BAC Information

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BAC

Clone NameB6Ng01-006J05
Chromosome3 (Build37)
Map Location 88,683,893 - 88,829,250
singlet/doubletdoublet
Overlap gene5830417I10Rik, Msto1, Dap3, Ash1l
Upstream genePrcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11
Downstream geneRusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006J05.bB6Ng01-006J05.g
ACCDH843394DH843395
length1,1521,029
definitionDH843394|Mus musculus domesticus DNA, BAC clone: B6Ng01-006J05, 5' end.DH843395|Mus musculus domesticus DNA, BAC clone: B6Ng01-006J05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,683,893 - 88,685,063)(88,828,216 - 88,829,250)
sequence
gaattctgtaggttttacttacgtttctcattgctggagagacttatata
tagggaccattcccttgagaaaaccctcctctttttttgctcccccaaag
ttccaagatgaaatgggattctcaaatatggaagatgatggcccagagga
agaggagcgtgcaacagagtctcggcctagcttcaacacccctcaagccc
tacggtatgctggctgagacttagagtgaaacgattaatgtattttgaaa
aggtttgctgttgttttttaaattattattaatctttaatcagcctctta
cttaggatggggagccctggaggtaagtttgttgtcaaacaaacgaaaac
actctccttgttttggggcagagcagctatagacaaggctgtatctgttt
gggaaaggagaaaaagcatagctgggccttcgagcagctcctccaggcga
gtggtgctggagcggtatggagagcttcacatgggcagccacagaaactc
ccctccactgaatgtctgcatgatgcttgtgttcattgttcgttcgtcat
taacatctaatttgccacttaggcattgttgagcaaacatcctgctatga
tgtcctaagagccagaagtatatactagtaagtaactagtatgtacaaag
ttatactagaagtgataaggggtgacattatcttctatgaccacttcctg
ttgacatctgggtgtcacagttggggacccaagaaaacttgaatgctggc
caaagtcaggaaaagcaggctctgtggttcctgtcccagctctgttgggc
agagataggaaaggagacagggaagcgtggacctggctggagcagcctgt
gaggctggacccctggggtagggtgctgtggcgctgacccctggagctgg
ccgagttgattttaaatctgctgggacagatcactagagagagagttaaa
gttaggatttaggggaaatttttatccaggtgtacatttgaaatttctgc
tacgatcctggtagttgctgagggggagtcctagaccagggagaaagaga
tcctcctaccctcccacggtagcagtgatgtaactaagctgtggggaaag
gattatatggagtgctatttacctgggaagggacaattcgacgttccatt
ca
gaattcactctgtagaccaggctggctttgaaccaagagatctgcctgcc
ttcatcactgaagtgctggaattaaaggtgagcatcactaacaacctgga
tggaagagaattttaaagtgaatttctttatgattatcagtaaatgttgg
gttaatatactgtttggttcaaagtgggcttataaaatagcagtgctgga
gacaatattgtgaacaaaagcctaaacataatccctcgggagtctcaaaa
tcctgcttaccaggaaaagcactaccttccttatctcccctacccataac
ggtcatctacctcaggtaaagaccatctcgggctcaattaattaattaat
taattaaattaatcaaagtagcctgcaccttgccgactatcttataaaac
acgaggactttgctgcccagttgctgttttctgttcccgagacagtcttt
gtgatttgatccccaataaactttcttactacccagagaaaggttcagct
tggcattttcacatttctcacagatacctattgtatgtgtatatattgta
tgtgtatatagatggggccatctaactttttcttggggaaaattttcgtg
ggtcaaaaaaaaaaagagactggaaagagcaggactgtgctggacaagtg
ctctatgaagacagtaaccaagccttgggctcttaagtctaatctttcag
ttttatactttttaaactgcctatgcctctcgagtgatggtattaaagaa
aacttttaaaaatactcctgaacctcctgattgtcttaatgactgtttca
ctttttttttttcttaaaaaacatcctgaaaactgagttcaggccagctg
tggcagcccatgcctacaatcccagtcctttgacacaaggctagttctta
actttaccatgaacaccttcttggggtttaaaaataacccatcctccctc
cctccctactgccccccttcttaaagaacaggtcaggcagtataagctct
ctatgtactgaggtggctcttctctgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_88683893_88685063
seq2: B6Ng01-006J05.b_44_1195

