BAC Information

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BAC

Clone NameB6Ng01-005D18
Chromosome3 (Build37)
Map Location 133,335,373 - 133,400,599
singlet/doubletdoublet
Overlap genenone
Upstream geneScye1, A630047E20Rik, LOC668858, Npnt, Gstcd, Ints12, 9130221D24Rik, Ppa2, E130014J05Rik
Downstream geneEG620205, LOC100039168, LOC668862, LOC100039199, Cxxc4, Ppia-ps3_1390.1, LOC100039234
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005D18.bB6Ng01-005D18.g
ACCDH842425DH842426
length1,1481,121
definitionDH842425|Mus musculus domesticus DNA, BAC clone: B6Ng01-005D18, 5' end.DH842426|Mus musculus domesticus DNA, BAC clone: B6Ng01-005D18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,399,437 - 133,400,599)(133,335,373 - 133,336,481)
sequence
gaattcagagaaataagtggcatatgactggtcactgtcattccttcctt
atgtctttctgtattttataagctatccttaaagagtatgtattattttt
aaatttaatttaatattatttgttaataataaagtatggtcattataata
acataaacttattgtctatgaatctgtttttgtcacaaactactggctta
aatatactaacactttcaggataaaaaaaagtaccatatagaaattgttc
tcagtacatttgaagaaatgaaaaagtatcactcactgtatgcagagaaa
gataaatagaaactccccagaacgaatactgccaaggagccaccagccca
atatgtcgacatcgcctcatctgctacacacaaaactgagacaaggaagt
atattcattaaatgtctttctattcattaaatcattactcctatttgaat
tatttctaaagacttcttcccaaagcatctacactaataacaactatcac
ctttctcctcttaccttggttcacaattaaagatccgtctcaccaaaaat
ttttctaagtattaaatttaaaagaaaaaaaacccaacttttatatttta
tcattttgtctaaattgcttacacaaaagtctgagtaagtgctgtataag
tttaaaatttttctacttttgtaccatataacattcacatattatatatg
tatatgatgtttatgtatacacatacacacacacacacacacacacacat
acacacacacactttggggttttatttctgaaagaacctgtattacatga
actcccataggtaaatttctttggtttcttatatttacctgtctctggct
acaggtccccagccatgggaaccaagatataaataaagtgcatcttttct
gttcatctgtaatgcaggtgtactgtacaccaagctatagaaacccccac
tctcttgtatctcatttgtgaacctgaccagatctaacaaagaacattag
acatcaattgtctgcagacgataggattagacatgaaattgaaagcatgt
gctacatagttcaactgctgattttgtactgcatgaagcacttcagctta
agcattcacttactcagaaagaaggacaacgagctgtatcagctgctt
gaattccacattgtcttttcctggttagaattacccagaggaggcattca
tattgtctcctctatactgaattctaagggtttaaatgcttataaatata
tttataggattgaaatataaaattaaataaaatttaagtatatatcagat
ttaaatatatgtatgaagactgtttttaagtttgcagatgatccatggat
gaagatgaagtatttgtcttattacacgcttcatgccattgtagtatcat
acaattcagacgcattaaaaatacttagtcatacttccagggtttctgcc
aaacttctgttggttgtaatgtagtatttaatttgtcttgaatttctttc
ttgtgtgaactggtggtggtgatagtaagaatgtacccattccaactttt
attttacaccatttgaaaagaagtcctgtcatacctcaaaggagccacta
gagtgtatactcattggtcccattatattctataatctgttcttcactga
gctaatgaagacacacagtggagacagctgcttgttggcttgccactgaa
ttctctcatgtgtaacacagggcccagcaagtatcaaacatgaacgattt
aaatccctggattaatgcactgactgaacatttttatttgtggcatgttc
agattttgtctagagcaaaaatctctccaatattctggatagaaagatgt
tggcccctcgccataggagagctgtagatgagggctggaagcttcccttt
tcagcagatctgaaaagggagggcggcagggtagccactgcttatgaacc
ctggctgtaggagcactgcagagagttgttctcaggccggtgtctgtggc
cactggaaactttttgctgatgattctcagagcccgcttattagcagtga
ttcctgggagatgtgtcggcagccaggcagttgcggcaactatgatctca
tttgccttgccaacagctgctcccgagaataagtgactttttcttccaaa
gtttatgaatgtctcatttgcacattcttattctgattgatatggaaaca
ggtttcctgggaaatggagttctttatgtaataactgtggagcatatata
acagttgaaatgaataagctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_133399437_133400599
seq2: B6Ng01-005D18.b_48_1195 (reverse)

