BAC Information

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BAC

Clone NameB6Ng01-006H09
Chromosome3 (Build37)
Map Location 92,043,198 - 92,130,263
singlet/doubletdoublet
Overlap geneLOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b
Upstream geneLOC100042463, Pglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543
Downstream geneSprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006H09.bB6Ng01-006H09.g
ACCDH843313DH843314
length1,0961,052
definitionDH843313|Mus musculus domesticus DNA, BAC clone: B6Ng01-006H09, 5' end.DH843314|Mus musculus domesticus DNA, BAC clone: B6Ng01-006H09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,129,165 - 92,130,263)(92,043,198 - 92,045,014)
sequence
gaattcacaaagaatcaccttcaagacaggaagccacaagtactagtgac
ctgaaaaatcacaaaaccagtttctgtcctcttcattgcttgtatcatcc
caacagattgtctgaagttggacagtaaaagacagttgaggaatctcagg
ctctaatacctgctaaggtataaggcctttcaaacaacaccaaaatatgc
atataaaagagaaataaactcttttaaaccacctatcaaataaaaggaaa
agctgcttaccacaggggtctattgtatccattgctaaacttatgactac
taggaatgtgcctttcatctcataatcaaaactgaacacatgacacttac
tcccaaaaactcactacagcactcggaataaacataaagacagaccaaat
caagaaagggcactcaccgggttcaccaaactagaccaggatttcagtac
caggagtctgcagttgtgcagccaaggatccctttataggattggctggc
caggccagtgtgagcagaactgactgagaatttcccaaccaaaatgcaaa
ccagtgcatgacgagctggactgggaccctaaagatgggaaatgccctct
ttctggacttcatcactactgagtgtagtgactcagtgggtgttccccca
tttcagtgtcagtaagatctcactggtttcctaagttcttttgttgttgt
tgtcgaagtcaatatttctttttttgttgttttgttttgttataattctg
ttgtgtcctaactcatgcattctatttgttctgcttcaggttattcatat
tcattgatgtgctggcccatttatattcctgttttgtaggaatataattt
gtctacaggatgaaataaaatattaaagggattttagctgtgattttgaa
ttcttctttaacaaccatgtgtgaaggtcagtcatatcttctgcctatta
tgtactatgcttttgtgaattatgggaaatagtatacgctccttcataga
ggggctatagccttggttgttatctgacacttcttcatgactgcatgtca
aatgacatattgggagtatatatttcgaactcacctttgagactgt
gaattctgaggaggaacagcaaggggaagaaataaggtcagaaatagaga
cacatgtacaataatgtcaagtgagctcttctactgctaaaaccacaatc
cagaacttcagtttgctaattaggcatatcgtagtgtgtataggtaggga
gcaatcaggactagctcttagctatgtggctctcagtcttggtaggactt
ctctgtaggtgaataacctcaggatagaatcattaaaaaggaataagctg
catttgttagtgtttgcacaaattgaccaatcattcttaaatactcactt
gtgaattcctgaagagaaatttgctatccttctgcatggcccatacagtt
ctgagaacttggagtcattaattaggctgtcccgagtgaacaatacacat
ttcctaagaatgtcacctgcttatgtcttcctccactccctacaaatgga
ctgttatgggaaatcacaaacaatgctacattggcctgatcatgttgggc
ttgcatcacactcttcttaggagaacaaacttcctttgagcattctacag
aggatgttggcatgatttttgcatatgtgtcttctactatatttgtgatg
ctcctctgccacctacattttcctgtcactccaaagttgttctctaagag
gaaagtgtctaaaatatgtctgctgtggtctgaggctgtatatgtagcag
ggaggtagaattctgttgtggccgtcagcagctcgcaacgtgaacggttt
gactgagaaggccgctcgagctgtaagagaggaatttagacggggcggaa
gaaaaaacggagctaagacaatttcattctgatcaaagctcaaattttat
tgttgcgacattagttatgaaggaggggggaggggacccgattcccgcgg
aataatctctggttcagtagaaaggtgcacgtgtgtggctcctcaggttc
tagcagtgggcgtgcagacgaatgagcaggaagctccaccccagcagcag
gttcaggctaggggaggaagactacagaatctatcctattcagaccatca
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_92129165_92130263
seq2: B6Ng01-006H09.b_42_1137 (reverse)

