BAC Information

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BAC

Clone NameB6Ng01-005F18
Chromosome3 (Build37)
Map Location 132,752,502 - 132,901,775
singlet/doubletdoublet
Overlap geneGstcd, Ints12, 9130221D24Rik
Upstream geneDkk2, LOC100039018, EG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt
Downstream genePpa2, E130014J05Rik, EG620205, LOC100039168, LOC668862, LOC100039199
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005F18.bB6Ng01-005F18.g
ACCDH842515DH842516
length1,1401,108
definitionDH842515|Mus musculus domesticus DNA, BAC clone: B6Ng01-005F18, 5' end.DH842516|Mus musculus domesticus DNA, BAC clone: B6Ng01-005F18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,752,502 - 132,753,662)(132,900,625 - 132,901,775)
sequence
gaattcttatgccaatatacatattagcagactatattttataaaataaa
aagtttgacatagttaacgagtatgaacatttactgatttctctcaaata
ttgaaatctaaatttaaagctgctcaattctctgcatcagacaatcttca
atattttgaatgtacaacttagctcatggtttagacattaaacaaagcag
cattatttggttacagaccccactttattaccatacagatttttaaaagt
gcttcttcataaataaataatagtcagttacctctagttaaaagtccaag
aaagaaatacagcttttagagttcatactatgtaatgtaggattataatt
caggggcagttaacccatgattaaaattagctatttggatcccagggcaa
gaaatttttattaagtaagaaaagtttggaagtggaaatgcttactgaaa
tcttagttatagaagaatatataatctctctggagattcaaagaactgtc
tgttgttattaagtcataatacgtgcagttaacagggaaggacagcataa
aatgtaaatgctgaaaataccatcaagcctgaaaaaaatactgagttacc
tcagcaagcaatacttattttatgattacaaagcttttaactcctgcctc
ccaagaaatgttcatagaagaaaccagtaagtcactttgcattcaaggat
aaaaacaacacataccaggcaacagtctaaaatactgatggacaccaggg
taagtcccaaatgtttttatggctactaaattactgctattaataaggcc
aaatggattatttgtttgtgcttatttaaaaccatgtgctgttgaaacaa
aagctagaaaacataagagtttaaaacaaaactccttaagtccataacca
caaagcttttagttttgtttgaaatggggaaatacatagtatctttccac
tcccccgggccccggacctcactgcatcccattttcccttcctgagagcc
caccctcatggccctactagtttaaggtgttttcatagtactatagaaca
cgttcaaacctcatctcctttgagtaagccttctaaaatgatggagtcac
atttcagcagcgtcatgcagtatgcctcctcagtgcagtt
gaattcattcgtctctttggctctcagacacagggtggctggctgtgact
gcttcccacggttgattcctgaggaagaaggttggagccaggctgtgcat
gctccttttgttgggacaaggaaagccttcctcagaatcaataccttgtc
ctttattctggattaatcctgagatgctggtatctgaggccagagcagaa
agctactttttctttaaaaaaaaaaaaagaagaaaaaatttccattgatt
ggccaagcctggtgctacattgcataacatgatgggttttgacctaagaa
tggcaaccaggaatgggtgagtgaataaaaactgagtaaaccaacaacaa
catttgccccagtcactgatggaataatctatggttagtcagtttttgcc
actgtgacaaaatcctgagaataggtgacttactgaaggaagggtttctt
ttgtcttgccccacagaggtttcagtccatgctggctggctgcctctcat
acttctgggtctgtgtgaggtagaggatcctgaggaaaagctgtgactga
gaggaagtcaggagtcagagagacagagaagagtcagagggaaaagatga
tcttattaaagcacacctcagtggctgcttcctcccaccagtccccactt
cctgcctcccatggctccttggtaatgacattgtattatgcatccatgac
agagttaatccaggagttaactcagaaccctcaggatcccatcactttcc
aaattccttcattagatagctaactcttccccaactccaatatctgctct
ggagaccaactaaaacaaaccatgccagtagttttggttatttttacgtc
tacatagaaagtccttcaagggccagtgagatggatggcttagttggtaa
aggtgcctgccaccaagcctgacagcttaacttcttctctgatatataag
gagaagagagatgaatcttgcaaattgtctctgactcgctagtgagcata
ccacatattatgatatactaaattaataacactatgatactgaacccatt
gccagatctaactagcatgataaatccatagttcggatatatctccgtat
taacgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_132752502_132753662
seq2: B6Ng01-005F18.b_47_1186