seq1  GAATTCTGTAGGTTTTACTTACGTTTCTCATTGCTGGAGAGACTTATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAGGTTTTACTTACGTTTCTCATTGCTGGAGAGACTTATATA  50

seq1  TAGGGACCATTCCCTTGAGAAAACCCTCCTCTTTTTTTGCTCCCCCAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGACCATTCCCTTGAGAAAACCCTCCTCTTTTTTTGCTCCCCCAAAG  100

seq1  TTCCAAGATGAAATGGGATTCTCAAATATGGAAGATGATGGCCCAGAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGATGAAATGGGATTCTCAAATATGGAAGATGATGGCCCAGAGGA  150

seq1  AGAGGAGCGTGCAACAGAGTCTCGGCCTAGCTTCAACACCCCTCAAGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGCGTGCAACAGAGTCTCGGCCTAGCTTCAACACCCCTCAAGCCC  200

seq1  TACGGTATGCTGGCTGAGACTTAGAGTGAAACGATTAATGTATTTTGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGTATGCTGGCTGAGACTTAGAGTGAAACGATTAATGTATTTTGAAA  250

seq1  AGGTTTGCTGTTGTTTTTTAAATTATTATTAATCTTTAATCAGCCTCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGCTGTTGTTTTTTAAATTATTATTAATCTTTAATCAGCCTCTTA  300

seq1  CTTAGGATGGGGAGCCCTGGAGGTAAGTTTGTTGTCAAACAAACGAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGATGGGGAGCCCTGGAGGTAAGTTTGTTGTCAAACAAACGAAAAC  350

seq1  ACTCTCCTTGTTTTGGGGCAGAGCAGCTATAGACAAGGCTGTATCTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCCTTGTTTTGGGGCAGAGCAGCTATAGACAAGGCTGTATCTGTTT  400

seq1  GGGAAAGGAGAAAAAGCATAGCTGGGCCTTCGAGCAGCTCCTCCAGGCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGGAGAAAAAGCATAGCTGGGCCTTCGAGCAGCTCCTCCAGGCGA  450

seq1  GTGGTGCTGGAGCGGTATGGAGAGCTTCACATGGGCAGCCACAGAAACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGCTGGAGCGGTATGGAGAGCTTCACATGGGCAGCCACAGAAACTC  500

seq1  CCCTCCACTGAATGTCTGCATGATGCTTGTGTTCATTGTTCGTTCGTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCACTGAATGTCTGCATGATGCTTGTGTTCATTGTTCGTTCGTCAT  550

seq1  TAACATCTAATTTGCCACTTAGGCATTGTTGAGCAAACATCCTGCTATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATCTAATTTGCCACTTAGGCATTGTTGAGCAAACATCCTGCTATGA  600

seq1  TGTCCTAAGAGCCAGAAGTATATACTAGTAAGTAACTAGTATGTACAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTAAGAGCCAGAAGTATATACTAGTAAGTAACTAGTATGTACAAAG  650

seq1  TTATACTAGAAGTGATAAGGGGTGACATTATCTTCTATGACCACTTCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTAGAAGTGATAAGGGGTGACATTATCTTCTATGACCACTTCCTG  700

seq1  TTGACATCTGGGTGTCACAGTTGGGGACCCAAGAAAACTTGAATGCTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATCTGGGTGTCACAGTTGGGGACCCAAGAAAACTTGAATGCTGGC  750

