BAC Information

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BAC

Clone NameB6Ng01-006K19
Chromosome3 (Build37)
Map Location 47,123,927 - 47,228,396
singlet/doubletdoublet
Overlap genenone
Upstream geneEG241989, LOC545517, LOC383849, LOC383850
Downstream geneLOC100039426, LOC666202, LOC666208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006K19.bB6Ng01-006K19.g
ACCDH843468DH843469
length6101,040
definitionDH843468|Mus musculus domesticus DNA, BAC clone: B6Ng01-006K19, 5' end.DH843469|Mus musculus domesticus DNA, BAC clone: B6Ng01-006K19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,123,927 - 47,124,536)(47,227,358 - 47,228,396)
sequence
gaattccaggttagacatttttctttctaaaattggagcaacagtaaaga
cacgaggcttccattttatcttctctcagtgtagttacgaatatcattgt
tattacataacagacatagagaaagtaagaggactatgtttttatcaaat
ttatctgttccctcaaatcccattgagaaacattggctggaatcacaaag
tcagtgattcctaagacctttccatagattgaaactataaaaagtgcttg
ctgacagaagcctgatatatctgtctcctgagaggctccaccagtgcctg
acaaagacagaggtggatgctcacagcctaccattggcttgaacacaggg
tccccattgaatgatctagagaaaggatccaaggagctgaaggggtttgc
agccccataggagaacaacaatatgaactaaccagtacctccagagctcc
cagggactaaaccaccaaccaaagaatacacatggtgggactcatggctc
cagctgcatatgtagcagaggaggagaggtccttggttctgtgaaggctc
tatgccccagtgtaggggaatgccagagccaggaagctggagtgggtggg
ttggtgagca
gaattcaattttttagataacttcaaaaaatgttgtcatcagcatcattg
gaaaagcaaaaccaattaactgaacaatgacaacccaaagaagtacaacc
taaactgaaatccatgaaaagctactcacagaaatgctggaggtgatttt
tttagccaatgaacagttgtcaaatatcggaaaagaaaaaggatggaagc
cccatctgttgtctattacttctaccaaagaggtgagaaaacgccaatgc
caaagcacaaataatcaaactctgaactctaggatattttcatactgggt
atattttcaaataagttcataaaattaaaatcacaaaatgataaaagtca
cagaaggttctgtcaatttctgtacctaggagagtggtttcccagggccc
agactctggatggttttattcatgattgagatagcttacagttttccaga
cctcaggacagtgctatgatctgctcgctttatggtcaagccttacctac
aacagtaacgtggaccatccttcagtctcttccagcacatggtcagcaaa
tcgttggaaccaaaaccactcagtactgcatgagtagtttttaaataaga
gagttaaaggataataggaaaattgtctttcttctttaccagttgtcaat
aataacagctcacagttattgaaaggacactcttgccagagacaacagca
ataaatttcaatcatttctcttattgataagcaaaggatgagaagcactg
agggagggagacaaagcaatgaatcaatgtttgtttcttatcaacagtaa
tgagagtgtagaagataattctaaaagcaatgccttctttcctcaaacaa
agcagtcgaaagtattgagctaatacatggacatttcatcattatatgca
aaggtctgctttctggatctactcacttgagatcacacaccataggttca
ggaaataaacatgtgggaataattctggagaaagaaggtaatgttcatga
aaaaggcttacattaggataccaaaaagttagtggtacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_47123927_47124536
seq2: B6Ng01-006K19.b_45_654

seq1  GAATTCCAGGTTAGACATTTTTCTTTCTAAAATTGGAGCAACAGTAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTTAGACATTTTTCTTTCTAAAATTGGAGCAACAGTAAAGA  50

seq1  CACGAGGCTTCCATTTTATCTTCTCTCAGTGTAGTTACGAATATCATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGGCTTCCATTTTATCTTCTCTCAGTGTAGTTACGAATATCATTGT  100

seq1  TATTACATAACAGACATAGAGAAAGTAAGAGGACTATGTTTTTATCAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACATAACAGACATAGAGAAAGTAAGAGGACTATGTTTTTATCAAAT  150

seq1  TTATCTGTTCCCTCAAATCCCATTGAGAAACATTGGCTGGAATCACAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGTTCCCTCAAATCCCATTGAGAAACATTGGCTGGAATCACAAAG  200

seq1  TCAGTGATTCCTAAGACCTTTCCATAGATTGAAACTATAAAAAGTGCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGATTCCTAAGACCTTTCCATAGATTGAAACTATAAAAAGTGCTTG  250

seq1  CTGACAGAAGCCTGATATATCTGTCTCCTGAGAGGCTCCACCAGTGCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGAAGCCTGATATATCTGTCTCCTGAGAGGCTCCACCAGTGCCTG  300

seq1  ACAAAGACAGAGGTGGATGCTCACAGCCTACCATTGGCTTGAACACAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGACAGAGGTGGATGCTCACAGCCTACCATTGGCTTGAACACAGGG  350

seq1  TCCCCATTGAATGATCTAGAGAAAGGATCCAAGGAGCTGAAGGGGTTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATTGAATGATCTAGAGAAAGGATCCAAGGAGCTGAAGGGGTTTGC  400

seq1  AGCCCCATAGGAGAACAACAATATGAACTAACCAGTACCTCCAGAGCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCATAGGAGAACAACAATATGAACTAACCAGTACCTCCAGAGCTCC  450

seq1  CAGGGACTAAACCACCAACCAAAGAATACACATGGTGGGACTCATGGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACTAAACCACCAACCAAAGAATACACATGGTGGGACTCATGGCTC  500

