BAC Information

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BAC

Clone NameB6Ng01-006C04
Chromosome3 (Build37)
Map Location 125,049,866 - 125,170,360
singlet/doubletdoublet
Overlap geneNdst4
Upstream geneLOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817, LOC668820
Downstream geneUgt8a, Arsj
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006C04.bB6Ng01-006C04.g
ACCDH843080DH843081
length1,170683
definitionDH843080|Mus musculus domesticus DNA, BAC clone: B6Ng01-006C04, 5' end.DH843081|Mus musculus domesticus DNA, BAC clone: B6Ng01-006C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,049,866 - 125,051,053)(125,169,757 - 125,170,360)
sequence
gaattcattatgacacaggatgctaaaaaatgtggtgaacagtcagaatg
tttttgaagaggaggtgaaataacccatccttcaggaaagccccttaaac
tcaggaagtaaaaactcaaagtcatcaggaagtccctgaaactgtccagg
catatgaagcccctccctcctcaagcacatttaagcaggaagacatgcaa
gacacccgaaaacgacagaaactagttgtactgtctagaagcatcccaga
taaggtgaactgcctagaagagggtcataccagctgaggaacctggatga
aacagaggacttgggctgcctagcagaggcaaaggggaatagagctacct
gaaagactcagaccatcctctctccccgaagaagacactttttatcctgt
ctagtttgttgcaaattgtttaccgagcttacatttttccaaaagatttc
atgagccataacccattgaggagtgttttagtggtagagctgtctttgag
ttatttctgttcttcgaagtagccaacaccagatctataagcagaaacac
ttgctggttcactaagttggattttgggacacccttagtttactgtcatt
ggttctctatctggggaccaggagacatttctgcttgtctcccaagaaac
agtgtcacacaacaccccttttatcaccattgtcttttacagtgtaaaat
atattcaataaataaatagttacataaatttaaagccttcagcaaaagca
cattttaaataatgttctaaattttcttccccaactgcttcttcctttct
gtcatattttgacaatattgatgttcaatagttaacacaattcagtaaat
attagataaatattacatgatatttttccaggataataaacatttcttta
ttaaaaatatttaaaggagtagtaattagataatttggggggaaaatacc
tgaaagaaaatgaacaatgtctttcagagctaaaggatagaaatgtcctt
caacttttgtcagccctgtctttgtcagaggccaggaaatctaaacaatt
cctaacttggttcagcatgatttagataggttcttcaagaaagaatgtta
gggtagcgattctgaactcagtagaaagactctggtgaaagatagaattt
tgtgtggcgagacctaacac
gaattccactgtactcatcgacactgataggactgatgtgaactctgact
ttcagtccctcttcatttaaagtctctttctccacccttgcccacccatg
cacccccatttcctttttccacggttttttttttttttaaatcccattgt
tgctatgagcctgacctaacctttcaaacttttttgttctgaagcctcta
acttctgaacagtcacacattcaatagagtgtgcttggattgctgcccat
tactctctcacatttagtgtgcttcaatatcacgaagggagttctcttcc
ccctccctccctctttcttctccctcttccctctgtctctcaccctctct
ccctccctctcttccctctgcctctcaccctctctccctccctctcttcc
ctctgcctctcaccctctctccctctctccctctctctctccctctgctt
cttttccttcctctctttcatacccacacacacacacacgcacacacaca
caggcacacatatacatacatatataaaacacatataatgtacatatatg
tacacacatacaaatatacacataattgtgtgtgtgtgtgtgtgtgtgtg
tgtgctcttccttgggagaagactgtctctcgcactctcaacactggtta
atgtaatatagttcgatgtatagggatgaggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_125049866_125051053
seq2: B6Ng01-006C04.b_45_1214

seq1  GAATTCATTATGACACAGGATGCTAAAAAATGTGGTGAACAGTCAGAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATGACACAGGATGCTAAAAAATGTGGTGAACAGTCAGAATG  50

seq1  TTTTTGAAGAGGAGGTGAAATAACCCATCCTTCAGGAAAGCCCCTTAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAAGAGGAGGTGAAATAACCCATCCTTCAGGAAAGCCCCTTAAAC  100

