BAC Information

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BAC

Clone NameB6Ng01-005I21
Chromosome3 (Build37)
Map Location 72,474,708 - 72,596,661
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667385, LOC100041459
Downstream gene2010204N08Rik, Slitrk3, Bche
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005I21.bB6Ng01-005I21.g
ACCDH842660DH842661
length1,057212
definitionDH842660|Mus musculus domesticus DNA, BAC clone: B6Ng01-005I21, 5' end.DH842661|Mus musculus domesticus DNA, BAC clone: B6Ng01-005I21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,595,603 - 72,596,661)(72,474,708 - 72,474,919)
sequence
gaattcaataataacacatataaactaccaatttttaatgttacccaaag
acattttataatgtagttattttcaagagaaaaatgaatgaagaatattt
tgtatatggagggtcaaagtaagaccaattaatgcattaataatgagaga
gtttaagtatagcaaatacttaatctgtagatcgatcgatagatagatag
atagacagacagacagatatgcatatatgtgtttgtgtgttatttttcta
aatgtcttttctatcgtaatactttaaaatcacatatttctgtagtgtag
gttttaaacaaatatatatttaaaatttatattttatatgtgtgagtgtc
tgcctgcaaatttgtctatataccatgtgcatgcttggttcctggggagg
tcaaaagaggtcattgcaggcccttgaactagtgttgtagataattgtat
tctgccatgtggatgctgggtcctggacccaggttctctgcaagagcaaa
cagtattcttctctggtgagccctatgaagaaatatttttattttcatag
aatgatttttttatataaaatttcatagtagttccttcttcagtaaggta
gaggctgtttttctccttcttctcttttgctgttgtctgtgcagttgcct
gggtccccagtgagataataatgagctctatcatctacttttaatatgtc
cattaattcaaactgtgcagatatggactgatatatatttggtccaattt
ggggagtatcgatttggggatatggaatttgtatatgggacacttcaatt
ctattatggaattttggtaccagaagggaaaaagatttcttgaaaaggag
aaagagactaagcagacagggaagatcagacccaaatggagctgagagat
aagcctatgtggttctagcaatagtgttattttagctcaattccatttcc
aagagcttttttcttaccctgcttaattaagggctcctcctctcctgcta
aggctgccatgactatagtggattttctttatgatcaaaagcaaggttaa
aaggttc
aactccagttctctggaagagaaatcaatgctcttaatcactgaaggatc
tttccagctcctaaaacagatactcaaatattttcatttgatactcccat
tgatgtacttttatgaaaaattaaaagagatatgatttaggaaagaaaga
gagagagagagagagagagagggagagagagaaagagagagagaaatggg
gaggaagaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_72595603_72596661
seq2: B6Ng01-005I21.b_44_1100 (reverse)

seq1  GAACCTTCTAAACTTGCTTTTTGATTCATAAAGAAAAT-CACTATCAGTC  49
      ||||||| ||| ||||| |||||| ||||||||||||| |||||| ||||
seq2  GAACCTTTTAACCTTGC-TTTTGA-TCATAAAGAAAATCCACTAT-AGTC  47

seq1  ATGGCAGCCTTAAGCAGGAGAGGAGGAGCCCTAATTAAAGCAGGGTAAG-  98
      ||||||||||| |||||||||||||||||||| | | |||||||||||| 
seq2  ATGGCAGCCTT-AGCAGGAGAGGAGGAGCCCTTAATTAAGCAGGGTAAGA  96

seq1  AAACAGCTCTTGGAAATGGAATTGAGCTAAAATAACACTATTGCTAGAAC  148
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCTCTTGGAAATGGAATTGAGCTAAAATAACACTATTGCTAGAAC  146

seq1  CACATAGGCTTATCTCTCAGCTCCATTTGGGTCTGATCTTCCCTGTCTGC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGGCTTATCTCTCAGCTCCATTTGGGTCTGATCTTCCCTGTCTGC  196

seq1  TTAGTCTCTTTCTCCTTTTCAAGAATTCTTTTTCCCTTCTGGTACCAAAA  248
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTAGTCTCTTTCTCCTTTTCAAGAAATCTTTTTCCCTTCTGGTACCAAAA  246

seq1  TTCCATAATAGAATTGAAGTGTCCCATATACAAATTCCATATCCCCAAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATAATAGAATTGAAGTGTCCCATATACAAATTCCATATCCCCAAAT  296