seq1  GAATTCTTATGCCAATATACATATTAGCAGACTATATTTTATAAAATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATGCCAATATACATATTAGCAGACTATATTTTATAAAATAAA  50

seq1  AAGTTTGACATAGTTAACGAGTATGAACATTTACTGATTTCTCTCAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGACATAGTTAACGAGTATGAACATTTACTGATTTCTCTCAAATA  100

seq1  TTGAAATCTAAATTTAAAGCTGCTCAATTCTCTGCATCAGACAATCTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATCTAAATTTAAAGCTGCTCAATTCTCTGCATCAGACAATCTTCA  150

seq1  ATATTTTGAATGTACAACTTAGCTCATGGTTTAGACATTAAACAAAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGAATGTACAACTTAGCTCATGGTTTAGACATTAAACAAAGCAG  200

seq1  CATTATTTGGTTACAGACCCCACTTTATTACCATACAGATTTTTAAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTGGTTACAGACCCCACTTTATTACCATACAGATTTTTAAAAGT  250

seq1  GCTTCTTCATAAATAAATAATAGTCAGTTACCTCTAGTTAAAAGTCCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTCATAAATAAATAATAGTCAGTTACCTCTAGTTAAAAGTCCAAG  300

seq1  AAAGAAATACAGCTTTTAGAGTTCATACTATGTAATGTAGGATTATAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATACAGCTTTTAGAGTTCATACTATGTAATGTAGGATTATAATT  350

seq1  CAGGGGCAGTTAACCCATGATTAAAATTAGCTATTTGGATCCCAGGGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCAGTTAACCCATGATTAAAATTAGCTATTTGGATCCCAGGGCAA  400

seq1  GAAATTTTTATTAAGTAAGAAAAGTTTGGAAGTGGAAATGCTTACTGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTTATTAAGTAAGAAAAGTTTGGAAGTGGAAATGCTTACTGAAA  450

seq1  TCTTAGTTATAGAAGAATATATAATCTCTCTGGAGATTCAAAGAACTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTTATAGAAGAATATATAATCTCTCTGGAGATTCAAAGAACTGTC  500

seq1  TGTTGTTATTAAGTCATAATACGTGCAGTTAACAGGGAAGGACAGCATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTATTAAGTCATAATACGTGCAGTTAACAGGGAAGGACAGCATAA  550

seq1  AATGTAAATGCTGAAAATACCATCAAGCCTGAAAAAAATACTGAGTTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAATGCTGAAAATACCATCAAGCCTGAAAAAAATACTGAGTTACC  600

seq1  TCAGCAAGCAATACTTATTTTATGATTACAAAGCTTTTAACTCCTGCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAGCAATACTTATTTTATGATTACAAAGCTTTTAACTCCTGCCTC  650

seq1  CCAAGAAATGTTCATAGAAGAAACCAGTAAGTCACTTTGCATTCAAGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAATGTTCATAGAAGAAACCAGTAAGTCACTTTGCATTCAAGGAT  700

seq1  AAAAACAACACATACCAGGCAACAGTCTAAAATACTGATGGACACCAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAACACATACCAGGCAACAGTCTAAAATACTGATGGACACCAGGG  750

seq1  TAAGTCCCAAATGTTTTTATGGCTACTAAATTACTGCTATTAATAAGGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCCCAAATGTTTTTATGGCTACTAAATTACTGCTATTAATAAGGCC  800