seq1  TCAGGAAGTAAAAACTCAAAGTCATCAGGAAGTCCCTGAAACTGTCCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAGTAAAAACTCAAAGTCATCAGGAAGTCCCTGAAACTGTCCAGG  150

seq1  CATATGAAGCCCCTCCCTCCTCAAGCACATTTAAGCAGGAAGACATGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGAAGCCCCTCCCTCCTCAAGCACATTTAAGCAGGAAGACATGCAA  200

seq1  GACACCCGAAAACGACAGAAACTAGTTGTACTGTCTAGAAGCATCCCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCCGAAAACGACAGAAACTAGTTGTACTGTCTAGAAGCATCCCAGA  250

seq1  TAAGGTGAACTGCCTAGAAGAGGGTCATACCAGCTGAGGAACCTGGATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGAACTGCCTAGAAGAGGGTCATACCAGCTGAGGAACCTGGATGA  300

seq1  AACAGAGGACTTGGGCTGCCTAGCAGAGGCAAAGGGGAATAGAGCTACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGGACTTGGGCTGCCTAGCAGAGGCAAAGGGGAATAGAGCTACCT  350

seq1  GAAAGACTCAGACCATCCTCTCTCCCCGAAGAAGACACTTTTTATCCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACTCAGACCATCCTCTCTCCCCGAAGAAGACACTTTTTATCCTGT  400

seq1  CTAGTTTGTTGCAAATTGTTTACCGAGCTTACATTTTTCCAAAAGATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTGTTGCAAATTGTTTACCGAGCTTACATTTTTCCAAAAGATTTC  450

seq1  ATGAGCCATAACCCATTGAGGAGTGTTTTAGTGGTAGAGCTGTCTTTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCCATAACCCATTGAGGAGTGTTTTAGTGGTAGAGCTGTCTTTGAG  500

seq1  TTATTTCTGTTCTTCGAAGTAGCCAACACCAGATCTATAAGCAGAAACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTGTTCTTCGAAGTAGCCAACACCAGATCTATAAGCAGAAACAC  550

seq1  TTGCTGGTTCACTAAGTTGGATTTTGGGACACCCTTAGTTTACTGTCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGTTCACTAAGTTGGATTTTGGGACACCCTTAGTTTACTGTCATT  600

seq1  GGTTCTCTATCTGGGGACCAGGAGACATTTCTGCTTGTCTCCCAAGAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCTATCTGGGGACCAGGAGACATTTCTGCTTGTCTCCCAAGAAAC  650

seq1  AGTGTCACACAACACCCCTTTTATCACCATTGTCTTTTACAGTGTAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCACACAACACCCCTTTTATCACCATTGTCTTTTACAGTGTAAAAT  700

seq1  ATATTCAATAAATAAATAGTTACATAAATTTAAAGCCTTCAGCAAAAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAATAAATAAATAGTTACATAAATTTAAAGCCTTCAGCAAAAGCA  750

seq1  CATTTTAAATAATGTTCTAAATTTTCTTCCCCAACTGCTTCTTCCTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAAATAATGTTCTAAATTTTCTTCCCCAACTGCTTCTTCCTTTCT  800

seq1  GTCATATTTTGACAATATTGATGTTCAATAGTTAACACAATTCAGTAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATTTTGACAATATTGATGTTCAATAGTTAACACAATTCAGTAAAT  850

seq1  ATTAGATAAATATTACATGATATTTTTCCAGGATAATAAACATTTCTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATAAATATTACATGATATTTTTCCAGGATAATAAACATTTCTTTA  900

seq1  TTAAAAATATTTAAAGGAGGTAGTAATTAGATAATTT-GGGGGAAAATAC  949
      |||||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  TTAAAAATATTTAAAGGA-GTAGTAATTAGATAATTTGGGGGGAAAATAC  949

seq1  CTGAAAGAAAAATGAACAATGTCTTTCAGAGCTAAAGGATAGAAATGTCC  999
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAG-AAAATGAACAATGTCTTTCAGAGCTAAAGGATAGAAATGTCC  998

