BAC Information

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BAC

Clone NameB6Ng01-004K08
Chromosome3 (Build37)
Map Location 51,611,250 - 51,742,970
singlet/doubletdoublet
Overlap geneMaml3
Upstream geneCcrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684, Mgst2
Downstream geneLOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1, LOC100039762, LOC100039832
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004K08.bB6Ng01-004K08.g
ACCDH841998DH841999
length434706
definitionDH841998|Mus musculus domesticus DNA, BAC clone: B6Ng01-004K08, 5' end.DH841999|Mus musculus domesticus DNA, BAC clone: B6Ng01-004K08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,742,531 - 51,742,970)(51,611,250 - 51,611,955)
sequence
caacatcctcttccctctgcctcccaagtacttggaataacatgcacacg
ccactaggccctgttttgctcttttctgtctaatccacctccactcactt
taatgtggcccagagctcaggctctgtgctgtcttgctgcacgctgctca
aaagctcagttcatggttcttggcatagtcgacaaggagattcagcgccc
ccttgcctcaaggaccaaagtgggctctgagataacgcagctagatttca
ggtttagtctaccgtcctgttgacaggactgggcatctatctgtgtgtgg
gggtgaggctcagggggagtcaggagtgtgagtgtatgtagtggtgtgta
tacatttgtggaggtcaagagaacaaccttgattctaggtccttgcctgc
caccttgtttgagacaggctctcttcttcattgt
gaattcttttgtttttgttctttttgagactggacctcgctgtgtatcca
ggactggcctcgaacttgctatgtggatcaagatagcctcgagttcacag
agatctgcctgcctctgcctcccgagtcagactgccatgtcagactcctg
taaactctcttatgtctgcttagtgtccaaagaagccagaagaggggcca
gatccctctgcaactggagttacagacagttatgatctatcatgtaggtg
ctgggaattgaaccagggtcctctggaagaccagccaatgctaagtcatt
tctccgaaacctgatgtaaattcttgagtagcaacttggatccaggtaaa
gttaaagttaatataaaggttttcgctaagagctgaaggtaaagagagat
ggctccctgcccactgcatcaatggctacacagatgcaacaagacgaagg
ggctaaagaattcttgaaaactgcctttactagaggatggggctgagaat
ctgacactcattaataggaatccccatacttcctcagattcagcaaccac
gagtgagctcatgatttgccgtaccgcccctcatccttgtccaacagatc
aatttatttttttcatggaatattcttttgttggcctgtcttttgctcct
cccccaacgagcaactgagttcggagcggatatgcagtgtgagcgtgcgt
gtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_51742531_51742970
seq2: B6Ng01-004K08.b_48_487 (reverse)

seq1  ACAATGAAGAAGAGAGCCTGTCTCAAACAAGGTGGCAGGCAAGGACCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAAGAAGAGAGCCTGTCTCAAACAAGGTGGCAGGCAAGGACCTAG  50

seq1  ACTCAAGGTTGTTCTCTTGACCTCCACAAATGTATACACACCACTACATA  100
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGGTTGTTCTCTTGACCTCCACAAATGTATACACACCACTACATA  100

seq1  CACTCACACTCCTGACTCCCCCTGAGCCTCACCCCCACACACAGATAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACACTCCTGACTCCCCCTGAGCCTCACCCCCACACACAGATAGAT  150

seq1  GCCCAGTCCTGTCAACAGGACGGTAGACTAAACCTGAAATCTAGCTGCGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTCCTGTCAACAGGACGGTAGACTAAACCTGAAATCTAGCTGCGT  200

seq1  TATCTCAGAGCCCACTTTGGTCCTTGAGGCAAGGGGGCGCTGAATCTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCAGAGCCCACTTTGGTCCTTGAGGCAAGGGGGCGCTGAATCTCCT  250

seq1  TGTCGACTATGCCAAGAACCATGAACTGAGCTTTTGAGCAGCGTGCAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGACTATGCCAAGAACCATGAACTGAGCTTTTGAGCAGCGTGCAGCA  300