seq1  ACAGTCTTCAAAGGTGAG-TCTGAATATATACTCCAAATATGTCATTTGA  49
      |||||| ||||||||||| ||  |||||||||||| ||||||||||||||
seq2  ACAGTC-TCAAAGGTGAGTTCGAAATATATACTCCCAATATGTCATTTGA  49

seq1  CATGCAGTCATGAAG-AGTGTCAAGATAACAACCAAGGCTATTAGCCCCC  98
      ||||||||||||||| |||||| |||||||||||||||||| ||| ||||
seq2  CATGCAGTCATGAAGAAGTGTC-AGATAACAACCAAGGCTA-TAG-CCCC  96

seq1  TCTATGAAGG-GCGTATACTATTTCCCATAATTCACAAAAAGCATAGTAC  147
      |||||||||| ||||||||||||||||||||||||| |||||||||||||
seq2  TCTATGAAGGAGCGTATACTATTTCCCATAATTCAC-AAAAGCATAGTAC  145

seq1  ATAATAGGCAGAAGATATGACCTGACCTTCACACATGGTTGTTAAAGAAG  197
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATAATAGGCAGAAGATATGA-CTGACCTTCACACATGGTTGTTAAAGAAG  194

seq1  AATTCAAAATCACAGCTAAAATCCCTTTAATATTTTATTTCATCCTGTAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAAATCACAGCTAAAATCCCTTTAATATTTTATTTCATCCTGTAG  244

seq1  ACAAATTATATTCCTACAAAACAGGAATATAAATGGGCCAGCACATCAAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTATATTCCTACAAAACAGGAATATAAATGGGCCAGCACATCAAT  294

seq1  GAATATGAATAACCTGAAGCAGAACAAATAGAATGCATGAGTTAGGACAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGAATAACCTGAAGCAGAACAAATAGAATGCATGAGTTAGGACAC  344

seq1  AACAGAATTATAACAAAACAAAACAACAAAAAAAGAAATATTGACTTCGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAATTATAACAAAACAAAACAACAAAAAAAGAAATATTGACTTCGA  394

seq1  CAACAACAACAAAAGAACTTAGGAAACCAGTGAGATCTTACTGACACTGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACAACAAAAGAACTTAGGAAACCAGTGAGATCTTACTGACACTGA  444

seq1  AATGGGGGAACACCCACTGAGTCACTACACTCAGTAGTGATGAAGTCCAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGGAACACCCACTGAGTCACTACACTCAGTAGTGATGAAGTCCAG  494

seq1  AAAGAGGGCATTTCCCATCTTTAGGGTCCCAGTCCAGCTCGTCATGCACT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGGCATTTCCCATCTTTAGGGTCCCAGTCCAGCTCGTCATGCACT  544

seq1  GGTTTGCATTTTGGTTGGGAAATTCTCAGTCAGTTCTGCTCACACTGGCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGCATTTTGGTTGGGAAATTCTCAGTCAGTTCTGCTCACACTGGCC  594

seq1  TGGCCAGCCAATCCTATAAAGGGATCCTTGGCTGCACAACTGCAGACTCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGCCAATCCTATAAAGGGATCCTTGGCTGCACAACTGCAGACTCC  644

seq1  TGGTACTGAAATCCTGGTCTAGTTTGGTGAACCCGGTGAGTGCCCTTTCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACTGAAATCCTGGTCTAGTTTGGTGAACCCGGTGAGTGCCCTTTCT  694

seq1  TGATTTGGTCTGTCTTTATGTTTATTCCGAGTGCTGTAGTGAGTTTTTGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGGTCTGTCTTTATGTTTATTCCGAGTGCTGTAGTGAGTTTTTGG  744

seq1  GAGTAAGTGTCATGTGTTCAGTTTTGATTATGAGATGAAAGGCACATTCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGTGTCATGTGTTCAGTTTTGATTATGAGATGAAAGGCACATTCC  794

seq1  TAGTAGTCATAAGTTTAGCAATGGATACAATAGACCCCTGTGGTAAGCAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGTCATAAGTTTAGCAATGGATACAATAGACCCCTGTGGTAAGCAG  844

seq1  CTTTTCCTTTTATTTGATAGGTGGTTTAAAAGAGTTTATTTCTCTTTTAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTTTTATTTGATAGGTGGTTTAAAAGAGTTTATTTCTCTTTTAT  894

seq1  ATGCATATTTTGGTGTTGTTTGAAAGGCCTTATACCTTAGCAGGTATTAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATATTTTGGTGTTGTTTGAAAGGCCTTATACCTTAGCAGGTATTAG  944