seq1  CAGCTGCATATGTAGCAGAGGAGGAGAGGTCCTTGGTTCTGTGAAGGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCATATGTAGCAGAGGAGGAGAGGTCCTTGGTTCTGTGAAGGCTC  550

seq1  TATGCCCCAGTGTAGGGGAATGCCAGAGCCAGGAAGCTGGAGTGGGTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCCAGTGTAGGGGAATGCCAGAGCCAGGAAGCTGGAGTGGGTGGG  600

seq1  TTGGTGAGCA  610
      ||||||||||
seq2  TTGGTGAGCA  610

seq1: chr3_47227358_47228396
seq2: B6Ng01-006K19.g_69_1108 (reverse)

seq1  GTGTACCACT-ACTTTTTGGTAATCTAATGT-AGCCTTTTTCATTGAACA  48
      |||||||||| |||||||||||  ||||||| ||||||||||| ||||||
seq2  GTGTACCACTAACTTTTTGGTATCCTAATGTAAGCCTTTTTCA-TGAACA  49

seq1  TTACCTTCTTTCTCCAGAATTATTCCCACATGTTTATTTCCTTGAACCTA  98
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTACCTTCTTTCTCCAGAATTATTCCCACATGTTTATTTCC-TGAACCTA  98

seq1  TGGTGTGTGATCTCAAGTGAGTAGATCCAGAAAGCAGACCTTTGCATATA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGTGATCTCAAGTGAGTAGATCCAGAAAGCAGACCTTTGCATATA  148

seq1  ATGATGAAATGTCCATGTATTAGCTCAATACTTTCGACTGCTTTGTTTG-  197
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATGATGAAATGTCCATGTATTAGCTCAATACTTTCGACTGCTTTGTTTGA  198

seq1  GGGAAGGAGGCATTGCTTTTAGAATTATCTTCTACACTCTCATTACTGTT  247
      || ||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAAGGCATTGCTTTTAGAATTATCTTCTACACTCTCATTACTGTT  248

seq1  GATAAGAAACAAACATTGATTCATTGCTTTGTCTCCCTCCCTCAGTGCTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGAAACAAACATTGATTCATTGCTTTGTCTCCCTCCCTCAGTGCTT  298

seq1  CTCATCCTTTGCTTATCAATAAGAGAAATGATTGAAATTTATTGCTGTTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCTTTGCTTATCAATAAGAGAAATGATTGAAATTTATTGCTGTTG  348

seq1  TCTCTGGCAAGAGTGTCCTTTCAATAACTGTGAGCTGTTATTATTGACAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGCAAGAGTGTCCTTTCAATAACTGTGAGCTGTTATTATTGACAA  398

seq1  CTGGTAAAGAAGAAAGACAATTTTCCTATTATCCTTTAACTCTCTTATTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAAAGAAGAAAGACAATTTTCCTATTATCCTTTAACTCTCTTATTT  448

seq1  AAAAACTACTCATGCAGTACTGAGTGGTTTTGGTTCCAACGATTTGCTGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTACTCATGCAGTACTGAGTGGTTTTGGTTCCAACGATTTGCTGA  498

seq1  CCATGTGCTGGAAGAGACTGAAGGATGGTCCACGTTACTGTTGTAGGTAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGCTGGAAGAGACTGAAGGATGGTCCACGTTACTGTTGTAGGTAA  548

seq1  GGCTTGACCATAAAGCGAGCAGATCATAGCACTGTCCTGAGGTCTGGAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGACCATAAAGCGAGCAGATCATAGCACTGTCCTGAGGTCTGGAAA  598

seq1  ACTGTAAGCTATCTCAATCATGAATAAAACCATCCAGAGTCTGGGCCCTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAGCTATCTCAATCATGAATAAAACCATCCAGAGTCTGGGCCCTG  648

seq1  GGAAACCACTCTCCTAGGTACAGAAATTGACAGAACCTTCTGTGACTTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCACTCTCCTAGGTACAGAAATTGACAGAACCTTCTGTGACTTTT  698

seq1  ATCATTTTGTGATTTTAATTTTATGAACTTATTTGAAAATATACCCAGTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTGTGATTTTAATTTTATGAACTTATTTGAAAATATACCCAGTA  748

seq1  TGAAAATATCCTAGAGTTCAGAGTTTGATTATTTGTGCTTTGGCATTGGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATATCCTAGAGTTCAGAGTTTGATTATTTGTGCTTTGGCATTGGC  798

seq1  GTTTTCTCACCTCTTTGGTAGAAGTAATAGACAACAGATGGGGCTTCCAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTCACCTCTTTGGTAGAAGTAATAGACAACAGATGGGGCTTCCAT  848

seq1  CCTTTTTCTTTTCCGATATTTGACAACTGTTCATTGGCTAAAAAAATCAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTCTTTTCCGATATTTGACAACTGTTCATTGGCTAAAAAAATCAC  898

seq1  CTCCAGCATTTCTGTGAGTAGCTTTTCATGGATTTCAGTTTAGGTTGTAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCATTTCTGTGAGTAGCTTTTCATGGATTTCAGTTTAGGTTGTAC  948

seq1  TTCTTTGGGTTGTCATTGTTCAGTTAATTGGTTTTGCTTTTCCAATGATG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGGGTTGTCATTGTTCAGTTAATTGGTTTTGCTTTTCCAATGATG  998

seq1  CTGATGACAACATTTTTTGAAGTTATCTAAAAAATTGAATTC  1039
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGACAACATTTTTTGAAGTTATCTAAAAAATTGAATTC  1040