seq1  AAGCAGGGCTGATACAGGCTCTGGTTGTCTGTCTTTCTGGGAAGGTTAGT  50
      |||||  ||||||||||   || ||||||  ||||||||     || |||
seq2  AAGCA--GCTGATACAG---CTCGTTGTCCTTCTTTCTG----AGTAAGT  41

seq1  GAATGCCTAAAGCTGAAGTGCTTCATGCAGTACAAAATCCAGCAGTTGAA  100
      ||||| || ||||||||||||||||||||||||||||| |||||||||||
seq2  GAATG-CTTAAGCTGAAGTGCTTCATGCAGTACAAAAT-CAGCAGTTGAA  89

seq1  CTATTGTTAGCACATGGCTTTCAAATTTCATGTTCTAATCTTATCCTTCT  150
      ||||   |||||||| |||||| ||||||||| ||||||| ||| | |||
seq2  CTAT--GTAGCACAT-GCTTTC-AATTTCATG-TCTAATCCTAT-CGTCT  133

seq1  GCAGAC-ATTGGTGTCT-ATGTTCTTTGTTAGATCTGGTCAGGTTCACAA  198
      |||||| |||| ||||| ||||||||||||||||||||||||||||||||
seq2  GCAGACAATTGATGTCTAATGTTCTTTGTTAGATCTGGTCAGGTTCACAA  183

seq1  ATGAGATACAAGAGAGT-GGGGTTTCTATAGCTTGGTGTACAGTACACCT  247
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATGAGATACAAGAGAGTGGGGGTTTCTATAGCTTGGTGTACAGTACACCT  233

seq1  GCATTACAGATGAACAGAAAAGATGCACTTTATTTTATATCTTGGTTCCC  297
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCATTACAGATGAACAGAAAAGATGCACTTTA-TTTATATCTTGGTTCCC  282

seq1  ATGGCTGGGGACCTGTAGCCAGAGACAGGTAAATATAAGAAACCAAAGAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGGGGACCTGTAGCCAGAGACAGGTAAATATAAGAAACCAAAGAA  332

seq1  ATTTACCTATGGGAGTTCATGTAATACAGGTTCTTTCAGAAATAAAACCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCTATGGGAGTTCATGTAATACAGGTTCTTTCAGAAATAAAACCC  382

seq1  CAAAGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTATGTGTAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTATGTGTAT  432

seq1  ACATAAACATCATATACATATATAATATGTGAATGTTATATGGTACAAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAACATCATATACATATATAATATGTGAATGTTATATGGTACAAAA  482

seq1  GTAGAAAAATTTTAAACTTATACAGCACTTACTCAGACTTTTGTGTAAGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAAATTTTAAACTTATACAGCACTTACTCAGACTTTTGTGTAAGC  532

seq1  AATTTAGACAAAATGATAAAATATAAAAGTTGGGTTTTTTTTCTTTTAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGACAAAATGATAAAATATAAAAGTTGGGTTTTTTTTCTTTTAAA  582

seq1  TTTAATACTTAGAAAAATTTTTGGTGAGACGGATCTTTAATTGTGAACCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATACTTAGAAAAATTTTTGGTGAGACGGATCTTTAATTGTGAACCA  632

seq1  AGGTAAGAGGAGAAAGGTGATAGTTGTTATTAGTGTAGATGCTTTGGGAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGAGGAGAAAGGTGATAGTTGTTATTAGTGTAGATGCTTTGGGAA  682

