BAC Information

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BAC

Clone NameB6Ng01-005E09
Chromosome3 (Build37)
Map Location 103,053,090 - 103,164,462
singlet/doubletdoublet
Overlap geneTrim33
Upstream geneEG433633, Ngfb, Tspan2, Tshb, Sycp1, LOC668425, LOC100043517, Nr1h5, 5730470L24Rik, Csde1, Nras, Ampd1, Dennd2c, Bcas2
Downstream geneSyt6, Atg4a-ps, LOC100043538, Olfml3, Hipk1, Dclre1b, Ap4b1, Gm566, Ptpn22, LOC668452, Rsbn1, Phtf1, Magi3, EG433634
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005E09.bB6Ng01-005E09.g
ACCDH842454DH842455
length1,095614
definitionDH842454|Mus musculus domesticus DNA, BAC clone: B6Ng01-005E09, 5' end.DH842455|Mus musculus domesticus DNA, BAC clone: B6Ng01-005E09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,163,363 - 103,164,462)(103,053,090 - 103,053,702)
sequence
gaattcagctatcagtagaagtgggatccagcacccatgcagacagtccc
agctacaagggaggcagaggagagaggattacttgctcgtagagttttga
gtctagcttaagagttcaaaaccgaagaaactcaaagttcactccctgca
cttgactgttgtatctacaatagtctcatcgtccttttacactgactttt
gttctttttaaagatcataggtcttataaatgtacccatattgctgtttt
attatctcacatagttagactcacgccaaatgctacatcaacagtatgat
agaactttgaggatatttacacttaatttaaatgttttaaaaataaatta
taaaattcctaagtattactgtctttccagtacactgacatctttacaaa
tgagaaaaagccacacacgcaccttaaacagtaatgtatttatcactatc
tgtggctatgtaatacaaaagggggaaattaagagacaaaaatttccatt
acttttcatctttgtattctcttaaaccccaaaactttattaaggtagtt
aggtttaagtctatagatcaacaaaattaattaaaaagttatcaatttgt
aagagctgagacagatttaaaatgtctagtgtgaaaggtcttttttcatc
actaaaaaggaaatattttttctttttcaaaataatgtttttgagacagg
gtcctactacgtggcccaggtgggtctcacactaaaacaactctccagcc
tctacctttcacgtattggaattagtataaaaaagtaattttttagctgg
gcatggtggtgtatacctttaatcctagcacttgagaggtggcggctctc
tgaattcaagggcggcttggcctataaagtgagttcacagccaagctaca
cagagaaaccctgtcttttaaaacaaaaacaaacaaacaacaaagaaaca
aagatttatttattttctatgagtacactgttgctgtcttccacacacca
gaagaggacatcggatcccactacagatggctgtgagccaccacgtggtg
ctgggattggactccggactctctgggaaaaacagtcactgctct
gaattcagtggtctctgtactctgttccattgtgagttccctaagtggaa
tgagtagacagttgttcacgtctccccaggaatttagaaaactaagcaaa
gtagagaggggactaatggatagtaagagaggacacagggctgtgtatgt
tcaaagcactttatattcatgcttgaaaatgccataatgagggctggaga
gatggctcagtggataaaagcactgactgctcttccgaaggtcctgagtt
caaatcccagcaaccacatggtggctcacaaccacctgtaacgagatctg
acaccctcttctggtctgaagtcagctacagtgtatttatatataataat
aaatctgaaagaaagaaagaaagaaagaaagaaagaaagaaggaaggaaa
aggaaatgccataatgaaaccgggcctgggagctggcctgctgctagcct
gaagactcaggtttaattcccatgactcccaaggtgaacggagagtagca
atctctctagctgctttgtaatctccacacagagagacatgctcgggact
atatacatgtgcatgcaaaatatgtaatatagtgaaacattttattttga
gatgtcttaacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_103163363_103164462
seq2: B6Ng01-005E09.b_47_1141 (reverse)