seq1  AGCCTGAGATTCCTCAACTGTCTTTTACTGTCCAACTTCAGACAATCTGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGAGATTCCTCAACTGTCTTTTACTGTCCAACTTCAGACAATCTGT  994

seq1  TGGGATGATACAAGCAATGAAGAGGACAGAAACTGGTTTTGTGATTTTTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGATACAAGCAATGAAGAGGACAGAAACTGGTTTTGTGATTTTTC  1044

seq1  AGGTCACTAGTACTTGTGGCTTCCTGTCTTGAAGGTGATTCTTTGTGAAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACTAGTACTTGTGGCTTCCTGTCTTGAAGGTGATTCTTTGTGAAT  1094

seq1  TC  1099
      ||
seq2  TC  1096

seq1: chr3_92043198_92045014
seq2: B6Ng01-006H09.g_69_1120

seq1  GAATTCTGAGGAGGAACAGCAAGGGGAAGAAATAAGGTCAGAAATAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGGAGGAACAGCAAGGGGAAGAAATAAGGTCAGAAATAGAGA  50

seq1  CACATGTACAATAATGTCAAGTGAGCTCTTCTACTGCTAAAACCACAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTACAATAATGTCAAGTGAGCTCTTCTACTGCTAAAACCACAATC  100

seq1  CAGAACTTCAGTTTGCTAATTAGGCATATCGTAGTGTGTATAGGTAGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTTCAGTTTGCTAATTAGGCATATCGTAGTGTGTATAGGTAGGGA  150

seq1  GCAATCAGGACTAGCTCTTAGCTATGTGGCTCTCAGTCTTGGTAGGACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCAGGACTAGCTCTTAGCTATGTGGCTCTCAGTCTTGGTAGGACTT  200

seq1  CTCTGTAGGTGAATAACCTCAGGATAGAATCATTAAAAAGGAATAAGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGGTGAATAACCTCAGGATAGAATCATTAAAAAGGAATAAGCTG  250

seq1  CATTTGTTAGTGTTTGCACAAATTGACCAATCATTCTTAAATACTCACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTTAGTGTTTGCACAAATTGACCAATCATTCTTAAATACTCACTT  300

seq1  GTGAATTCCTGAAGAGAAATTTGCTATCCTTCTGCATGGCCCATACAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTCCTGAAGAGAAATTTGCTATCCTTCTGCATGGCCCATACAGTT  350

seq1  CTGAGAACTTGGAGTCATTAATTAGGCTGTCCCGAGTGAACAATACACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAACTTGGAGTCATTAATTAGGCTGTCCCGAGTGAACAATACACAT  400

seq1  TTCCTAAGAATGTCACCTGCTTATGTCTTCCTCCACTCCCTACAAATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAAGAATGTCACCTGCTTATGTCTTCCTCCACTCCCTACAAATGGA  450

seq1  CTGTTATGGGAAATCACAAACAATGCTACATTGGCCTGATCATGTTGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATGGGAAATCACAAACAATGCTACATTGGCCTGATCATGTTGGGC  500

seq1  TTGCATCACACTCTTCTTAGGAGAACAAACTTCCTTTGAGCATTCTACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATCACACTCTTCTTAGGAGAACAAACTTCCTTTGAGCATTCTACAG  550

seq1  AGGATGTTGGCATGATTTTTGCATATGTGTCTTCTACTATATTTGTGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTTGGCATGATTTTTGCATATGTGTCTTCTACTATATTTGTGATG  600

seq1  CTCCTCTGCCACCTACATTTTCCTGTCACTCCAAAGTTGTTCTCTAAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTGCCACCTACATTTTCCTGTCACTCCAAAGTTGTTCTCTAAGAG  650

seq1  GAAAGTGTCTAAAATATGTCTGCTGTGGTCTGAGGCTGTATATGTAGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGTCTAAAATATGTCTGCTGTGGTCTGAGGCTGTATATGTAGCAG  700

seq1  GGAGGTAGAATTCTGTTGTGGCCGTCAGCAGCTCGCAACGTGAACGGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTAGAATTCTGTTGTGGCCGTCAGCAGCTCGCAACGTGAACGGTTT  750

seq1  GACTGAGAAGGCCGCTCGAGCTGTAAGAGAGGAATTTAGACGGGGCGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGAAGGCCGCTCGAGCTGTAAGAGAGGAATTTAGACGGGGCGGAA  800