seq1  AAATGGATTA-TTGTTTGTGCTTATTTAAAACCATGTGCTGTTGAAACAA  849
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAATGGATTATTTGTTTGTGCTTATTTAAAACCATGTGCTGTTGAAACAA  850

seq1  AAGCTAGAAAACATAAGAGGTTTAAAACAAAACTCCTTAAGTCCATAACC  899
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAGCTAGAAAACATAAGA-GTTTAAAACAAAACTCCTTAAGTCCATAACC  899

seq1  ACAAAGCTTTTAGTTTTGTTTGAAATGGGGAAATACATAGTATTCTTTCC  949
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACAAAGCTTTTAGTTTTGTTTGAAATGGGGAAATACATAGTA-TCTTTCC  948

seq1  ACTCCCCC-GGCCCCGGACCTCACTGCATCCCATTTTCCCTTCCTTGAGA  998
      |||||||| ||||||||||||||||||||||||||||||||||| |||||
seq2  ACTCCCCCGGGCCCCGGACCTCACTGCATCCCATTTTCCCTTCC-TGAGA  997

seq1  GCCCACCCCTTCATGGCCCCTTACTAGTTTAAAGGTGTTTTTCATTAGTA  1048
      ||||||||  |||||||||  ||||||||| |||||| |||||| |||||
seq2  GCCCACCC--TCATGGCCC--TACTAGTTT-AAGGTG-TTTTCA-TAGTA  1040

seq1  CTATAGAACAACGTTCAAACCTCAATCTCCTTTTTGAAGTTAGGCCTCTT  1098
      ||||||||| ||||||||||||| |||||||||  |    || |||| | 
seq2  CTATAGAAC-ACGTTCAAACCTC-ATCTCCTTTGAG----TAAGCCT-TC  1083

seq1  TAAAATGATTGAGTCACAATTTCAGCAGCGTCAATGGCAGTGTATG-CTC  1147
      ||||||||| ||||||| |||||||||||||||   |||  ||||| |||
seq2  TAAAATGATGGAGTCAC-ATTTCAGCAGCGTCA--TGCA--GTATGCCTC  1128

seq1  CTCAAAGTGCAGTT  1161
      |||  |||||||||
seq2  CTC--AGTGCAGTT  1140

seq1: chr3_132900625_132901775
seq2: B6Ng01-005F18.g_69_1176 (reverse)

seq1  TTTCGTTTAATAACGGAGATATATATCCTATACCTATAGGATATGTATCA  50
      ||||| ||||| ||||||  ||||||||   | |||| |   || |||||
seq2  TTTCG-TTAAT-ACGGAG--ATATATCC--GAACTATGG---ATTTATCA  41

seq1  TAGCTAGTATAGATTCTGTGGCAAATGTGTTTCAGTTATTCATGGTGGTT  100
      | |||||| ||||   | |||| |||| | ||||||   |||| |||  |
seq2  T-GCTAGT-TAGA---TCTGGC-AATG-GGTTCAGT--ATCATAGTG--T  80

seq1  TATTTAAAATTTAAAGTTATATTTCATTAATTATGTGTGTATTGGCTCAC  150
      ||||   ||||||      ||| ||||  | |||||| ||||  ||||||
seq2  TATT---AATTTA-----GTATATCAT--AATATGTG-GTAT--GCTCAC  117

seq1  TAGCGGAGGTCAGAAGACAATTTGCAGAATTCAATTCTCTTCTTCCTCCT  200
      |||||   ||||| ||||||||||||  |||||  ||||||    |||||
seq2  TAGCG--AGTCAG-AGACAATTTGCAAGATTCATCTCTCTT----CTCCT  160

seq1  TATTATATCAGAGGAAGAAGTTAAGCTGTCAGGCTTGGTGGCAGGCACCT  250
      || ||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TA-TATATCAGA-GAAGAAGTTAAGCTGTCAGGCTTGGTGGCAGGCACCT  208

seq1  TTACCAACTAAGCCATCCATCTCACTGGCCCTTGAAGGACTTTTCTATGT  300
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTACCAACTAAGCCATCCATCTCACTGGCCCTTGAAGGAC-TTTCTATGT  257

