BAC Information

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BAC

Clone NameB6Ng01-004O14
Chromosome3 (Build37)
Map Location 60,615,567 - 60,722,694
singlet/doubletdoublet
Overlap geneLOC100040501, EG666853
Upstream geneLOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823, LOC100040485, Mbnl1, LOC676933
Downstream geneP2ry1, Rap2b, LOC666891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004O14.bB6Ng01-004O14.g
ACCDH842195DH842196
length1,1191,201
definitionDH842195|Mus musculus domesticus DNA, BAC clone: B6Ng01-004O14, 5' end.DH842196|Mus musculus domesticus DNA, BAC clone: B6Ng01-004O14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,721,566 - 60,722,694)(60,615,567 - 60,616,784)
sequence
gaattcttatttatatgtgcctctatacacctgtattgtatagagaggct
aatatcacctctaaaacagtcaacatcataactatacctttacaagacat
tcttttttactcagcctggccaaacataagcattctccattccttctctg
actttgacaggaatttatgaagatcttcatcactggacgatttcctgaat
attatcaagaatcatatctatccttttgaggttggctgattttcactcaa
tataatttccttgagctttctgcaacccattatatgcatcaatagttcat
ttctttttattgatgaatagtattctgtggaagagttatagcatggtcaa
ttcaatcatgcatctatttatagaatactttattttgcagttttgttctc
tgaattatgtcatttctctctatatagtcatatatatatatatatatata
tggtgtgaaaatatgatttcatttctcagtgatatatgggtgccctaggg
aacaattgctggtttatttgctaactccaagtctatttttcataaaaact
gcccaactattttacaaaggaactctgcttctgtggattccaatgaacaa
ttttgaagtatttaatttccattacgaaaatattttatcattggaataga
catacagtcagtcataatgtaggcaatagagtttgtaaggtaaacttaaa
gaaaaaaatgaccattacaagggagagaaaattccaaaactatacagaca
tccctttttcaaaggcccaacaattagctgatctacatatcaatgggagt
tcaggaaaaaattccacaaacagtagaggaaaaagtacagagacaaaaca
cagtctttaggaaacagacacgtagataacctaacacaatgagacttgtg
actcagtttctaaaatatcctggttcactattgaggaaaaatattttatt
ttttgctctatctaacagataagacaaattcccagtgattcacattgctt
ccaacaccatatgcagaaaaaaggtcaggaaattatagcataaaaaacta
ttttgatacaattatgtgatttatcatattctgagaaacggacgagactg
tagtatgcagaaaagcatg
gaattcactgtaagagcttaattagacacacaggctaaagccaaagctgg
gaattattacatgtggtaaacagggttaaagaggaactttgaagcaagat
tttctaagagatattaattaacaatgcagaattatttaggctattgtaga
atttttttaatttaggctcaggtatctgatgccttccaaacaggtatcaa
gaaacaaattaaattattaggaaccaacctgtcataaatcagacagattc
aaggtttctctgaattaatttataatgctaatttctcaccatttatatct
cattgccataactgccacattgccaataaaatgatgcaaaccctcaagac
ctgcaaacagtcaacagcctcagagacaggagggaagcctctggtggatg
actaattagccagttccacttatctcagctttgacatttcaggaaagtcc
gccattctggcatttggaactggggaattccggtgtaaccagagtcacgt
gagacccggattctttgagcacagctgtgaaaccagaacaaaatgctgtg
acattaacatgcgaattacagggaaaagagtttccccattaacttcctgg
gtcatcattgaaagtttagacaggcagatatctgatggcaatttaactgt
gcatgtgtttgtaggatagcattagtgtgaaaaggaattcacccccaacc
tggatgttcgaccctggacagccccagtgggcaactgtttcagagtatga
tgtgttttgtcagcatcccccaatgcatccttccagtcagaatgcatttt
agtgaccaaaagctacagaggaagaaagctcagacattttaccctctgca
ccccaatggctgcatccactgtcaaggtctccctaaatactagtttctct
gttccatcctgctccctgccctttcctccccaaaatgttatttccagtga
acttttagaagtccattaaagtgactttttttgtagaaatggaccttcag
caaaggtaaagtgcatttgagagctatcctgtgctgtcgtctaaaaagca
ctcacatgcattatgattgattgtcagcaaaacaggcaaaattttcatta
ccaaatgtacaagagtctcattgatggccttattctctagaatctttatc
catgcagtcaatcagcaccatggccacctttcttgcttttgaggtggcac
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_60721566_60722694
seq2: B6Ng01-004O14.b_47_1165 (reverse)