seq1  TTCAACTTTTTGTCAGCCCTGTCTTTGTCAGAGGCCAGAAATTCCAAAAC  1049
      |||||| ||||||||||||||||||||||||||||||| || | | ||||
seq2  TTCAAC-TTTTGTCAGCCCTGTCTTTGTCAGAGGCCAGGAAAT-CTAAAC  1046

seq1  AATTCCCTAACCTGGTTCCAGCATGATTTTAGGATAAGTTCTTCAGAGAC  1099
      |||| |||||| ||||| |||||||||||   |||| |||||||| ||| 
seq2  AATT-CCTAACTTGGTT-CAGCATGATTT--AGATAGGTTCTTCA-AGAA  1091

seq1  AGGGAATGTTAGGGTAGCAGATCTG-ACTCAGTAAAGAAAAGAGCTCTGG  1148
      |  |||||||||||||||   |||| ||||||||    ||||| ||||||
seq2  A--GAATGTTAGGGTAGCGATTCTGAACTCAGTA---GAAAGA-CTCTGG  1135

seq1  TGAAAAGAATAGAATATTTGTGTGGGCAGAGACCTAACAC  1188
      |||||   ||||||| |||||||||   ||||||||||||
seq2  TGAAA--GATAGAAT-TTTGTGTGG--CGAGACCTAACAC  1170

seq1: chr3_125169757_125170360
seq2: B6Ng01-006C04.g_66_669 (reverse)

seq1  CACACACACACACACACACACACACACACTTATGTGTATATTTGTATGTG  50
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CACACACACACACACACACACACACACAATTATGTGTATATTTGTATGTG  50

seq1  TGTACATATATGTACATTATATGTGTTTTATATATGTATGTATATGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATATATGTACATTATATGTGTTTTATATATGTATGTATATGTGTG  100

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGAAAGAGAGGAAGGA  150
        |||||||||||| ||||||||||||||| |||||||||||||||||||
seq2  CCTGTGTGTGTGTGCGTGTGTGTGTGTGTGGGTATGAAAGAGAGGAAGGA  150

seq1  AAAGAAGCAGAGGGAGAGAGAGAGGGAGAGAGGGAGAGAGGGTGAGAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGCAGAGGGAGAGAGAGAGGGAGAGAGGGAGAGAGGGTGAGAGGC  200

seq1  AGAGGGAAGAGAGGGAGGGAGAGAGGGTGAGAGGCAGAGGGAAGAGAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAAGAGAGGGAGGGAGAGAGGGTGAGAGGCAGAGGGAAGAGAGGG  250

seq1  AGGGAGAGAGGGTGAGAGACAGAGGGAAGAGGGAGAAGAAAGAGGGAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAGAGGGTGAGAGACAGAGGGAAGAGGGAGAAGAAAGAGGGAGGG  300

seq1  AGGGGGAAGAGAACTCCCTTCGTGATATTGAAGCACACTAAATGTGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGAAGAGAACTCCCTTCGTGATATTGAAGCACACTAAATGTGAGAG  350

seq1  AGTAATGGGCAGCAATCCAAGCACACTCTATTGAATGTGTGACTGTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGGGCAGCAATCCAAGCACACTCTATTGAATGTGTGACTGTTCAG  400

seq1  AAGTTAGAGGCTTCAGAACAAAAAAGTTTGAAAGGTTAGGTCAGGCTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGAGGCTTCAGAACAAAAAAGTTTGAAAGGTTAGGTCAGGCTCAT  450

seq1  AGCAACAATGGGATTTAAAAAAAAAAAAAACCGTGGAAAAAGGAAATGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAATGGGATTTAAAAAAAAAAAAAACCGTGGAAAAAGGAAATGGG  500

seq1  GGTGCATGGGTGGGCAAGGGTGGAGAAAGAGACTTTAAATGAAGAGGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCATGGGTGGGCAAGGGTGGAGAAAGAGACTTTAAATGAAGAGGGAC  550

seq1  TGAAAGTCAGAGTTCACATCAGTCCTATCAGTGTCGATGAGTACAGTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTCAGAGTTCACATCAGTCCTATCAGTGTCGATGAGTACAGTGGA  600

seq1  ATTC  604
      ||||
seq2  ATTC  604