BAC Information

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BAC

Clone NameB6Ng01-006B17
Chromosome3 (Build37)
Map Location 106,346,618 - 106,347,732
singlet/doubletsinglet
Overlap geneCept1
Upstream geneKcnd3, Ddx20, 6530418L21Rik, Rap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d
Downstream geneTmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266, Kcna3, AI504432, Kcna2, Kcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006B17.bB6Ng01-006B17.g
ACCDH843059DH843060
length9241,113
definitionDH843059|Mus musculus domesticus DNA, BAC clone: B6Ng01-006B17, 5' end.DH843060|Mus musculus domesticus DNA, BAC clone: B6Ng01-006B17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttggtggaatttttagaatcacttatatacgatcatatcatct
tcaaatagtgatattttgacttcctcctttccaatttgtatccccttgac
ctcattttgttgtctaattgctctggcttggactttaaatactatattga
atagtgagggagaaagtgtccagccttgtctagtctgtgattttagtggg
attgcttccagtttctctccatttagtttgatgttggctactggtttgct
gtatattgcttttattatgttcaggtatgggccttgaatttcagatcttt
tcaagacttttatcatcaatgggtgttagattttgtcaaatgttttctca
gcatctaatgagatgatcgtgtgatttttgtctttgagtttgtttatata
gtggattacattgatggatttccgtatagtaaaccatccctgcatccctg
ggatgaagcctacttggtcatgatggatgatcgttttgttgtgttcttgg
attcggtttgtgaggattttattgagtatttttgcatttatattcataag
ggaaattggtctgaagttctctttattgttgggtctttgtgtggtttagg
tatcagagtaattgaagcttcatagaatgaattggggtagagtaccttct
gtttctattttgtggaatagcttgaggagagttggaattaggtcttcttt
gaaggtcccatagaactctgcactaaacccatctggtcctggactttttt
tggttgggagactattaatgatggcttctatttctttagggggaatgaga
ctgttaagattattatctgatcctgatttaactttggtaccttgttactg
tctaggaagttgtccatttcatccaggttctccaagtttgttgagtatac
ttttgtagtaggatttgatgatgt
gaattcctcttgaaagagaaataaaagttgagctggttccatttttattg
tgttggctcaatctgttccatcctcacattgtttgttattttgttaaagg
cagtacacagagggcactagcctattttagctgatagctacaagcagctg
atcctaatggttttaagtttaagtatttggcaggacgagctgacaaactg
atactttccttttaagattttcccctcatgacctaatttctcttaacctt
ttatgggttcattagaaaaatacattgttgagaatttgtttctgacctag
ccattatgtcaaccatacatttttaaaaggtaatgagttttttgaacatt
tcaatctagcaactttgtctctctgtacagcttccagtaacagcactgta
aatgtgaattcaggcgcaagtatcccagacacactgatgactgctttact
ttcaacctatgccaacagtcagaagttgctgacactgttccaggtcatct
ccacctttccttcttcaaccccatgggagagcacccagtgctaatgggaa
aacaactacagaccatgggtatctgaattttaccaaaggaaagctaacgt
acaccaaaggagcagcaaatgggagcttagaagaggaagaataaagagtg
tgagaatggaagtttggaagacattacaaatattgtgtgtggtcaggcct
atgtccaacaaggtaggcagaaaatcgttccttactacagaagaaattaa
aatcataaaaaaataaaagttaaaaataacccagcaaagtaaaagttatt
gctgattgcctagaaacacacgagtcaaggtactgtttatgaaaggaaag
ttctaagtgtcaaatgtgcctactatacaagacaggcatggtcaggttcc
cacacccagcagtactaaagcccagtgagcaagcagtaacatcacacacg
gcatgacacacactatacagaaaataaagtgctgagacagaaaagagttg
aaagaatgcattttgattcgggtggaagtcatcaaacttttctacccatt
tcagaagaaaaagagtaaacgcggtagtaagagcaggatataagaataat
ccagaagcagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_106346618_106347732
seq2: B6Ng01-006B17.g_67_1179

seq1  GAATTCCTCTTGAAAGAGAAATAAAAGTTGAGCTGGTTCCATTTTTATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTGAAAGAGAAATAAAAGTTGAGCTGGTTCCATTTTTATTG  50

seq1  TGTTGGCTCAATCTGTTCCATCCTCACATTGTTTGTTATTTTGTTAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCTCAATCTGTTCCATCCTCACATTGTTTGTTATTTTGTTAAAGG  100

seq1  CAGTACACAGAGGGCACTAGCCTATTTTAGCTGATAGCTACAAGCAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACACAGAGGGCACTAGCCTATTTTAGCTGATAGCTACAAGCAGCTG  150

