BAC Information

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BAC

Clone NameB6Ng01-005K18
Chromosome3 (Build37)
Map Location 104,265,882 - 104,375,277
singlet/doubletdoublet
Overlap geneLrig2
Upstream geneSyt6, Atg4a-ps, LOC100043538, Olfml3, Hipk1, Dclre1b, Ap4b1, Gm566, Ptpn22, LOC668452, Rsbn1, Phtf1, Magi3, EG433634, LOC668622
Downstream geneSlc16a1, EG624251, 7530404M11Rik, Ppm1j, Rhoc, Mov10, Capza1, St7l, LOC100043572, Wnt2b, Cttnbp2nl, 4930564D02Rik, 1700095B22Rik, Kcnd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005K18.bB6Ng01-005K18.g
ACCDH842744DH842745
length1,0511,162
definitionDH842744|Mus musculus domesticus DNA, BAC clone: B6Ng01-005K18, 5' end.DH842745|Mus musculus domesticus DNA, BAC clone: B6Ng01-005K18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,374,223 - 104,375,277)(104,265,882 - 104,267,052)
sequence
gaattcactttgtagatcaggctggtcttgagtactgggaagaaagatgt
gtgccacctctgccacctctgccacctctgctacctctgccctgtgagat
ctctgctttctgttgctgctgtttgggcttccttctttcctccctctccc
cctcccttctttccttcctcccttcctcctgcctttcctctctctctccc
tccttccttcccttccttcttatttcccattctctcaaacttccttttta
tcctttctcttctgtgtagcccaagttggcctggaactcctgatcctccc
aactcagcctcctcggtgctgagctcactggtgtgccccaccctgccggg
cctaaggtctcagtctttcctgtggatggttcaaggacctgcagcctctc
tccatctctcagtggggccagcttgccgctgcctcggcccttcttttact
attgtattttcaggttttgtctgcagcacgctgcacactcctgcctgagc
cccgcttgttctttagggctcagggtaagcgctccctcctcacagatgct
taaggcggtcttcccctgagacactgcagctccttctgctgagttcacag
acaaccctggggtttctcagcatttgtaattctgctgggacctctgatat
ctgtcttctggccaagggacgggaactggcatattttgtttctatctcat
tcttgtttcttcttccaacgactggaacctaaaaggcacacaataaatat
ttgttgagtggatgaacttgcccttagtgggcccacgttggcagttaggg
tcagttagtttacgtgttcataaaacatgtttggataatctatgccaggc
tctttccagggatcattgaaggtttgtttcatttaatggtgttgagggtt
gaatccagggctttgtcctgctctcaggtactccctcaactgagctgtgc
atccaccaccacccactttttaaggatgtttttattttgagataagttca
gaacagatcttgaactcactttgggttttattgttgggggggtctaagac
a
gaattctaacgttaaatctctgtctaagttggagagactaaatttcaacc
aagggatccaagacaggcctagacctctgagacacgtgtgtggcttgagc
aaacaaaagcaaaacaggcattgctatgaattgagagcccatgttacttt
tatgagacaagaagttaagtgaggtagctgttcaaactatccctagtcaa
accctctctcctgtgcctgtcactttctatagaagtgagggtgtgaagag
acaatgtcccagtcaccctatcaggggacattttatagcccttttaagtt
tgccattgcagtctgaaagtcattttgccctttaaactttactaagtatc
tacctgtcagcaggagaaccaaatgcctttggatgttatctgaaggatgc
tcatctctaaaggaatgagaaaggcttgaaatgagtttctagaccatctc
ttctggtcatgagagagacccaggagcctcagttttgtccttcatccctg
tttaagggtaatgtgtttctttctgtaagacagccttctctggttaagac
tttatagacaattttcattctattttgcacaaagttaaatgaatgaatgt
tttatcctaaaatattgcccaggctaatggagaaactatacactgaacta
tacccagtaatacaggctgaaattgtaactacgaacagcaaagtgcctac
cgtcagtgcctctgtgtgtgtacccgttggcaggaggcataagttgctga
tggctgcctgcctcagagttgctgtagccttcctgtggttcagacaatgt
tccttgtgaagacaaatagctgggaatgtctgcaggcaaattaagctcct
ctgtaaagagacatcttgtaactctcaaactcagacagcttaagtcaata
cacagaaaggcaattttatagtgtgttccactttgacactggccctggaa
atggtatggacttgggacccaacagctctcatacttcccttagaactttt
tttattaaagttctctcagagtttcatttagactattactagtctgcaaa
tagcctcatgtgtaagtgcttgcctaattgtacaggctggtgtgccagtt
cccgaataccactggctaatgggctgtagtaaatggtttcccaacggaaa
aaaaaaaaaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_104374223_104375277
seq2: B6Ng01-005K18.b_39_1089 (reverse)