seq1  GAAGTCTTTAGAAATAATTCAAATAGGAGTAATGATTTAATGAATAGAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTTTAGAAATAATTCAAATAGGAGTAATGATTTAATGAATAGAAA  732

seq1  GACATTTAATGAATATACTTCCTTGTCTCAGTTTTGTGTGTAGCAGATGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTAATGAATATACTTCCTTGTCTCAGTTTTGTGTGTAGCAGATGA  782

seq1  GGCGATGTCGACATATTGGGCTGGTGGCTCCTTGGCAGTATTCGTTCTGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGATGTCGACATATTGGGCTGGTGGCTCCTTGGCAGTATTCGTTCTGG  832

seq1  GGAGTTTCTATTTATCTTTCTCTGCATACAGTGAGTGATACTTTTTCATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTCTATTTATCTTTCTCTGCATACAGTGAGTGATACTTTTTCATT  882

seq1  TCTTCAAATGTACTGAGAACAATTTCTATATGGTACTTTTTTTTATCCTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAATGTACTGAGAACAATTTCTATATGGTACTTTTTTTTATCCTG  932

seq1  AAAGTGTTAGTATATTTAAGCCAGTAGTTTGTGACAAAAACAGATTCATA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTTAGTATATTTAAGCCAGTAGTTTGTGACAAAAACAGATTCATA  982

seq1  GACAATAAGTTTATGTTATTATAATGACCATACTTTATTATTAACAAATA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATAAGTTTATGTTATTATAATGACCATACTTTATTATTAACAAATA  1032

seq1  ATATTAAATTAAATTTAAAAATAATACATACTCTTTAAGGATAGCTTATA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAATTAAATTTAAAAATAATACATACTCTTTAAGGATAGCTTATA  1082

seq1  AAATACAGAAAGACATAAGGAAGGAATGACAGTGACCAGTCATATGCCAC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAGAAAGACATAAGGAAGGAATGACAGTGACCAGTCATATGCCAC  1132

seq1  TTATTTCTCTGAATTC  1163
      ||||||||||||||||
seq2  TTATTTCTCTGAATTC  1148

seq1: chr3_133335373_133336481
seq2: B6Ng01-005D18.g_68_1188

seq1  GAATTCCACATTGTCTTTTCCTGGTTAGAATTACCCAGAGGAGGCATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATTGTCTTTTCCTGGTTAGAATTACCCAGAGGAGGCATTCA  50

seq1  TATTGTCTCCTCTATACTGAATTCTAAGGGTTTAAATGCTTATAAATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCTCCTCTATACTGAATTCTAAGGGTTTAAATGCTTATAAATATA  100

seq1  TTTATAGGATTGAAATATAAAATTAAATAAAATTTAAGTATATATCAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGGATTGAAATATAAAATTAAATAAAATTTAAGTATATATCAGAT  150

seq1  TTAAATATATGTATGAAGACTGTTTTTAAGTTTGCAGATGATCCATGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATATGTATGAAGACTGTTTTTAAGTTTGCAGATGATCCATGGAT  200

seq1  GAAGATGAAGTATTTGTCTTATTACACGCTTCATGCCATTGTAGTATCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGAAGTATTTGTCTTATTACACGCTTCATGCCATTGTAGTATCAT  250

seq1  ACAATTCAGACGCATTAAAAATACTTAGTCATACTTCCAGGGTTTCTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCAGACGCATTAAAAATACTTAGTCATACTTCCAGGGTTTCTGCC  300

seq1  AAACTTCTGTTGGTTGTAATGTAGTATTTAATTTGTCTTGAATTTCTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCTGTTGGTTGTAATGTAGTATTTAATTTGTCTTGAATTTCTTTC  350

seq1  TTGTGTGAACTGGTGGTGGTGATAGTAAGAATGTACCCATTCCAACTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGAACTGGTGGTGGTGATAGTAAGAATGTACCCATTCCAACTTTT  400