seq1  CAAAGTCAGGAAAAGCAGGCTCTGTGGTTCCTGTCCCAGCTCTGTTGGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCAGGAAAAGCAGGCTCTGTGGTTCCTGTCCCAGCTCTGTTGGGC  800

seq1  AGAGATAGGAAAGGAGACAGGGAAGCGTGGACCTGGCTGGAGCAGCCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAGGAAAGGAGACAGGGAAGCGTGGACCTGGCTGGAGCAGCCTGT  850

seq1  GAGGCTGGACCCCTGGGGTAGGGTGCTGTGGCGCTGACCCCTGGAGCTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGGACCCCTGGGGTAGGGTGCTGTGGCGCTGACCCCTGGAGCTGG  900

seq1  CCGAGTTGATTTTAAATCTGCTGGGACAGATCACTAGAGAGAGAAGTTAA  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCGAGTTGATTTTAAATCTGCTGGGACAGATCACTAGAGAGAG-AGTTAA  949

seq1  AGTTAAGGAATTTAGGGGAAATTTTTAATCCAGGGTGTACATTTGAAATT  1000
      |||||  | ||||||||||||||||| ||||| |||||||||||||||||
seq2  AGTTA--GGATTTAGGGGAAATTTTT-ATCCA-GGTGTACATTTGAAATT  995

seq1  TCCTGGCCTACGATCCTGGTAGTTGGCTGA-GGGGAGTCCCAAGACCAGG  1049
      | |||  ||||||||||||||||| ||||| ||||||| || |||||| |
seq2  T-CTG--CTACGATCCTGGTAGTT-GCTGAGGGGGAGT-CCTAGACCA-G  1039

seq1  GGAGAAAGAGA-CCTCCTACCCTCACACGTAGGCAGTAGATGGGAAACTT  1098
      ||||||||||| |||||||||||| ||||   ||||| |||  | ||| |
seq2  GGAGAAAGAGATCCTCCTACCCTCCCACGGTAGCAGT-GAT--GTAAC-T  1085

seq1  AGGCTGTTGGGTGACAGTATTTATATGGAGT-CTATTTTACCTGGGAGAG  1147
      | |||||  || || || | ||||||||||| ||| |||||||||||  |
seq2  AAGCTGT--GGGGAAAGGA-TTATATGGAGTGCTA-TTTACCTGGGAAGG  1131

seq1  GACAATTCAAATCAGTTCCATTCA  1171
      |||||||| |    ||||||||||
seq2  GACAATTCGA---CGTTCCATTCA  1152

seq1: chr3_88828216_88829250
seq2: B6Ng01-006J05.g_69_1097 (reverse)

seq1  CAGCAGAGCAAGCAGTGAGAGCCACCTCAAGTACATAGAGAGC-TATACC  49
      ||||||||         ||||||||||| |||||||||||||| |||| |
seq2  CAGCAGAG--------AAGAGCCACCTC-AGTACATAGAGAGCTTATA-C  40

seq1  TGCCTGACCTGTCTTTTAAGAAGGGGGGGCAGTAGGGAGGGAGGGAGGAT  99
      ||||||||||||  |||||||| |||||||||||||||||||||||||||
seq2  TGCCTGACCTGTTCTTTAAGAA-GGGGGGCAGTAGGGAGGGAGGGAGGAT  89

seq1  -GGTAATTTTTAAACACCAAG-AGGTGTTCATGGTAAAGTTAAGAACTAG  147
       ||| |||||||||| ||||| ||||||||||||||||||||||||||||
seq2  GGGTTATTTTTAAACCCCAAGAAGGTGTTCATGGTAAAGTTAAGAACTAG  139

seq1  CCTTGTGTCAAAGGACTGGGATTGTAGGCATGGGCTGCCACAGCTGGCCT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGTCAAAGGACTGGGATTGTAGGCATGGGCTGCCACAGCTGGCCT  189

