BAC Information

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BAC

Clone NameB6Ng01-006F18
Chromosome3 (Build37)
Map Location 15,469,055 - 15,470,130
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc7a12, LOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13, EG545507, Car1, LOC100041785, Car3, Car2, EG634323, LOC100039985, LOC751864, Sirpb1
Downstream geneLOC668101, LOC100038947, LOC622425, LOC664795, LOC381484, Ythdf3, LOC100040034
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006F18.bB6Ng01-006F18.g
ACCDH843242DH843243
length1,2211,051
definitionDH843242|Mus musculus domesticus DNA, BAC clone: B6Ng01-006F18, 5' end.DH843243|Mus musculus domesticus DNA, BAC clone: B6Ng01-006F18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtctgaatcagtatcacatttttaaatggatcatttggtttat
ttgatgtcatgaagaaaataacaccaactctttctgtatatatccaataa
aatattttaatttttagttgattcaagaagacaactaaaggaaatcaagg
gtatacaaactggaaaagaagaagacaagttttgctatttgttgatggta
tgattagtatacataagcaactaccaaaactctaccagggaactcctaaa
gctgataaatatcttcagaaaagttgctggataaaacattaaatcaaaaa
tatcagcagccgtcctatatataaatgataaatgtattgagaaagaaatt
agagaaataacacctcttgcgatagccacagataatataaaatatccttg
ggtaactctaaccaagcaaataaaagacctgtgtgacaagaacttcaagt
ttctgtaggaaaaaattaaagaggatatcaaaagttgaaaaatctctcat
gctcatggattgtagaattaacatagtaaaaatgcccatcgtacaagaac
caatctacacattcaatacaattcccaggagaatttccagacaactcttt
acaaatcttgaaaatatgatatctgacttcaagtggaaaaacaaaaacag
tagtttaaccaattctctacaatagcaagaaaaaaaaaaaacctagggag
gtattaacatttgtgattttaagttctaccacagagatcagtctggcagt
tcctcaaaaagttggacatagtactacaggaagatccagcaatatctctc
ctgggtatatacccagatgttccaaaatgtaataaggacacatgcttcac
tgtgttcatagcagctttatttagaagctggaaagaacccagatgtccct
caacaaaggaatagatacagaaaatgtggtacatttacacaatggagtac
tacacaggtataaaaacaatgcatttatgaaattctaggcaaatggatgg
atctgaggatatcatcctgagtgagtactcaatcacaaaagaactcatat
aatatgcactctctgataagtagaatataatctagaactagaataccaag
aatacatttgcgaaacatgactcagaagaaagaagacacttgaatcgtct
ctgaattgacaatccatgagattcagatcagttgaactgatgagaaagcc
accagacgtcctcacttggga
gaattctttgttcagctctgatccccattttttaatggggttattcgatt
ttctggagcccaccttcttgagttctttatatatattggatattagttcc
ctatccgatttgggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgtcggtgtcttttgccttgcagaagctttgcaatttta
tgaggtcccatttatcgattctcgacattacagcacaagccattgctgtt
ctattcaggaatttttcccctgtacccaaatctttgaggctttcccctac
cttctcctctatattttcttattatcctgttcatttggttgaatagggtg
tgattcagatagaaaattgctataacttgtcctatccacaaaagaagctc
agacttgaatttaggacagccaatttaagaattcttctcatatgcttccc
ttcatttgttctttctttcttctcttttggagtgaaggattgaaatcatt
tcctcacatttgttaatttcatgctcactattaagttactaacccagccc
tatttccaccatcatttcttctttgtagctacagtaagctattaggattt
ttggtaataagttaagtagagaaagaataaaaatacatcaaagcagacag
aaataaccaaccacccctttgcatctctatgataaattataatggccaac
tgtttaaaaggaaaaaaagtctttcttagctcctgctgctgaccacatga
cttatgactttatgagacacagacacagtcagatgtgcagtttacttatt
ttcaaggagattttcattaaaactaatttcaaaaccagtaatccctatta
ggtgacagcagtcaaaactctttattctcacctcataaaatactgtgttg
ctttctcttgctgcatataatttgccaagatttctattctaaaatttcat
gtccttaaaatgatcttattgaatagattatatatatagcacctttccat
attatatattacatacacaattgtgctttatagttgtgcatcatgtacac
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_15469055_15470130
seq2: B6Ng01-006F18.g_66_1116

seq1  GAATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTCGATT  50
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGCTCTGATCCCCATTTTTTAATGGGGTTATTCGATT  50

seq1  TTCTGGAGCCCACCTTCTTGAGCTCTTTATATATATTGGATATTAGTCCC  100
      |||||||||||||||||||||| |||||||||||||||||||||||| ||
seq2  TTCTGGAGCCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTTCC  100