seq1  CATGCTTTTCTGCATACCTTACAGTCCTCGTTCTGTTCTCAG-ATATGAT  49
      |||||||||||||||||  |||||| ||||| |  ||||||| |||||||
seq2  CATGCTTTTCTGCATAC--TACAGT-CTCGTCCGTTTCTCAGAATATGAT  47

seq1  AAATCACATAATTTGTATCAAAATAGTTTTATATTGCTATAAATTTCCTT  99
      ||||||||||| |||||||||||||||||| || |||||| ||||||| |
seq2  AAATCACATAA-TTGTATCAAAATAGTTTTTTA-TGCTAT-AATTTCC-T  93

seq1  GACCTTTTTTTCTGCATATGGTTGTTTGGAAGCAATGTGATTCACTGGGA  149
      |||| |||||||||||||||||   ||||||||||||||| |||||||||
seq2  GACC-TTTTTTCTGCATATGGT--GTTGGAAGCAATGTGAATCACTGGGA  140

seq1  ATTTGTTCTTATCTTGTTAGATAGAGCAAAAAATAAAATTATTTTTCCTC  199
      ||||| ||||||| |||||||||||||||||||||||| |||||||||||
seq2  ATTTG-TCTTATC-TGTTAGATAGAGCAAAAAATAAAA-TATTTTTCCTC  187

seq1  AATAGTGAACCAGGATATTTTAGAAACTGAGTCAC-AGTCTCATTGTGTT  248
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AATAGTGAACCAGGATATTTTAGAAACTGAGTCACAAGTCTCATTGTGTT  237

seq1  AGGTTATCTACGTGTCTGTTTCCT-AAGACTGTGTTTTGTCTCTGTACTT  297
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGGTTATCTACGTGTCTGTTTCCTAAAGACTGTGTTTTGTCTCTGTACTT  287

seq1  TTTCCTCTACTGTTTGTGGAATTTTTTCCTGAACTCCCATTGATATGTAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTACTGTTTGTGGAATTTTTTCCTGAACTCCCATTGATATGTAG  337

seq1  ATCAGCTAATTGTTGGGCCTTTGAAAAAGGGATGTCTGTATAGTTTTGGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTAATTGTTGGGCCTTTGAAAAAGGGATGTCTGTATAGTTTTGGA  387

seq1  ATTTTCTCTCCCTTGTAATGGTCATTTTTTTCTTTAAGTTTACCTTACAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCTCCCTTGTAATGGTCATTTTTTTCTTTAAGTTTACCTTACAA  437

seq1  ACTCTATTGCCTACATTATGACTGACTGTATGTCTATTCCAATGATAAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATTGCCTACATTATGACTGACTGTATGTCTATTCCAATGATAAAA  487

seq1  TATTTTCGTAATGGAAATTAAATACTTCAAAATTGTTCATTGGAATCCAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCGTAATGGAAATTAAATACTTCAAAATTGTTCATTGGAATCCAC  537

seq1  AGAAGCAGAGTTCCTTTGTAAAATAGTTGGGCAGTTTTTATGAAAAATAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGAGTTCCTTTGTAAAATAGTTGGGCAGTTTTTATGAAAAATAG  587

seq1  ACTTGGAGTTAGCAAATAAACCAGCAATTGTTCCCTAGGGCACCCATATA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAGTTAGCAAATAAACCAGCAATTGTTCCCTAGGGCACCCATATA  637

seq1  TCACTGAGAAATGAAATCATATTTTCACACCATATATATATATATATATA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAGAAATGAAATCATATTTTCACACCATATATATATATATATATA  687