seq1  GAACTCAGTTTTCAGGATGTTTTTTAAG-AAAAAAAAAAGTGAAACAGTC  246
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAACTCAGTTTTCAGGATGTTTTTTAAGAAAAAAAAAAAGTGAAACAGTC  239

seq1  ATTAAGACAATCAGGAGGTTCAGGAGTATTTTT-AAAGTTTTCTTTAATA  295
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATTAAGACAATCAGGAGGTTCAGGAGTATTTTTAAAAGTTTTCTTTAATA  289

seq1  CCATCACTCGAGAGGCATAGGCAGTTTGAAAAGTATAAAACTGAAAGATT  345
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCATCACTCGAGAGGCATAGGCAGTTTAAAAAGTATAAAACTGAAAGATT  339

seq1  AGACTTAAGAGCCCAAGGCTTGGTTACTGTCTTCATAGAGCACTTGTCCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTAAGAGCCCAAGGCTTGGTTACTGTCTTCATAGAGCACTTGTCCA  389

seq1  GCACAGTCCTGCTCTTTCCAGTCTCTTTTTTTTTTTGACCCACGAAAATT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTCCTGCTCTTTCCAGTCTCTTTTTTTTTTTGACCCACGAAAATT  439

seq1  TTCCCCAAGAAAAAGTTAGATGGCCCCATCTATATACACATACAATATAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAAGAAAAAGTTAGATGGCCCCATCTATATACACATACAATATAT  489

seq1  ACACATACAATAGGTATCTGTGAGAAATGTGAAAATGCCAAGCTGAACCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACAATAGGTATCTGTGAGAAATGTGAAAATGCCAAGCTGAACCT  539

seq1  TTCTCTGGGTAGTAAGAAAGTTTATTGGGGATCAAATCACAAAGACTGTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGGGTAGTAAGAAAGTTTATTGGGGATCAAATCACAAAGACTGTC  589

seq1  TCGGGAACAGAAAACAGCAACTGGGCAGCAAAGTCCTCGTGTTTTATAAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGAACAGAAAACAGCAACTGGGCAGCAAAGTCCTCGTGTTTTATAAG  639

seq1  ATAGTCGGCAAGGTGCAGGCTACTTTGATTAATTTAATTAATTAATTAAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCGGCAAGGTGCAGGCTACTTTGATTAATTTAATTAATTAATTAAT  689

seq1  TAATTGAGCCCGAGATGGTCTTTACCTGAGGTAGATGACCGTTATGGGTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGAGCCCGAGATGGTCTTTACCTGAGGTAGATGACCGTTATGGGTA  739

seq1  GGGGAGATAAGGAAGGTAGTGCTTTTCCTGGTAAGCAGGATTTTGAGACT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGATAAGGAAGGTAGTGCTTTTCCTGGTAAGCAGGATTTTGAGACT  789

seq1  CCCGAGGGATTATGTTTAGGCTTTTGTTCACAATATTGTCTCCAGCACTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGGGATTATGTTTAGGCTTTTGTTCACAATATTGTCTCCAGCACTG  839

seq1  CTATTTTATAAGCCCACTTTGAACCAAACAGTATATTAACCCAACATTTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTATAAGCCCACTTTGAACCAAACAGTATATTAACCCAACATTTA  889

seq1  CTGATAATCATAAAGAAATTCACTTTAAAATTCTCTTCCATCCAGGTTGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAATCATAAAGAAATTCACTTTAAAATTCTCTTCCATCCAGGTTGT  939

seq1  TAGTGATGCTCACCTTTAATTCCAGCACTTCAGTGATGAAGGCAGGCAGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATGCTCACCTTTAATTCCAGCACTTCAGTGATGAAGGCAGGCAGA  989

seq1  TCTCTTGGTTCAAAGCCAGCCTGGTCTACAGAGTGAATTC  1035
      ||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGGTTCAAAGCCAGCCTGGTCTACAGAGTGAATTC  1029