seq1  TGTCTTAGACACCACCAACAATAAAACCCAAAGTGAGTTCAAGATCTGTC  50
      |||||||||| || ||||||||||||||||||||||||||||||||||| 
seq2  TGTCTTAGACCCCCCCAACAATAAAACCCAAAGTGAGTTCAAGATCTGTT  50

seq1  TTGAACTTATCTCAAAATAAAAACATCCTTTAAAAAGTGGGTGGTGGTGG  100
       ||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTGAACTTATCTCAAAATAAAAACATCC-TTAAAAAGTGGGTGGTGGTGG  99

seq1  ATGCACAGCTCAGTTGAGGGAGTACCTGAGAGCAGGGACAAAGCCCTGGA  150
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATGCACAGCTCAGTTGAGGGAGTACCTGAGAGCA-GGACAAAGCCCTGGA  148

seq1  TTCAACCCTCAACACCATTGAAATGAAACAAAACCTTCAATGATCCCTGG  200
      ||||||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  TTCAACCCTCAACACCATT-AAATGAAAC-AAACCTTCAATGATCCCTGG  196

seq1  AAAGAGCCTGGCATAGATTATCCAAACATGTTTTATGAACACGTAAACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCCTGGCATAGATTATCCAAACATGTTTTATGAACACGTAAACTA  246

seq1  ACTGACCCTAACTGCCAACGTGGGCCCACTAAGGGCAAGTTCATCCACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCCTAACTGCCAACGTGGGCCCACTAAGGGCAAGTTCATCCACTC  296

seq1  AACAAATATTTATTGTGTGCCTTTTAGGTTCCAGTCGTTGGAAGAAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATATTTATTGTGTGCCTTTTAGGTTCCAGTCGTTGGAAGAAGAAA  346

seq1  CAAGAATGAGATAGAAACAAAATATGCCAGTTCCCGTCCCTTGGCCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATGAGATAGAAACAAAATATGCCAGTTCCCGTCCCTTGGCCAGAA  396

seq1  GACAGATATCAGAGGTCCCAGCAGAATTACAAATGCTGAGAAACCCCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATATCAGAGGTCCCAGCAGAATTACAAATGCTGAGAAACCCCAGG  446

seq1  GTTGTCTGTGAACTCAGCAGAAGGAGCTGCAGTGTCTCAGGGGAAGACCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTGTGAACTCAGCAGAAGGAGCTGCAGTGTCTCAGGGGAAGACCG  496

seq1  CCTTAAGCATCTGTGAGGAGGGAGCGCTTACCCTGAGCCCTAAAGAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAGCATCTGTGAGGAGGGAGCGCTTACCCTGAGCCCTAAAGAACAA  546

seq1  GCGGGGCTCAGGCAGGAGTGTGCAGCGTGCTGCAGACAAAACCTGAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGGCTCAGGCAGGAGTGTGCAGCGTGCTGCAGACAAAACCTGAAAAT  596

seq1  ACAATAGTAAAAGAAGGGCCGAGGCAGCGGCAAGCTGGCCCCACTGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGTAAAAGAAGGGCCGAGGCAGCGGCAAGCTGGCCCCACTGAGAG  646