seq1  CGATACTCCCCAAATTGGACCAAATATATATCAGTCCATATCTGCACAGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATACTCCCCAAATTGGACCAAATATATATCAGTCCATATCTGCACAGT  346

seq1  TTGAATTAATGGACATATTAAAAGTAGATGATAGAGCTCATTATTATCTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTAATGGACATATTAAAAGTAGATGATAGAGCTCATTATTATCTC  396

seq1  ACTGGGGACCCAGGCAACTGCACAGACAACAGCAAAAGAGAAGAAGGAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGACCCAGGCAACTGCACAGACAACAGCAAAAGAGAAGAAGGAGA  446

seq1  AAAACAGCCTCTACCTTACTGAAGAAGGAACTACTATGAAATTTTATATA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGCCTCTACCTTACTGAAGAAGGAACTACTATGAAATTTTATATA  496

seq1  AAAAAATCATTCTATGAAAATAAAAATATTTCTTCATAGGGCTCACCAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCATTCTATGAAAATAAAAATATTTCTTCATAGGGCTCACCAGA  546

seq1  GAAGAATACTGTTTGCTCTTGCAGAGAACCTGGGTCCAGGACCCAGCATC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATACTGTTTGCTCTTGCAGAGAACCTGGGTCCAGGACCCAGCATC  596

seq1  CACATGGCAGAATACAATTATCTACAACACTAGTTCAAGGGCCTGCAATG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGCAGAATACAATTATCTACAACACTAGTTCAAGGGCCTGCAATG  646

seq1  ACCTCTTTTGACCTCCCCAGGAACCAAGCATGCACATGGTATATAGACAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTTTGACCTCCCCAGGAACCAAGCATGCACATGGTATATAGACAA  696

seq1  ATTTGCAGGCAGACACTCACACATATAAAATATAAATTTTAAATATATAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAGGCAGACACTCACACATATAAAATATAAATTTTAAATATATAT  746

seq1  TTGTTTAAAACCTACACTACAGAAATATGTGATTTTAAAGTATTACGATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAAAACCTACACTACAGAAATATGTGATTTTAAAGTATTACGATA  796

seq1  GAAAAGACATTTAGAAAAATAACACACAAACACATATATGCATATCTGTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGACATTTAGAAAAATAACACACAAACACATATATGCATATCTGTC  846

seq1  TGTCTGTCTATCTATCTATCTATCGATCGATCTACAGATTAAGTATTTGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTCTATCTATCTATCTATCGATCGATCTACAGATTAAGTATTTGC  896

seq1  TATACTTAAACTCTCTCATTATTAATGCATTAATTGGTCTTACTTTGACC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTAAACTCTCTCATTATTAATGCATTAATTGGTCTTACTTTGACC  946

seq1  CTCCATATACAAAATATTCTTCATTCATTTTTCTCTTGAAAATAACTACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATATACAAAATATTCTTCATTCATTTTTCTCTTGAAAATAACTACA  996

seq1  TTATAAAATGTCTTTGGGTAACATTAAAAATTGGTAGTTTATATGTGTTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAATGTCTTTGGGTAACATTAAAAATTGGTAGTTTATATGTGTTA  1046

seq1  TTATTGAATTC  1059
      |||||||||||
seq2  TTATTGAATTC  1057

seq1: chr3_72474708_72474919
seq2: B6Ng01-005I21.g_73_284

seq1  AACTCCAGTTCTCTGGAAGAGAAATCAATGCTCTTAATCACTGAAGGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCAGTTCTCTGGAAGAGAAATCAATGCTCTTAATCACTGAAGGATC  50

seq1  TTTCCAGCTCCTAAAACAGATACTCAAATATTTTCATTTGATACTCCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGCTCCTAAAACAGATACTCAAATATTTTCATTTGATACTCCCAT  100

seq1  TGATGTACTTTTATGAAAAATTAAAAGAGATATGATTTAGGAAAGAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTACTTTTATGAAAAATTAAAAGAGATATGATTTAGGAAAGAAAGA  150

seq1  GAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAAAGAGAGAGAGAAATGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAAAGAGAGAGAGAAATGGG  200

seq1  GAGGAAGAAAGG  212
      ||||||||||||
seq2  GAGGAAGAAAGG  212