BAC Information

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BAC

Clone NameB6Ng01-006A10
Chromosome3 (Build37)
Map Location 48,354,783 - 48,488,578
singlet/doubletdoublet
Overlap gene1700018B24Rik
Upstream geneLOC666202, LOC666208
Downstream geneLOC100039404, EG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006A10.bB6Ng01-006A10.g
ACCDH842998DH842999
length9841,142
definitionDH842998|Mus musculus domesticus DNA, BAC clone: B6Ng01-006A10, 5' end.DH842999|Mus musculus domesticus DNA, BAC clone: B6Ng01-006A10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,488,036 - 48,488,578)(48,354,783 - 48,355,926)
sequence
gaattctttagaatataagtcatgaatcattaaaggatttatttagtatc
tggagcattgaaaaggtttggaattcattttcaaaagaggtaaagtaaac
tacgatctcctgggctttggcttccagaactcacattctcagtgaatgat
atttttccctcccggtgtgctacctgatcgggaggtgtacaaaataagag
atgaagcaaatttcccatgagtataatgtgaaatcacatcagagaataat
gttgtatttttgtttaaaaactaaatcaaatgcttgtacatgaactccca
catagggtatgttaagataacatgtgttctagtatcaagtttttccctgc
attttctacatggcttttgtctttagtcactacttgcagtctagaaggaa
gaattaacttctaagattcatttttcatccatgaaataatgagtatccag
aaatcagtagcatatcatgtccactaatattttcaagaagtaagtaggct
ggaaattggctgctgctgttgtgtatgtaagggggcacctctaggacaag
ctagagagagagacctgggatggggaacgcttcaagaagtctatagggtg
agactcctagcagtggggttatagaactggaagtggccacttcctgtagc
taggtaggagcaccaatggatgaataaggacaccaatcacccacaaaact
tttgacccaaaatttgtgtctacaagaaatgcagggacaaagatggagca
aaggctgagggaatagcaatcacgtgattggttcaacttgagcccatccc
gtgaagaaacactaaatcctgacactattaatgttactctgttatacttg
caaacagcaatctagcatgactctcctctaagagtctccatccagcttct
gactgaaagagatgcagaaacacactgccaaacatcagatgtagctcact
gggtttgcggaagagtttgggggaagtacagagg
gaattcaggtatggagaactgtgttatagggtcatctctgggtgcagaca
gacaccagattggtctttttcccagcttggttcctatgtcctgttggctg
tgagggtccctcttgggtcaggaatttgaagagaagtggtggtcttactt
gtactcataggtttgtaggcactcctgggagaccagctcaatccttgcag
tattggtgtatatagctctgtggcataggatcagctctggatgcagagag
agattggaagacttctgttccatgcagcccctcattttctgtctcctgag
ggtgctgggtgggttgctctgagcagcagtggtggtcctacctgtactca
taggcctgtctgcactcctggaaggctacaaaataaatatttttaagaca
tataataaaattcaaatgaatgcaaataattcaacagacaagtgaaaaca
gtaaaaatatgcatactaaatatgagaaaaattctatttgctcttaggtt
ctcatacttctctgtgaaacagaaacttatgtaactaaggttcagtcatc
tggatgttaacaatgcaatgaaggaagacaaaatgctaaaaagagcgctc
agtgggatagatcaaacagaaactgtgagtgcaagataattcatctgaca
actatcaaaaagaagaaagagaaaatgaacaaaatggaaagaaatacaaa
tctaaagcttaccagatctataaaacattatcaaatagaagtaagcaaac
aaaaacccaaaacccaaatgtaaccaataataataataataatgataata
ataataataaagagcagacaaagaaacagacaaacaaacaaaaatagtga
cagaaaaacacagtggcttactgttcagttttacagaaggaattcctggt
acctgagactgcatagataaaattgaggaaaattgaaaagcattatatta
tttgaagtaagtcagactaagcaagaaaaatcttacatgatgtcacctac
atagaaattcgagacttgttgatacttactatagaatagaatggttagtt
tgacggaatttgattgaattgggaaaggtggactggggttactagtaaag
atttataaaattatttcattttacaagtgagaattttttata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_48488036_48488578
seq2: B6Ng01-006A10.b_42_584 (reverse)