seq1  ATCCTAATGGTTTTAAGTTTAAGTATTTGGCAGGACGAGCTGACAAACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAATGGTTTTAAGTTTAAGTATTTGGCAGGACGAGCTGACAAACTG  200

seq1  ATACTTTCCTTTTAAGATTTTCCCCTCATGACCTAATTTCTCTTAACCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTCCTTTTAAGATTTTCCCCTCATGACCTAATTTCTCTTAACCTT  250

seq1  TTATGGGTTCATTAGAAAAATACATTGTTGAGAATTTGTTTCTGACCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGTTCATTAGAAAAATACATTGTTGAGAATTTGTTTCTGACCTAG  300

seq1  CCATTATGTCAACCATACATTTTTAAAAGGTAATGAGTTTTTTGAACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATGTCAACCATACATTTTTAAAAGGTAATGAGTTTTTTGAACATT  350

seq1  TCAATCTAGCAACTTTGTCTCTCTGTACAGCTTCCAGTAACAGCACTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTAGCAACTTTGTCTCTCTGTACAGCTTCCAGTAACAGCACTGTA  400

seq1  AATGTGAATTCAGGCGCAAGTATCCCAGACACACTGATGACTGCTTTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAATTCAGGCGCAAGTATCCCAGACACACTGATGACTGCTTTACT  450

seq1  TTCAACCTATGCCAACAGTCAGAAGTTGCTGACACTGTTCCAGGTCATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACCTATGCCAACAGTCAGAAGTTGCTGACACTGTTCCAGGTCATCT  500

seq1  CCACCTTTCCTTCTTCAACCCCATGGGAGAGCACCCAGTGCTAATGGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTTCCTTCTTCAACCCCATGGGAGAGCACCCAGTGCTAATGGGAA  550

seq1  AACAACTACAGACCATGGGTATCTGAATTTTACCAAAGGAAAGCTAACGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTACAGACCATGGGTATCTGAATTTTACCAAAGGAAAGCTAACGT  600

seq1  ACACCAAAGGAGCAGCAAATGGGAGCTTAGAAGAGGAAGAATAAAGAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAAAGGAGCAGCAAATGGGAGCTTAGAAGAGGAAGAATAAAGAGTG  650

seq1  TGAGAATGGAAGTTTGGAAGACATTACAAATATTGTGTGTGGTCAGGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATGGAAGTTTGGAAGACATTACAAATATTGTGTGTGGTCAGGCCT  700

seq1  ATGTCCAACAAGGTAGGCAGAAAATCGTTCCTTACTACAGAAGAAATTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCAACAAGGTAGGCAGAAAATCGTTCCTTACTACAGAAGAAATTAA  750

seq1  AATCATAAAAAAATAAAAGTTAAAAATAACCCAGCAAAGTAAAAGTTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATAAAAAAATAAAAGTTAAAAATAACCCAGCAAAGTAAAAGTTATT  800

seq1  GCTGATTGCCTAGAAACACACGAGTCAAGGTACTGTTTATGAAAGGAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATTGCCTAGAAACACACGAGTCAAGGTACTGTTTATGAAAGGAAAG  850

seq1  TTCTAAGTGTCAAATGTGCCTACTATACAAGACAGGCATGGTCAGGTTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGTGTCAAATGTGCCTACTATACAAGACAGGCATGGTCAGGTTCC  900

seq1  CACACCCAGCAGGTACTAAAGCCCAGTGAGCAAGCAGTAACATCACACCA  950
      ||||||||||| ||||||||||||||||||||||||||||||||||| ||
seq2  CACACCCAGCA-GTACTAAAGCCCAGTGAGCAAGCAGTAACATCACA-CA  948

seq1  CGGCATGACACACACTATACAGAAAATAAAGTGCTGAGACAGAAAAGAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCATGACACACACTATACAGAAAATAAAGTGCTGAGACAGAAAAGAGT  998

seq1  TGAAAGAATGCATTTTGAATAGGGGTGGAAGTCATCAAACTTTTCTACCC  1050
      ||||||||||||||||| ||  ||||||||||||||||||||||||||||
seq2  TGAAAGAATGCATTTTG-ATTCGGGTGGAAGTCATCAAACTTTTCTACCC  1047

seq1  ATTTCAGAAG-AAAAGAGTAAACGCGGTAGTAAGAGCAGGATA-AAGAAT  1098
      |||||||||| |||||||||||||||||||||||||||||||| ||||||
seq2  ATTTCAGAAGAAAAAGAGTAAACGCGGTAGTAAGAGCAGGATATAAGAAT  1097

seq1  AGTCCAAGAAGCAGAGA  1115
      | ||| |||||||||||
seq2  AATCC-AGAAGCAGAGA  1113