seq1  TATGACTATATAGAGAGAAATGACATAATTCAGAGAACAAAACTGCAAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTATATAGAGAGAAATGACATAATTCAGAGAACAAAACTGCAAAA  737

seq1  TAAAGTATTCTATAAATAGATGCATGATTGAATTGACCATGCTATAACTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTATTCTATAAATAGATGCATGATTGAATTGACCATGCTATAACTC  787

seq1  TTCCACAGAATACTATTCATCAATAAAAAGAAATGAACTATTGATGCATA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAGAATACTATTCATCAATAAAAAGAAATGAACTATTGATGCATA  837

seq1  TAATGGGTTGCAGAAAGCTCAAGGAAATTATATTGAGTGAAAATCAGCCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGGTTGCAGAAAGCTCAAGGAAATTATATTGAGTGAAAATCAGCCA  887

seq1  ACCTCAAAAGGATAGATATGATTCTTGATAATATTCAGGAAATCGTCCAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAAAAGGATAGATATGATTCTTGATAATATTCAGGAAATCGTCCAG  937

seq1  TGATGAAGATCTTCATAAATTCCTGTCAAAGTCAGAGAAGGAATGGAGAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAAGATCTTCATAAATTCCTGTCAAAGTCAGAGAAGGAATGGAGAA  987

seq1  TGCTTATGTTTGGCCAGGCTGAGTAAAAAAGAATGTCTTGTAAAGGTATA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATGTTTGGCCAGGCTGAGTAAAAAAGAATGTCTTGTAAAGGTATA  1037

seq1  GTTATGATGTTGACTGTTTTAGAGGTGATATTAGCCTCTCTATACAATAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGATGTTGACTGTTTTAGAGGTGATATTAGCCTCTCTATACAATAC  1087

seq1  AGGTGTATAGAGGCACATATAAATAAGAATTC  1129
      ||||||||||||||||||||||||||||||||
seq2  AGGTGTATAGAGGCACATATAAATAAGAATTC  1119

seq1: chr3_60615567_60616784
seq2: B6Ng01-004O14.g_67_1267

seq1  GAATTCACTGTAAGAGCTTAATTAGACACACAGGCTAAAGCCAAAGCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTAAGAGCTTAATTAGACACACAGGCTAAAGCCAAAGCTGG  50

seq1  GAATTATTACATGTGGTAAACAGGGTTAAAGAGGAACTTTGAAGCAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATTACATGTGGTAAACAGGGTTAAAGAGGAACTTTGAAGCAAGAT  100

seq1  TTTCTAAGAGATATTAATTAACAATGCAGAATTATTTAGGCTATTGTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAGAGATATTAATTAACAATGCAGAATTATTTAGGCTATTGTAGA  150

seq1  ATTTTTTTAATTTAGGCTCAGGTATCTGATGCCTTCCAAACAGGTATCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTAATTTAGGCTCAGGTATCTGATGCCTTCCAAACAGGTATCAA  200

seq1  GAAACAAATTAAATTATTAGGAACCAACCTGTCATAAATCAGACAGATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAATTAAATTATTAGGAACCAACCTGTCATAAATCAGACAGATTC  250

seq1  AAGGTTTCTCTGAATTAATTTATAATGCTAATTTCTCACCATTTATATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTCTCTGAATTAATTTATAATGCTAATTTCTCACCATTTATATCT  300

seq1  CATTGCCATAACTGCCACATTGCCAATAAAATGATGCAAACCCTCAAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCCATAACTGCCACATTGCCAATAAAATGATGCAAACCCTCAAGAC  350

seq1  CTGCAAACAGTCAACAGCCTCAGAGACAGGAGGGAAGCCTCTGGTGGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAACAGTCAACAGCCTCAGAGACAGGAGGGAAGCCTCTGGTGGATG  400

seq1  ACTAATTAGCCAGTTCCACTTATCTCAGCTTTGACATTTCAGGAAAGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTAGCCAGTTCCACTTATCTCAGCTTTGACATTTCAGGAAAGTCC  450