seq1  AGAGCAGTGACTGCTCTT-CCAGAG-GTCCGGAGTTCAAATCCCAGCAAC  48
      ||||||||||||| | || |||||| |||||||| || ||||||||| ||
seq2  AGAGCAGTGACTGTTTTTCCCAGAGAGTCCGGAG-TCCAATCCCAGC-AC  48

seq1  CACGTGGTGGCTCACAGCCATCTGTAGTGGGATCCGATGTCCTCTTCTGG  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGGTGGCTCACAGCCATCTGTAGTGGGATCCGATGTCCTCTTCTGG  98

seq1  TGTGTGTGAAGACAGCAACAGTGTACTCATAGAAAATAAATAAATCTTTG  148
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTG-GAAGACAGCAACAGTGTACTCATAGAAAATAAATAAATCTTTG  147

seq1  TTTCTTTTGTTTGTTTGTTTGTTTTTGTTTTAAAAGACAGGGTTTCTCTG  198
      |||||||   ||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTT--GTTGTTTGTTTGTTTTTGTTTTAAAAGACAGGGTTTCTCTG  195

seq1  TGTAGCCTTGGCTGTGGAACTCACTTTATAGGCCAAGCCGGCCTTGAATT  248
      ||||| ||||||||| |||||||||||||||||||||||| |||||||||
seq2  TGTAG-CTTGGCTGT-GAACTCACTTTATAGGCCAAGCCGCCCTTGAATT  243

seq1  CAGAGAGCCGCCACCTCTCAAGTGCTAGGATTAAAGGTATACACCACCAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGCCGCCACCTCTCAAGTGCTAGGATTAAAGGTATACACCACCAT  293

seq1  GCCCAGCTAAAAAATTACTTTTTTATACTAATTCCAATACCTGAAAGGTA  348
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCCCAGCTAAAAAATTACTTTTTTATACTAATTCCAATACGTGAAAGGTA  343

seq1  GAGGCTGGAGAGTTGTTTTAGTGTGAGACCCACCTGGGCCACGTAGTAGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGGAGAGTTGTTTTAGTGTGAGACCCACCTGGGCCACGTAGTAGG  393

seq1  ACCCTGTCTCAAAAACATTATTTTGAAAAAGAAAAAATATTTCCTTTTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTCTCAAAAACATTATTTTGAAAAAGAAAAAATATTTCCTTTTTA  443

seq1  GTGATGAAAAAAGACCTTTCACACTAGACATTTTAAATCTGTCTCAGCTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAAAAAAGACCTTTCACACTAGACATTTTAAATCTGTCTCAGCTC  493

seq1  TTACAAATTGATAACTTTTTAATTAATTTTGTTGATCTATAGACTTAAAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAATTGATAACTTTTTAATTAATTTTGTTGATCTATAGACTTAAAC  543

seq1  CTAACTACCTTAATAAAGTTTTGGGGTTTAAGAGAATACAAAGATGAAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTACCTTAATAAAGTTTTGGGGTTTAAGAGAATACAAAGATGAAAA  593

seq1  GTAATGGAAATTTTTGTCTCTTAATTTCCCCCTTTTGTATTACATAGCCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGGAAATTTTTGTCTCTTAATTTCCCCCTTTTGTATTACATAGCCA  643

seq1  CAGATAGTGATAAATACATTACTGTTTAAGGTGCGTGTGTGGCTTTTTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGTGATAAATACATTACTGTTTAAGGTGCGTGTGTGGCTTTTTCT  693

seq1  CATTTGTAAAGATGTCAGTGTACTGGAAAGACAGTAATACTTAGGAATTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTAAAGATGTCAGTGTACTGGAAAGACAGTAATACTTAGGAATTT  743

seq1  TATAATTTATTTTTAAAACATTTAAATTAAGTGTAAATATCCTCAAAGTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTATTTTTAAAACATTTAAATTAAGTGTAAATATCCTCAAAGTT  793

seq1  CTATCATACTGTTGATGTAGCATTTGGCGTGAGTCTAACTATGTGAGATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATACTGTTGATGTAGCATTTGGCGTGAGTCTAACTATGTGAGATA  843

