGAAGA  850

seq1  AAGGATTTTGTAGCTATAGAAATACAAAGCTTTGAGAAAGGAGGAAAGA-  897
      |||||||||||||||  |||||||||||||||||||||||||||||||| 
seq2  AAGGATTTTGTAGCTTAAGAAATACAAAGCTTTGAGAAAGGAGGAAAGAT  900

seq1  TACCTAAGAAGGATTTTGAAGGTGTTTTATTTTGAAGAAATAGAACCCTC  947
      |||||||||||| |||  |||||||||||||||||| ||||| |||||||
seq2  TACCTAAGAAGGTTTTGAAAGGTGTTTTATTTTGAA-AAATAAAACCCTC  949

seq1  GTTACTTCT-TGTTGCCTTCAGGGTGGATTTGTGTTTCCTCTAAAATGCC  996
      ||||||||| |||||||||||||| ||||||| | ||||||||||  |||
seq2  GTTACTTCTCTGTTGCCTTCAGGG-GGATTTG-GCTTCCTCTAAATGGCC  997

seq1  ATCATGAAGTG  1007
      |||||||||||
seq2  ATCATGAAGTG  1008