seq1  TAGAGGTGCCCCCTTACATACACAACAGCAGCAGCCAATTTCCAGCCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGTGCCCCCTTACATACACAACAGCAGCAGCCAATTTCCAGCCTAC  50

seq1  TTACTTCTTGAAAATATTAGTGGACATGATATGCTACTGATTTCTGGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCTTGAAAATATTAGTGGACATGATATGCTACTGATTTCTGGATA  100

seq1  CTCATTATTTCATGGATGAAAAATGAATCTTAGAAGTTAATTCTTCCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTATTTCATGGATGAAAAATGAATCTTAGAAGTTAATTCTTCCTTC  150

seq1  TAGACTGCAAGTAGTGACTAAAGACAAAAGCCATGTAGAAAATGCAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGCAAGTAGTGACTAAAGACAAAAGCCATGTAGAAAATGCAGGGA  200

seq1  AAAACTTGATACTAGAACACATGTTATCTTAACATACCCTATGTGGGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTGATACTAGAACACATGTTATCTTAACATACCCTATGTGGGAGT  250

seq1  TCATGTACAAGCATTTGATTTAGTTTTTAAACAAAAATACAACATTATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTACAAGCATTTGATTTAGTTTTTAAACAAAAATACAACATTATTC  300

seq1  TCTGATGTGATTTCACATTATACTCATGGGAAATTTGCTTCATCTCTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGTGATTTCACATTATACTCATGGGAAATTTGCTTCATCTCTTAT  350

seq1  TTTGTACACCTCCCGATCAGGTAGCACACCGGGAGGGAAAAATATCATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACACCTCCCGATCAGGTAGCACACCGGGAGGGAAAAATATCATTC  400

seq1  ACTGAGAATGTGAGTTCTGGAAGCCAAAGCCCAGGAGATCGTAGTTTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAATGTGAGTTCTGGAAGCCAAAGCCCAGGAGATCGTAGTTTACT  450

seq1  TTACCTCTTTTGAAAATGAATTCCAAACCTTTTCAATGCTCCAGATACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTCTTTTGAAAATGAATTCCAAACCTTTTCAATGCTCCAGATACTA  500

seq1  AATAAATCCTTTAATGATTCATGACTTATATTCTAAAGAATTC  543
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATCCTTTAATGATTCATGACTTATATTCTAAAGAATTC  543

seq1: chr3_48354783_48355926
seq2: B6Ng01-006A10.g_68_1209

seq1  GAATTCAGGTATGGAGAACTGTGTTATAGGGTCATCTCTGGGTGCAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTATGGAGAACTGTGTTATAGGGTCATCTCTGGGTGCAGACA  50

seq1  GACACCAGATTGGTCTTTTTCCCAGCTTGGTTCCTATGTCCTGTTGGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCAGATTGGTCTTTTTCCCAGCTTGGTTCCTATGTCCTGTTGGCTG  100

seq1  TGAGGGTCCCTCTTGGGTCAGGAATTTGAAGAGAAGTGGTGGTCTTACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTCCCTCTTGGGTCAGGAATTTGAAGAGAAGTGGTGGTCTTACTT  150

seq1  GTACTCATAGGTTTGTAGGCACTCCTGGGAGACCAGCTCAATCCTTGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCATAGGTTTGTAGGCACTCCTGGGAGACCAGCTCAATCCTTGCAG  200

seq1  TATTGGTGTATATAGCTCTGTGGCATAGGATCAGCTCTGGATGCAGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTGTATATAGCTCTGTGGCATAGGATCAGCTCTGGATGCAGAGAG  250

seq1  AGATTGGAAGACTTCTGTTCCATGCAGCCCCTCATTTTCTGTCTCCTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGGAAGACTTCTGTTCCATGCAGCCCCTCATTTTCTGTCTCCTGAG  300