seq1  CTATCCGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150

seq1  TTTTGTCTTATTGACAGTGTTTTTTGCCTTGCAGAAGCTTTGCAATTTTA  200
      ||||||||||||| | |||| |||||||||||||||||||||||||||||
seq2  TTTTGTCTTATTGTCGGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTA  200

seq1  TGAGGTCCCATTTATCGATTCTCGACCTTACAGCACAAGCCATTGCTGTT  250
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGAGGTCCCATTTATCGATTCTCGACATTACAGCACAAGCCATTGCTGTT  250

seq1  CTATTCAGGAATATTTCCCCTGTACCCAAATCTTTGAGGCTTTCCCCTAC  300
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTATTCAGGAATTTTTCCCCTGTACCCAAATCTTTGAGGCTTTCCCCTAC  300

seq1  TTTCTCCTCTATATTTTCTTATTATCCTGTTCATTTGGTTGAATAGGGTT  350
       |||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTTCTCCTCTATATTTTCTTATTATCCTGTTCATTTGGTTGAATAGGGTG  350

seq1  TGATTCAGATAGAAAATTGCTATAACTTGTCCTATCCACAAAAGAAGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCAGATAGAAAATTGCTATAACTTGTCCTATCCACAAAAGAAGCTC  400

seq1  AGACTTGAATTTAGGACAGCCAATTTAAGAATTCTTCTCATATGCTTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGACTTGAATTTAGGACAGCCAATTTAAGAATTCTTCTCATATGCTTCCC  450

seq1  TTCATTTGTTCTTTCTTTCTTCTCTTTTGGAGTGAAGGATTGAAATCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTGTTCTTTCTTTCTTCTCTTTTGGAGTGAAGGATTGAAATCATT  500

seq1  TCCTCACATTTGTTAATTTCATGCTCACTATTAAGTTACTAACCCAGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACATTTGTTAATTTCATGCTCACTATTAAGTTACTAACCCAGCCC  550

seq1  TATTTCCACCATCATTTCTTCATTGTAGCTACAGTAAGTTATTAGGATTT  600
      ||||||||||||||||||||| |||||||||||||||| |||||||||||
seq2  TATTTCCACCATCATTTCTTCTTTGTAGCTACAGTAAGCTATTAGGATTT  600

seq1  TTGGTAATATGTTAAGTAGAGAAAGAATAAAAATACATCAAAGCAGACAG  650
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAATAAGTTAAGTAGAGAAAGAATAAAAATACATCAAAGCAGACAG  650

seq1  AAATAACCAACCACCCCTTTGCATCTCTATGATAAATTATAATGGCCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACCAACCACCCCTTTGCATCTCTATGATAAATTATAATGGCCAAC  700

seq1  TGTTTAAAAGGAAAAAAAGTCTTTCTTAGCTCCTGCTGCTGACCACATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAAAGGAAAAAAAGTCTTTCTTAGCTCCTGCTGCTGACCACATGA  750

seq1  CTTATGACTTTATGAGACACAGACACAGTCAGATGTGCAGTTTACTTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGACTTTATGAGACACAGACACAGTCAGATGTGCAGTTTACTTATT  800

seq1  TCCAAGGAGATTTTCATTAAAACTAATTTCAAAACCAGTAATCCCTATTA  850
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGAGATTTTCATTAAAACTAATTTCAAAACCAGTAATCCCTATTA  850

seq1  GGTGACAGCAGTCAAAACTCTTTATTCTCACCTCAT-AAATAATGTGTTG  899
      |||||||||||||||||||||||||||||||||||| ||||| |||||||
seq2  GGTGACAGCAGTCAAAACTCTTTATTCTCACCTCATAAAATACTGTGTTG  900

seq1  CTTTCTCTTGCTGCATATAATTTGCCAAGATTTCTAGTCTTAAAATTTCA  949
      |||||||||||||||||||||||||||||||||||| || ||||||||||
seq2  CTTTCTCTTGCTGCATATAATTTGCCAAGATTTCTATTC-TAAAATTTCA  949

seq1  TGTCCTTAAAATGATCTTATTGAATAGATTATATATATATATATATATAT  999
      |||||||||||||||||||||||||||||||||||||||           
seq2  TGTCCTTAAAATGATCTTATTGAATAGATTATATATATA-----------  988

seq1  ATTTTACCTTTCCATATATATACATACATATATATATAACAATTGTGCTT  1049
           |||||||||||| |||| ||     || |||  |||||||||| |
seq2  ---GCACCTTTCCATAT-TATATAT-----TACATA-CACAATTGTGC-T  1027

seq1  TTATATGTGTGTGCATCAGTGTACACA  1076
      ||||| || ||||||||| ||||||||
seq2  TTATA-GT-TGTGCATCA-TGTACACA  1051