seq1  ATGGAGAGAGGCTGCAGGTCCTTGAACCATCCACAGGAAAGACTGAGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAGAGGCTGCAGGTCCTTGAACCATCCACAGGAAAGACTGAGACC  696

seq1  TTAGGCCCGGCAGGGTGGGGCACACCAGTGAGCTCAGCACCGAGGAGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCCCGGCAGGGTGGGGCACACCAGTGAGCTCAGCACCGAGGAGGCT  746

seq1  GAGTTGGGAGGATCAGGAGTTCCAGGCCAACTTGGGCTACACAGAAGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGGAGGATCAGGAGTTCCAGGCCAACTTGGGCTACACAGAAGAGA  796

seq1  AAGGATAAAAAGGAAGTTTGAGAGAATGGGAAATAAGAAGGAAGGGAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATAAAAAGGAAGTTTGAGAGAATGGGAAATAAGAAGGAAGGGAAGG  846

seq1  AAGGAGGGAGAGAGAGAGGAAAGGCAGGAGGAAGGGAGGAAGGAAAGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGGAGAGAGAGAGGAAAGGCAGGAGGAAGGGAGGAAGGAAAGAAG  896

seq1  GGAGGGGGAGAGGGAGGAAAGAAGGAAGCCCAAACAGCAGCAACAGAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGGAGAGGGAGGAAAGAAGGAAGCCCAAACAGCAGCAACAGAAAG  946

seq1  CAGAGATCTCACAGGGCAGAGGTAGCAGAGGTGGCAGAGGTGGCAGAGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATCTCACAGGGCAGAGGTAGCAGAGGTGGCAGAGGTGGCAGAGGT  996

seq1  GGCACACATCTTTCTTCCCAGTACTCAAGACCAGCCTGATCTACAAAGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACATCTTTCTTCCCAGTACTCAAGACCAGCCTGATCTACAAAGTG  1046

seq1  AATTC  1055
      |||||
seq2  AATTC  1051

seq1: chr3_104265882_104267052
seq2: B6Ng01-005K18.g_72_1233

seq1  GAATTCTAACGTTAAATCTCTGTCTAAGTTGGAGAGACTAAATTTCAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACGTTAAATCTCTGTCTAAGTTGGAGAGACTAAATTTCAACC  50

seq1  AAGGGATCCAAGACAGGCCTAGACCTCTGAGACACGTGTGTGGCTTGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATCCAAGACAGGCCTAGACCTCTGAGACACGTGTGTGGCTTGAGC  100

seq1  AAACAAAAGCAAAACAGGCATTGCTATGAATTGAGAGCCCATGTTACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAGCAAAACAGGCATTGCTATGAATTGAGAGCCCATGTTACTTT  150

seq1  TATGAGACAAGAAGTTAAGTGAGGTAGCTGTTCAAACTATCCCTAGTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGACAAGAAGTTAAGTGAGGTAGCTGTTCAAACTATCCCTAGTCAA  200

seq1  ACCCTCTCTCCTGTGCCTGTCACTTTCTATAGAAGTGAGGGTGTGAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTCTCCTGTGCCTGTCACTTTCTATAGAAGTGAGGGTGTGAAGAG  250

seq1  ACAATGTCCCAGTCACCCTATCAGGGGACATTTTATAGCCCTTTTAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTCCCAGTCACCCTATCAGGGGACATTTTATAGCCCTTTTAAGTT  300

seq1  TGCCATTGCAGTCTGAAAGTCATTTTGCCCTTTAAACTTTACTAAGTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTGCAGTCTGAAAGTCATTTTGCCCTTTAAACTTTACTAAGTATC  350

seq1  TACCTGTCAGCAGGAGAACCAAATGCCTTTGGATGTTATCTGAAGGATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTCAGCAGGAGAACCAAATGCCTTTGGATGTTATCTGAAGGATGC  400

seq1  TCATCTCTAAAGGAATGAGAAAGGCTTGAAATGAGTTTCTAGACCATCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCTAAAGGAATGAGAAAGGCTTGAAATGAGTTTCTAGACCATCTC  450

