BAC Information

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BAC

Clone NameB6Ng01-005E12
Chromosome3 (Build37)
Map Location 95,762,097 - 95,907,716
singlet/doubletdoublet
Overlap geneLOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908
Upstream geneRfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e
Downstream geneOtud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005E12.bB6Ng01-005E12.g
ACCDH842458DH842459
length730820
definitionDH842458|Mus musculus domesticus DNA, BAC clone: B6Ng01-005E12, 5' end.DH842459|Mus musculus domesticus DNA, BAC clone: B6Ng01-005E12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,762,097 - 95,762,826)(95,906,895 - 95,907,716)
sequence
gaattctctttgttacagaaggtctgtctgtctgtcattctcccctcaga
agcccatcacactatccagacgtctgtttttcctaatggccctctgtttg
aacctcaggcttgctctctcccttcagactcaggtcatggctgcctctga
tgtgacatctaacattcctgatagagcatatttggtctcagcctcctgtc
tatgagcctgtaaccacttttaatatttataacacaagtgttgccatttt
ccaggggggggggacacatttacttaaatggctataaagctgaatactga
aatttgtttgctacaatatttgatttctctttttgactcatattctagta
ttgatattgaaaattcacacacaggtgaaagtggacaagctgctgacatc
tgatttttattttttaattgagcatttgtagatttatttattttgtttct
atgagtgttttgcctgcaagtatgcatgttcccagtgcccgtcggaggtc
agagggcactggggccttcagaactgcactatggacagcaggaggttgtg
aggaccatgtgggtgggaggggctgaactcaggtcctccagcagtgcaat
gttttagttactgtgaaaagacaccatgaccagggcaacttacaaaggaa
agcgtttcatttgggggctcacaattctagagagctggagtccatggcca
tcgtggcagggtggggtggagaggatggga
gaattcactgaaatattttatataaagcaaaacaaacatatatgtcacgg
aggttacaatgagctgtgcctaggagcacacaaacaagccatctcagcct
ttcatgtttgtaaaggaatatggactgcttccagaagaactactttattg
aaaacacaaaaatgggcccagcttatgctatactctaaccaaatgaatcc
taaaatttaactcagatctctagaatccacacattcaaggcagtgtttat
tatcaaaattatgttcactgggtttatgtaaaagcataatgcagttggct
cttcattttcctcagtattcgctgagaattttggtttctaatggggaagg
atagagcacagaattatccagactaggaactgacacctgaaacaggaaac
ccactggaaaaatacccttaagtttagagttgaaagtttagggctgaacc
taaggccacgtatacatgtctcagccaagcaaagtagctggtgcctttgg
aagataccacaacttacaatgcaacttagcaagccagagcttagaagatc
cagggagtaccgattgcaactactattttgtgacaaatttgagaagaggg
taggattttggtctcactgaattccgtagatcatactagcccctgctggc
taagtctgatgtgggaaggcagaactctgcaaaactgagagctgctttca
cactcatcgattaactatgtttaacacactttcacacactccttagacca
gtatggagctcaaaggctctctccaccttaagtacaagcagaggggttgg
ttttgttgttgttgttgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95762097_95762826
seq2: B6Ng01-005E12.b_46_775

seq1  GAATTCTCTTTGTTACAGAAGGTCTGTCTGTCTGTCATTCTCCCCTCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTGTTACAGAAGGTCTGTCTGTCTGTCATTCTCCCCTCAGA  50

seq1  AGCCCATCACACTATCCAGACGTCTGTTTTTCCTAATGGCCCTCTGTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATCACACTATCCAGACGTCTGTTTTTCCTAATGGCCCTCTGTTTG  100

seq1  AACCTCAGGCTTGCTCTCTCCCTTCAGACTCAGGTCATGGCTGCCTCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCAGGCTTGCTCTCTCCCTTCAGACTCAGGTCATGGCTGCCTCTGA  150

seq1  TGTGACATCTAACATTCCTGATAGAGCATATTTGGTCTCAGCCTCCTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACATCTAACATTCCTGATAGAGCATATTTGGTCTCAGCCTCCTGTC  200

seq1  TATGAGCCTGTAACCACTTTTAATATTTATAACACAAGTGTTGCCATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGCCTGTAACCACTTTTAATATTTATAACACAAGTGTTGCCATTTT  250

seq1  CCAGGGGGGGGGGACACATTTACTTAAATGGCTATAAAGCTGAATACTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGGGGGGGACACATTTACTTAAATGGCTATAAAGCTGAATACTGA  300

seq1  AATTTGTTTGCTACAATATTTGATTTCTCTTTTTGACTCATATTCTAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTTTGCTACAATATTTGATTTCTCTTTTTGACTCATATTCTAGTA  350

seq1  TTGATATTGAAAATTCACACACAGGTGAAAGTGGACAAGCTGCTGACATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATTGAAAATTCACACACAGGTGAAAGTGGACAAGCTGCTGACATC  400

seq1  TGATTTTTATTTTTTAATTGAGCATTTGTAGATTTATTTATTTTGTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTATTTTTTAATTGAGCATTTGTAGATTTATTTATTTTGTTTCT  450

seq1  ATGAGTGTTTTGCCTGCAAGTATGCATGTTCCCAGTGCCCGTCGGAGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGTTTTGCCTGCAAGTATGCATGTTCCCAGTGCCCGTCGGAGGTC  500