seq1  ATTTTACACCATTTGAAAAGAAGTCCTGTCATACCTCAAAGGAGCCACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACACCATTTGAAAAGAAGTCCTGTCATACCTCAAAGGAGCCACTA  450

seq1  GAGTGTATACTCATTGGTCCCATTATATTCTATAATCTGTTCTTCACTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTATACTCATTGGTCCCATTATATTCTATAATCTGTTCTTCACTGA  500

seq1  GCTAATGAAGACACACAGTGGAGACAGCTGCTTGTTGGCTTGCCACTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATGAAGACACACAGTGGAGACAGCTGCTTGTTGGCTTGCCACTGAA  550

seq1  TTCTCTCATGTGTAACACAGGGCCCAGCAAGTATCAAACATGAACGATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCATGTGTAACACAGGGCCCAGCAAGTATCAAACATGAACGATTT  600

seq1  AAATCCCTGGATTAATGCACTGACTGAACATTTTTA-TTGTGGCATGTTC  649
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAATCCCTGGATTAATGCACTGACTGAACATTTTTATTTGTGGCATGTTC  650

seq1  AGATTTTGTCTAGAGCAAAAATCTCTCCAATATTCTGGATAGAAAGATGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTGTCTAGAGCAAAAATCTCTCCAATATTCTGGATAGAAAGATGT  700

seq1  TGGCCCCTCGCCATAGGAGAGCTGTAGATGAGGGCTGGAAGCTTCCC-TT  748
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGGCCCCTCGCCATAGGAGAGCTGTAGATGAGGGCTGGAAGCTTCCCTTT  750

seq1  TCAGCAGATCTGAAAAGGGAGGGCGGCAGGGTAGCCACTGCTTATGAA-C  797
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCAGCAGATCTGAAAAGGGAGGGCGGCAGGGTAGCCACTGCTTATGAACC  800

seq1  CTGGCTGTAGGAGCACTGCAGAGAGTTGTTCTCAGGCCGGTGTCTGTGGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGTAGGAGCACTGCAGAGAGTTGTTCTCAGGCCGGTGTCTGTGGC  850

seq1  CACTGGAAAC-TTTTGCTGATGA-TCTCAGAGCCCGCTTA-TAGCAGGTG  894
      |||||||||| |||||||||||| |||||||||||||||| ||||| |||
seq2  CACTGGAAACTTTTTGCTGATGATTCTCAGAGCCCGCTTATTAGCA-GTG  899

seq1  ATTCCTGGGAGATGTGTCGGCAGCCAGGCAG-TGCGGCCAACGATGATCT  943
      ||||||||||||||||||||||||||||||| ||||| |||| |||||||
seq2  ATTCCTGGGAGATGTGTCGGCAGCCAGGCAGTTGCGG-CAACTATGATCT  948

seq1  CATTCGCC-TGCCAACAGCTGCT-CCGAGAA-AAGTGAC-TTCTCTTCCA  989
      |||| ||| |||||||||||||| ||||||| ||||||| || |||||||
seq2  CATTTGCCTTGCCAACAGCTGCTCCCGAGAATAAGTGACTTTTTCTTCCA  998

seq1  AATGTTATGAATGTCTCATTGGCACAATCTATTTTTGAATGATATGGAAA  1039
      ||  |||||||||||||||| ||||| |||  || ||| |||||||||||
seq2  AAGTTTATGAATGTCTCATTTGCACATTCTTATTCTGATTGATATGGAAA  1048

seq1  CAGGTTT-CTGGGAAATGGAGTTCTTTAGTGTAGATAACTGT-GAGCATA  1087
      ||||||| |||||||||||||||||||| |||| |||||||| |||||||
seq2  CAGGTTTCCTGGGAAATGGAGTTCTTTA-TGTA-ATAACTGTGGAGCATA  1096

seq1  -ATAACAGTTG--ATAGATAAGCTG  1109
       ||||||||||  ||  ||||||||
seq2  TATAACAGTTGAAATGAATAAGCTG  1121