seq1  TTCTGGTCATGAGAGAGACCCAGGAGCCTCAGTTTTGTCCTTCATCCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTCATGAGAGAGACCCAGGAGCCTCAGTTTTGTCCTTCATCCCTG  500

seq1  TTTAAGGGTAATGTGTTTCTTTCTGTAAGACAGCCTTCTCTGGTTAAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGGTAATGTGTTTCTTTCTGTAAGACAGCCTTCTCTGGTTAAGAC  550

seq1  TTTATAGACAATTTTCATTCTATTTTGCACAAAGTTAAATGAATGAATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGACAATTTTCATTCTATTTTGCACAAAGTTAAATGAATGAATGT  600

seq1  TTTATCCTAAAATATTGCCCAGGCTAATGGAGAAACTATACACTGAACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCTAAAATATTGCCCAGGCTAATGGAGAAACTATACACTGAACTA  650

seq1  TACCCAGTAATACAGGCTGAAATTGTAACTACGAACAGCAAAGTGCCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGTAATACAGGCTGAAATTGTAACTACGAACAGCAAAGTGCCTAC  700

seq1  CGTCAGTGCCTCTGTGTGTGTACCCGTTGGCAGGAGGCATAAGTTGCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAGTGCCTCTGTGTGTGTACCCGTTGGCAGGAGGCATAAGTTGCTGA  750

seq1  TGGCTGCCTGCCTCAGAGTTGCTGTAGCCTTCCTGTGGTTCAGACAATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCCTGCCTCAGAGTTGCTGTAGCCTTCCTGTGGTTCAGACAATGT  800

seq1  TCCTTGTGAAGACAAATAGCTGGGAATGTCTGCAGGCAAATTAAGCTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTGAAGACAAATAGCTGGGAATGTCTGCAGGCAAATTAAGCTCCT  850

seq1  CTGTAAAGAGACATC-TGTAACTCTCAAACTCAGACAGCTGAAGTCAATA  899
      ||||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  CTGTAAAGAGACATCTTGTAACTCTCAAACTCAGACAGCTTAAGTCAATA  900

seq1  CACAG-AAGGCAATTTTATAGTGTGTTCCACTTTGACACTGG-CCTGGAA  947
      ||||| |||||||||||||||||||||||||||||||||||| |||||||
seq2  CACAGAAAGGCAATTTTATAGTGTGTTCCACTTTGACACTGGCCCTGGAA  950

seq1  ATGGTATGGACTTGGGACCCCAACAGCTCTTCATACTTCCCTTAGAAACT  997
      ||||||||||||||||| ||||||||||| |||||||||||||||||   
seq2  ATGGTATGGACTTGGGA-CCCAACAGCTC-TCATACTTCCCTTAGAA--C  996

seq1  TTTTTTTATTAAAGTTCTTCTCAGAGTTTCATTTTAGAACTATTACTTAG  1047
      ||||||||||||||||| ||||||||||||| ||||| |||||||| |||
seq2  TTTTTTTATTAAAGTTC-TCTCAGAGTTTCA-TTTAG-ACTATTAC-TAG  1042

seq1  TCTGCAAATACAGCTCAGTGGTAAAGTGCTTGCCTAACATGTACAGGCTG  1097
      ||||||||||   |||| ||   ||||||||||||||  |||||||||||
seq2  TCTGCAAATA-GCCTCA-TGTGTAAGTGCTTGCCTAA-TTGTACAGGCTG  1089

seq1  TGGGTTCAG-TCCCCAGAACCACTGGC-AAAGGGCTGAAGGTAAAAGGGT  1145
        |   ||| |||| |  ||||||||| || |||||| | ||||| || |
seq2  GTGTGCCAGTTCCCGAATACCACTGGCTAATGGGCTGTA-GTAAATGGTT  1138

seq1  TACCAAAGGGAAAAAAAAAAAAACCC  1171
      | |||| ||  |||||||||||||||
seq2  TCCCAACGG--AAAAAAAAAAAACCC  1162