seq1  GAAAAAACGGAGCTAAGACAATTTCATTCTGATCAAAGCTCAAATTTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAACGGAGCTAAGACAATTTCATTCTGATCAAAGCTCAAATTTTAT  850

seq1  TGTTGCGACATTAGTTATGAAGGAAGGGGGAGGGGACCCGATTCCCGCGG  900
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGTTGCGACATTAGTTATGAAGGAGGGGGGAGGGGACCCGATTCCCGCGG  900

seq1  AATAATCTCTGGTCCAGTAGAAAGGTGCACGTGTGTGGCTCCTCAGGTTC  950
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AATAATCTCTGGTTCAGTAGAAAGGTGCACGTGTGTGGCTCCTCAGGTTC  950

seq1  TAGCAGTGGGCGTGGCAGAACGAATGAGCAGGAAGCTCCACCCCAGCAAG  1000
      ||||||||||||| |||| |||||||||||||||||||||||||||| ||
seq2  TAGCAGTGGGCGT-GCAG-ACGAATGAGCAGGAAGCTCCACCCCAGC-AG  997

seq1  CAGGTTTCAGGCTAGGGGAGGGGAGACTAC---ATCTCCTCCCTTTTATT  1047
      |||| |||||||||||||| || |||||||   ||||  |||    ||||
seq2  CAGG-TTCAGGCTAGGGGA-GGAAGACTACAGAATCT-ATCC----TATT  1040

seq1  AACAAAATTAAAAAAAGAAAAAGCTGGCCTGAGGGGGGAAAATTATCTAT  1097
       | |  || |                                        
seq2  CAGACCATCATG--------------------------------------  1052

seq1  GCTCAATAGTTCTGCCTGGAATCTAGGGCTAAAGAAAAAACTTGCTTCAC  1147
                                                        
seq2  --------------------------------------------------  1052

seq1  TGGGATTCTTTAACTTTTTTTATGGTAAACTGTATCTGGCTTAAGACTGT  1197
                                                        
seq2  --------------------------------------------------  1052

seq1  CCTTTTTAGTAAACAACTAACTGAAAGGCCTGGAGCTGCAGACTCTGACT  1247
                                                        
seq2  --------------------------------------------------  1052

seq1  TTATAATGCTAATTAGTACTTGGTAGGTAACTTTCTAGTTGAATTTTAAG  1297
                                                        
seq2  --------------------------------------------------  1052

seq1  TAGGGCGTTGGAACTCTGGCTAAGTTTGACTGAACGATGTGAAAATAACA  1347
                                                        
seq2  --------------------------------------------------  1052

seq1  CTAAGTTGAATTCCTCCGCATTTTTGGAAGATAGGTGGGAAACAGGGAGA  1397
                                                        
seq2  --------------------------------------------------  1052

seq1  AGGCGTTCAACCGGCTCTTTTATTTGGGTGGGAGGCAGTGAAGGGCTTGC  1447
                                                        
seq2  --------------------------------------------------  1052

seq1  CCTTTCAATAGTACGTCTCTAAAATGTTGTGGCCGTCAGCAGCTCGCAAC  1497
                                                        
seq2  --------------------------------------------------  1052

seq1  GTGAACGGTTTGACTGAGAAGGCCGCTCGAGCTGTAAGAGAGGAATCTAG  1547
                                                        
seq2  --------------------------------------------------  1052

seq1  ACGGGGCGGAAGAAAAAACGGAGCTAAGACAATTTCATTCTGATCAAAGC  1597
                                                        
seq2  --------------------------------------------------  1052

seq1  TCAAATTTTATTGTTGCGACATTAGTTATAAAAAAAGGGAGAGGGGACCC  1647
                                                        
seq2  --------------------------------------------------  1052

seq1  GATTCCCGCCAAATAATCTCTGGTCCAATAGAAAGGTACACGTGTGTGGC  1697
                                                        
seq2  --------------------------------------------------  1052

seq1  TCCTCAGGTTCTAGCAGTGGGCGTGACAGAACAAATGAGCAGAAAGCTCC  1747
                                                        
seq2  --------------------------------------------------  1052

seq1  ACCCCAACAAGCAGGTTTCAGGCTAGGGGAGGAGAGACTACAGAATTCTA  1797
                                                        
seq2  --------------------------------------------------  1052

seq1  TCCTATTCAGACCAGTCATG  1817
                          
seq2  --------------------  1052