BAC Information

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BAC

Clone NameB6Ng01-006C18
Chromosome15 (Build37)3 (Build37)
Map Location 13,331,380 - 13,331,80870,816,687 - 70,817,422
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePdzd2, LOC100040109, 6030458C11Rik, Rnasen, Cdh6, LOC100039907
Downstream geneLOC666686, LOC239338, LOC666708
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006C18.bB6Ng01-006C18.g
ACCDH843106DH843107
length803739
definitionDH843106|Mus musculus domesticus DNA, BAC clone: B6Ng01-006C18, 5' end.DH843107|Mus musculus domesticus DNA, BAC clone: B6Ng01-006C18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(13,331,380 - 13,331,808)(70,816,687 - 70,817,422)
sequence
gaattcagttagaattttgatggggattgcattaaatctgtagattgcat
ttggcaagattgccatttttactatattgttcctgccaatccatgatcat
ggaaatctttccatcttctgagatctttaatttctttcttcagagacttg
aagttcttatcatacagatctttcacttcctcagttagagtcacaccgag
gtattttatattatttgtaactattgataaggctgttgtttcccaaattt
ctttctcagcctgtttatcttttgtgtagagaaaggccattaacttgttt
gtgttaattttatatctggctacttctttgaagctgttcatcatgtttag
gcattctttggtggaattttaagggtcacttatatatactatcttaccat
ccacaaaaaatgatattttaacttcttcctttccaatttatatccccttg
atctcctttagttgtcaaattgctctggctaggactttaagtacaatgtt
gaataggtagagagaaagtatgcagccttgtctagtttctgattttagta
ggaatccttccagcttctcaccatttatattaatgctggctactggtttg
ctgtagattgcttttttcatgtttaagtatgggccttgaattcctgatct
ttctaagacttttatcatgaatgggtgttggatttttgtcaaatgatatc
tcagcatctaacgagatgatcatgtggttttttgtctttgagtttgttta
tatactggatcacgtttgatggatttccttaaattgaaccatccctgcat
ccc
gaattcagtggagtgttttagaagaaagacatttatttcatgtttgaagc
aaacataatttctttaaatgaggaaaatatcgcaagcaggttcaacattg
ctgtctttctctaacacatactccctcactcatatagatggcattttaaa
cacctgctgtttttaaatgatgctattatcattaacagttaaatctgggg
atggcatagcttttattgccctctgttgtcaaatagtccacctgttttta
attagataagtcatcgatggcttcatattgcatgccatttggagttatga
atgacaggttctatagaagaacttttacttcgttgattttttttgttgtt
gttttcccttataactattccaaactttgagataagatagagtttcctat
atgaccctcaacttttatatctcctttgataatctgagaaaatatttaaa
gcacagtacacttaacaatagcaaaccaagttgcttatgcgattaattta
aatattgttttatagatttttgcctcaaaataaatataaaaataaccaaa
atttcaactaaactcctagtgagagaaaactaacttttttcaaacaattt
attttctcctgatatccaattgtgatatccacaagtttaatatgctgata
taaatttgtttgctttttaatgtaaatttttttgctttgatgtgtttaaa
agcacatcaagttctttggtaatttaattttcactttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_13331380_13331808
seq2: B6Ng01-006C18.b_412_843 (reverse)

seq1  GGGATGCAGGGATGGTTCAATATACGGAAATCCAT-TAATGTAATCCAGT  49
      ||||||||||||||||||||| || ||||||||||  || || |||||||
seq2  GGGATGCAGGGATGGTTCAATTTAAGGAAATCCATCAAACGTGATCCAGT  50

seq1  ATGTAAACAAACTCAAAGAC-AAAAACCACATGATTATCTCGTTAGATGC  98
      || ||||||||||||||||| |||||||||||||| ||||||||||||||
seq2  ATATAAACAAACTCAAAGACAAAAAACCACATGATCATCTCGTTAGATGC  100

seq1  AGAGAAAGCATTTGAC-AAAATCCAACACCCATTCATGATAAAAGTCTTG  147
       |||| | |||||||| |||||||||||||||||||||||||||||||| 
seq2  TGAGATATCATTTGACAAAAATCCAACACCCATTCATGATAAAAGTCTTA  150

seq1  GAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTA  197
      ||||||||||||||||||||||||||| ||||||||| ||||||||||||
seq2  GAAAGATCAGGAATTCAAGGCCCATACTTAAACATGAAAAAAGCAATCTA  200

seq1  TAGCAAACCAGTAGCCAACATCAAAATAAATGGTGAGAAGCTGGAAGCAA  247
       |||||||||||||||| ||| || |||||||||||||||||||||| | 
seq2  CAGCAAACCAGTAGCCAGCATTAATATAAATGGTGAGAAGCTGGAAGGAT  250