seq1  AGAGGGCACTGGGGCCTTCAGAACTGCACTATGGACAGCAGGAGGTTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCACTGGGGCCTTCAGAACTGCACTATGGACAGCAGGAGGTTGTG  550

seq1  AGGACCATGTGGGTGGGAGGGGCTGAACTCAGGTCCTCCAGCAGTGCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCATGTGGGTGGGAGGGGCTGAACTCAGGTCCTCCAGCAGTGCAAT  600

seq1  GTTTTAGTTACTGTGAAAAGACACCATGACCAGGGCAACTTACAAAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGTTACTGTGAAAAGACACCATGACCAGGGCAACTTACAAAGGAA  650

seq1  AGCGTTTCATTTGGGGGCTCACAATTCTAGAGAGCTGGAGTCCATGGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTTTCATTTGGGGGCTCACAATTCTAGAGAGCTGGAGTCCATGGCCA  700

seq1  TCGTGGCAGGGTGGGGTGGAGAGGATGGGA  730
      ||||||||||||||||||||||||||||||
seq2  TCGTGGCAGGGTGGGGTGGAGAGGATGGGA  730

seq1: chr3_95906895_95907716
seq2: B6Ng01-005E12.g_71_890 (reverse)

seq1  AAACAACAACAACAACAAAACCAACCCCTCTGCCTTGTACTTAAGGTGGA  50
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAACAACAACAACAACAAAACCAACCCCTCTG-CTTGTACTTAAGGTGGA  49

seq1  GAGAGCCTTTGAGCTCCATACCTGGTCCTAAGGAGTGTGTGAAAGTGTGT  100
      |||||||||||||||||||| ||||| |||||||||||||||||||||||
seq2  GAGAGCCTTTGAGCTCCATA-CTGGT-CTAAGGAGTGTGTGAAAGTGTGT  97

seq1  TAAACATAGTTAATCGATGAGTGTGAAAGCAGCTCTCAGTTTTGCAGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATAGTTAATCGATGAGTGTGAAAGCAGCTCTCAGTTTTGCAGAGT  147

seq1  TCTGCCTTCCCACATCAGACTTAGCCAGCAGGGGCTAGTATGATCTACGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTCCCACATCAGACTTAGCCAGCAGGGGCTAGTATGATCTACGG  197

seq1  AATTCAGTGAGACC-AAATCCTACCCTCTTCTCAAATTTGTCACAAAATA  249
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AATTCAGTGAGACCAAAATCCTACCCTCTTCTCAAATTTGTCACAAAATA  247

seq1  GTAGTTGCAATCGGTACTCCCTGGATCTTCTAAGCTCTGGCTTGCTAAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTGCAATCGGTACTCCCTGGATCTTCTAAGCTCTGGCTTGCTAAGT  297

seq1  TGCATTGTAAGTTGTGGTATCTTCCAAAGGCACCAGCTACTTTGCTTGGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGTAAGTTGTGGTATCTTCCAAAGGCACCAGCTACTTTGCTTGGC  347

seq1  TGAGACATGTATACGTGGCCTTAGGTTCAGCCCTAAACTTTCAACTCTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACATGTATACGTGGCCTTAGGTTCAGCCCTAAACTTTCAACTCTAA  397

seq1  ACTTAAGGGTATTTTTCCAGTGGGTTTCCTGTTTCAGGTGTCAGTTCCTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGGGTATTTTTCCAGTGGGTTTCCTGTTTCAGGTGTCAGTTCCTA  447

seq1  GTCTGGATAATTCTGTGCTCTATCCTTCCCCATTAGAAACCAAAATTCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGATAATTCTGTGCTCTATCCTTCCCCATTAGAAACCAAAATTCTC  497

seq1  AGCGAATACTGAGGAAAATGAAGAGCCAACTGCATTATGCTTTTACATAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAATACTGAGGAAAATGAAGAGCCAACTGCATTATGCTTTTACATAA  547

seq1  ACCCAGTGAACATAATTTTGATAATAAACACTGCCTTGAATGTGTGGATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTGAACATAATTTTGATAATAAACACTGCCTTGAATGTGTGGATT  597

seq1  CTAGAGATCTGAGTTAAATTTTAGGATTCATTTGGTTAGAGTATAGCATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGATCTGAGTTAAATTTTAGGATTCATTTGGTTAGAGTATAGCATA  647

seq1  AGCTGGGCCCATTTTTGTGTTTTCAATAAAGTAGTTCTTCTGGAAGCAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGCCCATTTTTGTGTTTTCAATAAAGTAGTTCTTCTGGAAGCAGT  697

seq1  CCATATTCCTTTACAAACATGAAAGGCTGAGATGGCTTGTTTGTGTGCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTCCTTTACAAACATGAAAGGCTGAGATGGCTTGTTTGTGTGCTC  747

seq1  CTAGGCACAGCTCATTGTAACCTCCGTGACATATATGTTTGTTTTGCTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCACAGCTCATTGTAACCTCCGTGACATATATGTTTGTTTTGCTTT  797

seq1  ATATAAAATATTTCAGTGAATTC  822
      |||||||||||||||||||||||
seq2  ATATAAAATATTTCAGTGAATTC  820