seq1  AGACGTAAAAATAACCAAAACTACTGGCATGGTTTGTTTTAGTTGGTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGTAAAAATAACCAAAACTACTGGCATGGTTTGTTTTAGTTGGTCTC  307

seq1  CAGAGCAGATATTGGAGTTGGGGAAGAGTTAGCTATCTAATGAAGGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAGATATTGGAGTTGGGGAAGAGTTAGCTATCTAATGAAGGAATT  357

seq1  TGGAAAGTGATGGGATCCTGAGGGTTCTGAGTTAACTCCTGGATTAACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGTGATGGGATCCTGAGGGTTCTGAGTTAACTCCTGGATTAACTC  407

seq1  TGTCATGGATGCATAATACAATGTCATTACCAAGGAGCCATGGGAGGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGGATGCATAATACAATGTCATTACCAAGGAGCCATGGGAGGCAG  457

seq1  GAAGTGGGGACTGGTGGGAGGAAGCAGCCACTGAGGTGTGCTTTAATAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGGGACTGGTGGGAGGAAGCAGCCACTGAGGTGTGCTTTAATAAG  507

seq1  ATCATCTTTTCCCTCTGACTCTTCTCTGTCTCTCTGACTCCTGACTTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTTTTCCCTCTGACTCTTCTCTGTCTCTCTGACTCCTGACTTCCT  557

seq1  CTCAGTCACAGCTTTTCCTCAGGATCCTCTACCTCACACAGACCCAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCACAGCTTTTCCTCAGGATCCTCTACCTCACACAGACCCAGAAG  607

seq1  TATGAGAGGCAGCCAGCCAGCATGGACTGAAACCTCTGTGGGGCAAGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGAGGCAGCCAGCCAGCATGGACTGAAACCTCTGTGGGGCAAGACA  657

seq1  AAAGAAACCCTTCCTTCAGTAAGTCACCTATTCTCAGGATTTTGTCACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAACCCTTCCTTCAGTAAGTCACCTATTCTCAGGATTTTGTCACAG  707

seq1  TGGCAAAAACTGACTAACCATAGATTATTCCATCAGTGACTGGGGCAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAAAACTGACTAACCATAGATTATTCCATCAGTGACTGGGGCAAAT  757

seq1  GTTGTTGTTGGTTTACTCAGTTTTTATTCACTCACCCATTCCTGGTTGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTGGTTTACTCAGTTTTTATTCACTCACCCATTCCTGGTTGCC  807

seq1  ATTCTTAGGTCAAAACCCATCATGTTATGCAATGTAGCACCAGGCTTGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAGGTCAAAACCCATCATGTTATGCAATGTAGCACCAGGCTTGGC  857

seq1  CAATCAATGGAAATTTTTTCTTCTTTTTTTTTTTTTAAAGAAAAAGTAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAATGGAAATTTTTTCTTCTTTTTTTTTTTTTAAAGAAAAAGTAGC  907

seq1  TTTCTGCTCTGGCCTCAGATACCAGCATCTCAGGATTAATCCAGAATAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCTCTGGCCTCAGATACCAGCATCTCAGGATTAATCCAGAATAAA  957

seq1  GGACAAGGTATTGATTCTGAGGAAGGCTTTCCTTGTCCCAACAAAAGGAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGGTATTGATTCTGAGGAAGGCTTTCCTTGTCCCAACAAAAGGAG  1007

seq1  CATGCACAGCCTGGCTCCAACCTTCTTCCTCAGGAATCAACCGTGGGAAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACAGCCTGGCTCCAACCTTCTTCCTCAGGAATCAACCGTGGGAAG  1057

seq1  CAGTCACAGCCAGCCACCCTGTGTCTGAGAGCCAAAGAGACGAATGAATT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACAGCCAGCCACCCTGTGTCTGAGAGCCAAAGAGACGAATGAATT  1107

seq1  C  1151
      |
seq2  C  1108