seq1  AGACAGCACAGAGCCTGAGCTCTGGGCCACATTAAAGTGAGTGGAGGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCACAGAGCCTGAGCTCTGGGCCACATTAAAGTGAGTGGAGGTGG  350

seq1  ATTAGACAGAAAAGAGCAAAACAGGGCCTAGTGGCGTGTGCATGTTATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGACAGAAAAGAGCAAAACAGGGCCTAGTGGCGTGTGCATGTTATTC  400

seq1  CAAGTACTTGGGAGGCAGAGGGAAGAGGATGTTGGAATTC  440
      ||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTACTTGGGAGGCAGAGGGAAGAGGATGTTGGAATTC  440

seq1: chr3_51611250_51611955
seq2: B6Ng01-004K08.g_66_771

seq1  GAATTCTTTTGTTTTTGTTCTTTTTGAGACTGGACCTCGCTGTGTATCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGTTTTTGTTCTTTTTGAGACTGGACCTCGCTGTGTATCCA  50

seq1  GGACTGGCCTCGAACTTGCTATGTGGATCAAGATAGCCTCGAGTTCACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGGCCTCGAACTTGCTATGTGGATCAAGATAGCCTCGAGTTCACAG  100

seq1  AGATCTGCCTGCCTCTGCCTCCCGAGTCAGACTGCCATGTCAGACTCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGCCTGCCTCTGCCTCCCGAGTCAGACTGCCATGTCAGACTCCTG  150

seq1  TAAACTCTCTTATGTCTGCTTAGTGTCCAAAGAAGCCAGAAGAGGGGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCTCTTATGTCTGCTTAGTGTCCAAAGAAGCCAGAAGAGGGGCCA  200

seq1  GATCCCTCTGCAACTGGAGTTACAGACAGTTATGATCTATCATGTAGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCTCTGCAACTGGAGTTACAGACAGTTATGATCTATCATGTAGGTG  250

seq1  CTGGGAATTGAACCAGGGTCCTCTGGAAGACCAGCCAATGCTAAGTCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAATTGAACCAGGGTCCTCTGGAAGACCAGCCAATGCTAAGTCATT  300

seq1  TCTCCGAAACCTGATGTAAATTCTTGAGTAGCAACTTGGATCCAGGTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCGAAACCTGATGTAAATTCTTGAGTAGCAACTTGGATCCAGGTAAA  350

seq1  GTTAAAGTTAATATAAAGGTTTTCGCTAAGAGCTGAAGGTAAAGAGAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGTTAATATAAAGGTTTTCGCTAAGAGCTGAAGGTAAAGAGAGAT  400

seq1  GGCTCCCTGCCCACTGCATCAATGGCTACACAGATGCAACAAGACGAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCTGCCCACTGCATCAATGGCTACACAGATGCAACAAGACGAAGG  450

seq1  GGCTAAAGAATTCTTGAAAACTGCCTTTACTAGAGGATGGGGCTGAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAAGAATTCTTGAAAACTGCCTTTACTAGAGGATGGGGCTGAGAAT  500

seq1  CTGACACTCATTAATAGGAATCCCCATACTTCCTCAGATTCAGCAACCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACTCATTAATAGGAATCCCCATACTTCCTCAGATTCAGCAACCAC  550

seq1  GAGTGAGCTCATGATTTGCCGTACCGCCCCTCATCCTTGTCCAACAGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGCTCATGATTTGCCGTACCGCCCCTCATCCTTGTCCAACAGATC  600

seq1  AATTTATTTTTTTCATGGAATATTCTTTTGTTGGCCTGTCTTTTGCTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATTTTTTTCATGGAATATTCTTTTGTTGGCCTGTCTTTTGCTCCT  650

seq1  CCCCCAACGAGCAACTGAGTTCGGAGCGGATATGCAGTGTGAGCGTGCGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAACGAGCAACTGAGTTCGGAGCGGATATGCAGTGTGAGCGTGCGT  700

seq1  GTGTGT  706
      ||||||
seq2  GTGTGT  706