seq1  GCCATTCTGGCATTTGGAACTGGGGAATTCCGGTGTAACCAGAGTCACGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTCTGGCATTTGGAACTGGGGAATTCCGGTGTAACCAGAGTCACGT  500

seq1  GAGACCCGGATTCTTTGAGCACAGCTGTGAAACCAGAACAAAATGCTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCGGATTCTTTGAGCACAGCTGTGAAACCAGAACAAAATGCTGTG  550

seq1  ACATTAACATGCGAATTACAGGGAAAAGAGTTTCCCCATTAACTTCCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAACATGCGAATTACAGGGAAAAGAGTTTCCCCATTAACTTCCTGG  600

seq1  GTCATCATTGAAAGTTTAGACAGGCAGATATCTGATGGCAATTTAACTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCATTGAAAGTTTAGACAGGCAGATATCTGATGGCAATTTAACTGT  650

seq1  GCATGTGTTTGTAGGATAGCATTAGTGTGAAAAGGAATTCACCCCCAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGTTTGTAGGATAGCATTAGTGTGAAAAGGAATTCACCCCCAACC  700

seq1  TGGATGTTCGACCCTGGACAGCCCCAGTGGGCAACTGTTTCAGAGTATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTTCGACCCTGGACAGCCCCAGTGGGCAACTGTTTCAGAGTATGA  750

seq1  TGTGTTTTGTCAGCATCCCCCAATGCATCCTTCCAGTCAGAATGCA-TTT  799
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGTGTTTTGTCAGCATCCCCCAATGCATCCTTCCAGTCAGAATGCATTTT  800

seq1  AGTGACCAAAAGCTACAGAGGAAGAAAGCTCAGACATTTTACCCTCTGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACCAAAAGCTACAGAGGAAGAAAGCTCAGACATTTTACCCTCTGCA  850

seq1  CCCCAATGGCTGCATCCACTGTCAAGGTCTCCCTAAATACTAGTTTCTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAATGGCTGCATCCACTGTCAAGGTCTCCCTAAATACTAGTTTCTCT  900

seq1  GTTCCATCCTGCTCCCTGCCCTTTCCTCCCCAAAATGTTAATTTCCAGTG  949
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTTCCATCCTGCTCCCTGCCCTTTCCTCCCCAAAATGTT-ATTTCCAGTG  949

seq1  AACTTTCAG-AGTCCATTACAGTGAC-TATTTTGTAGAAATGGACCTTCA  997
      |||||| || ||||||||| |||||| | |||||||||||||||||||||
seq2  AACTTTTAGAAGTCCATTAAAGTGACTTTTTTTGTAGAAATGGACCTTCA  999

seq1  GCCAAAGGTAAAGTGGCATTTTGAGAGCTATCCTGTGCTGTCGTCCTAAA  1047
      | |||||||||||| ||| ||||||||||||||||||||||||| |||||
seq2  G-CAAAGGTAAAGT-GCA-TTTGAGAGCTATCCTGTGCTGTCGT-CTAAA  1045

seq1  AAGCACTCACATGCAATTATGAATTGATTTGTCAGCAAAAACAGGCAGAT  1097
      |||||||||||||| |||||| ||||| |||||||| |||||||||  | 
seq2  AAGCACTCACATGC-ATTATG-ATTGA-TTGTCAGC-AAAACAGGC--AA  1089

seq1  ATTTTTCATTA-CAAATGTACCAAGAGTCTCATGTAGATTGCTTAATGCT  1146
      | ||||||||| |||||||| |||||||||||  | ||| || | || ||
seq2  AATTTTCATTACCAAATGTA-CAAGAGTCTCA--TTGATGGCCTTATTCT  1136

seq1  TCCTAG-ATCTTTATTCACAATGCACAGTCAAATTCAGCACCATGGCCAC  1195
        |||| ||||||||   | |||  |||||||  ||||||||||||||||
seq2  --CTAGAATCTTTAT---CCATG--CAGTCAA--TCAGCACCATGGCCAC  1177

seq1  CTTTCTT-CCTTTGTGGTGGCACC  1218
      ||||||| | |||| |||||||||
seq2  CTTTCTTGCTTTTGAGGTGGCACC  1201