seq1  TCCCACTAAAATCAGGGACTAGACAAGGCTGTCTACTCTCGCCCTACCTA  297
      ||| |||||||||||  ||||||||||||||  |||| || | |||||||
seq2  TCCTACTAAAATCAGAAACTAGACAAGGCTGCATACTTTCTCTCTACCTA  300

seq1  TTCAACATTGTACTTGAAGTCCTAGCCAGAGCAATTAGACAACAAAAGGA  347
      ||||||||||||||| |||||||||||||||||||| |||||| ||||||
seq2  TTCAACATTGTACTTAAAGTCCTAGCCAGAGCAATTTGACAACTAAAGGA  350

seq1  GATCAAGGGGATACAAATTGGAAAGGAAGAAGTAAAAATATCACTTTTTG  397
      ||||||||||||| ||||||||||||||||||| ||||||||| ||||||
seq2  GATCAAGGGGATATAAATTGGAAAGGAAGAAGTTAAAATATCATTTTTTG  400

seq1  CAGATGATATGATAGTATATATAAGTGACCCT  429
        |||| || ||||||||||||||||||||||
seq2  TGGATGGTAAGATAGTATATATAAGTGACCCT  432

seq1: chr3_70816687_70817422
seq2: B6Ng01-006C18.g_67_805

seq1  GAATTCAGTGGAGTGTTTTAGAAGAAAGACATTTATTTCATGTTTGAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGAGTGTTTTAGAAGAAAGACATTTATTTCATGTTTGAAGC  50

seq1  AAACATAATTTCTTTAAATGAGGAAAATATCGCAAGCAGGTTCAACATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAATTTCTTTAAATGAGGAAAATATCGCAAGCAGGTTCAACATTG  100

seq1  CTGTCTTTCTCTAACACATACTCCCTCACTCATATAGATGGCATTTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTCTCTAACACATACTCCCTCACTCATATAGATGGCATTTTAAA  150

seq1  CACCTGCTGTTTTTAAATGATGCTATTATCATTAACAGTTAAATCTGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCTGTTTTTAAATGATGCTATTATCATTAACAGTTAAATCTGGGG  200

seq1  ATGGCATAGCTTTTATTGCCCTCTGTTGTCAAATAGTCCACCTGTTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATAGCTTTTATTGCCCTCTGTTGTCAAATAGTCCACCTGTTTTTA  250

seq1  ATTAGATAAGTCATCGATGGCTTCATATTGCATGCCATTTGGAGTTATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATAAGTCATCGATGGCTTCATATTGCATGCCATTTGGAGTTATGA  300

seq1  ATGACAGGTTCTATAGAAGAACTTTTACTTCGTTGATTTTTTTTGTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGGTTCTATAGAAGAACTTTTACTTCGTTGATTTTTTTTGTTGTT  350

seq1  GTTTTCCCTTATAACTATTCCAAACTTTGAGATAAGATAGAGTTTCCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCCTTATAACTATTCCAAACTTTGAGATAAGATAGAGTTTCCTAT  400

seq1  ATGACCCTCAACTTTTATATCTCCTTTGATAATCTGAGAAAATATTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCCTCAACTTTTATATCTCCTTTGATAATCTGAGAAAATATTTAAA  450

seq1  GCACAGTACACTTAACAATAGCAAACCAAGTTGCTTATGCGATTAATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTACACTTAACAATAGCAAACCAAGTTGCTTATGCGATTAATTTA  500

seq1  AATATTGTTTTATAGATTTTTGCCTCAAAATAAATATAAAAATAACCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGTTTTATAGATTTTTGCCTCAAAATAAATATAAAAATAACCAAA  550

seq1  ATTTCAACTAAACTCCTAGTGAGAGAAAACTAACTTTTTTCAAACAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAACTAAACTCCTAGTGAGAGAAAACTAACTTTTTTCAAACAATTT  600

seq1  A-TTTCTCCTGATATCCAATTGTGATATCCACAAGTTTAATATGCTGATA  649
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCCTGATATCCAATTGTGATATCCACAAGTTTAATATGCTGATA  650

seq1  TAAATTTGTTTGC-TTTTAATGTAAATTTGTTTTGCTTTGATGTGTTTAA  698
      ||||||||||||| ||||||||||||||| ||||||||||||||||||||
seq2  TAAATTTGTTTGCTTTTTAATGTAAATTT-TTTTGCTTTGATGTGTTTAA  699

seq1  AAGCACATCAAGTTC-TTGGTTATTTAA-TTTCACTTTCT  736
      ||||||||||||||| ||||| |||||| |||||||||||
seq2  AAGCACATCAAGTTCTTTGGTAATTTAATTTTCACTTTCT  739