seq1  GGTGCTGGGTGGGTTGCTCTGAGCAGCAGTGGTGGTCCTACCTGTACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGGGTGGGTTGCTCTGAGCAGCAGTGGTGGTCCTACCTGTACTCA  350

seq1  TAGGCCTGTCTGCACTCCTGGAAGGCTACAAAATAAATATTTTTAAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCTGTCTGCACTCCTGGAAGGCTACAAAATAAATATTTTTAAGACA  400

seq1  TATAATAAAATTCAAATGAATGCAAATAATTCAACAGACAAGTGAAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAAAATTCAAATGAATGCAAATAATTCAACAGACAAGTGAAAACA  450

seq1  GTAAAAATATGCATACTAAATATGAGAAAAATTCTATTTGCTCTTAGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAATATGCATACTAAATATGAGAAAAATTCTATTTGCTCTTAGGTT  500

seq1  CTCATACTTCTCTGTGAAACAGAAACTTATGTAACTAAGGTTCAGTCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATACTTCTCTGTGAAACAGAAACTTATGTAACTAAGGTTCAGTCATC  550

seq1  TGGATGTTAACAATGCAATGAAGGAAGACAAAATGCTAAAAAGAGCGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTTAACAATGCAATGAAGGAAGACAAAATGCTAAAAAGAGCGCTC  600

seq1  AGTGGGATAGATCAAACAGAAACTGTGAGTGCAAGATAATTCATCTGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGATAGATCAAACAGAAACTGTGAGTGCAAGATAATTCATCTGACA  650

seq1  ACTATCAAAAAGAAGAAAGAGAAAATGAACAAAATGGAAAGAAATACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCAAAAAGAAGAAAGAGAAAATGAACAAAATGGAAAGAAATACAAA  700

seq1  TCTAAAGCTTACCAGATCTATAAAACATTATCAAATAGAAGTAAGCAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGCTTACCAGATCTATAAAACATTATCAAATAGAAGTAAGCAAAC  750

seq1  AAAAACCCAAAACCCAAATGTAACCAATAATAATAATAATAATGATAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCCAAAACCCAAATGTAACCAATAATAATAATAATAATGATAATA  800

seq1  ATAATAATAAAGAGCAGACAAAGAAACAGACAAACAAACAAAAATAGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATAAAGAGCAGACAAAGAAACAGACAAACAAACAAAAATAGTGA  850

seq1  CAGAAAAACACAGTGGCTTACTGTTCAGTTTTACAGAAGGAATTCCTGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAACACAGTGGCTTACTGTTCAGTTTTACAGAAGGAATTCCTGGT  900

seq1  ACCTGAGACTGCATAGATAAAATTGAGGAAAATTGAAAAGCATTATATTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGACTGCATAGATAAAATTGAGGAAAATTGAAAAGCATTATATTA  950

seq1  TTTGAAGTAAGTCAGACTAAGCAAGACAAATTCTACATGATGTCACCTAC  1000
      |||||||||||||||||||||||||| ||||  |||||||||||||||||
seq2  TTTGAAGTAAGTCAGACTAAGCAAGAAAAATCTTACATGATGTCACCTAC  1000

seq1  ATTAGAAATTCGAGAC-TGCTGATACTTAACTATAGAATAGAATGG-TAG  1048
      | |||||||||||||| || |||||||| ||||||||||||||||| |||
seq2  A-TAGAAATTCGAGACTTGTTGATACTT-ACTATAGAATAGAATGGTTAG  1048

seq1  -TTGACAGAAATTGATTG-ATATGGAAAGGT-GACTGGGGTTTACTAGTA  1095
       ||||| ||| ||||||| ||  |||||||| |||||||| |||||||||
seq2  TTTGACGGAATTTGATTGAATTGGGAAAGGTGGACTGGGG-TTACTAGTA  1097

seq1  AAGTATTATAAAATTTAATTTTCATTTTACTATTTGAGATTTTTTTATA  1144
      |||  ||||||||||    ||||||||||| |  ||||| |||||||||
seq2  AAGATTTATAAAATT---ATTTCATTTTAC-AAGTGAGAATTTTTTATA  1142