seq1  ATAAAACAGCAATATGGGTACATTTATAAGACCTATGATCTTTAAAAAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACAGCAATATGGGTACATTTATAAGACCTATGATCTTTAAAAAGA  893

seq1  ACAAAAGTCAGTGTAAAAGGACGATGAGACTATTGTAGATACAACAGTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGTCAGTGTAAAAGGACGATGAGACTATTGTAGATACAACAGTCA  943

seq1  AGTGCAGGGAGTGAACTTTGAGTTTCTTCGGTTTTGAACTCTTAAGCTAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGGGAGTGAACTTTGAGTTTCTTCGGTTTTGAACTCTTAAGCTAG  993

seq1  ACTCAAAACTCTACGAGCAAGTAATCCTCTCTCCTCTGCCTCCCTTGTAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAAACTCTACGAGCAAGTAATCCTCTCTCCTCTGCCTCCCTTGTAG  1043

seq1  CTGGGACTGTCTGCATGGGTGCTGGATCCCACTTCTACTGATAGCTGAAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACTGTCTGCATGGGTGCTGGATCCCACTTCTACTGATAGCTGAAT  1093

seq1  TC  1100
      ||
seq2  TC  1095

seq1: chr3_103053090_103053702
seq2: B6Ng01-005E09.g_70_683

seq1  GAATTCAGTGGTCTCTGTACTCTGTTCCATTGTGAGTTCCCTAAGTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGTCTCTGTACTCTGTTCCATTGTGAGTTCCCTAAGTGGAA  50

seq1  TGAGTAGACAGTTGTTCACGTCTCCCCAGGAATTTAGAAAACTAAGCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAGACAGTTGTTCACGTCTCCCCAGGAATTTAGAAAACTAAGCAAA  100

seq1  GTAGAGAGGGGACTAATGGATAGTAAGAGAGGACACAGGGCTGTGTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGAGGGGACTAATGGATAGTAAGAGAGGACACAGGGCTGTGTATGT  150

seq1  TCAAAGCACTTTATATTCATGCTTGAAAATGCCATAATGAGGGCTGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCACTTTATATTCATGCTTGAAAATGCCATAATGAGGGCTGGAGA  200

seq1  GATGGCTCAGTGGATAAAAGCACTGACTGCTCTTCCGAAGGTCCTGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTCAGTGGATAAAAGCACTGACTGCTCTTCCGAAGGTCCTGAGTT  250

seq1  CAAATCCCAGCAACCACATGGTGGCTCACAACCACCTGTAACGAGATCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCCAGCAACCACATGGTGGCTCACAACCACCTGTAACGAGATCTG  300

seq1  ACACCCTCTTCTGGTCTGAAGTCAGCTACAGTGTATTTATATATAATAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTCTTCTGGTCTGAAGTCAGCTACAGTGTATTTATATATAATAAT  350

seq1  AAATCTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGGAAGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGGAAGGAAA  400

seq1  AGGAAATGCCATAATGAAACCGGGCCTGGGAGCTGGCCTGCTGCTAGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGCCATAATGAAACCGGGCCTGGGAGCTGGCCTGCTGCTAGCCT  450

seq1  GAAGACTCAGGTTTAATTCCCATGACTCCCAAGGTGAACGGAGAGTAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTCAGGTTTAATTCCCATGACTCCCAAGGTGAACGGAGAGTAGCA  500

seq1  ATCTCACTAGCTGCTTTGTAATCTCCACACAGAGAGACATGCACGGGACT  550
      ||||| |||||||||||||||||||||||||||||||||||| |||||||
seq2  ATCTCTCTAGCTGCTTTGTAATCTCCACACAGAGAGACATGCTCGGGACT  550

seq1  ATATACATGTGCATGCAAAATAAGTAATATAGTGAAACA-TTTATTTTGA  599
      |||||||||||||||||||||| |||||||||||||||| ||||||||||
seq2  ATATACATGTGCATGCAAAATATGTAATATAGTGAAACATTTTATTTTGA  600

seq1  GATGTCTTAACAAA  613
      ||||||||||||||
seq2  GATGTCTTAACAAA  614