BAC Information

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BAC

Clone NameB6Ng01-007D01
Chromosome3 (Build37)
Map Location 144,489,213 - 144,593,581
singlet/doubletdoublet
Overlap geneClca4, EG622139, AI747448
Upstream geneLOC100039938, LOC100039952, Lmo4, LOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2
Downstream geneClca6, Clca3, Clca5, Odf2l, Col24a1, 2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007D01.bB6Ng01-007D01.g
ACCDH843835DH843836
length1,137641
definitionDH843835|Mus musculus domesticus DNA, BAC clone: B6Ng01-007D01, 5' end.DH843836|Mus musculus domesticus DNA, BAC clone: B6Ng01-007D01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,592,420 - 144,593,581)(144,489,213 - 144,489,853)
sequence
gaattctcagcatagtcttctattgaatattacaagtacaaattcaatcc
tttgccaacatgtctatagtttagtggcttttgacacttagccttttaca
aagtcttctctcatcagaagatcacttgctctcctctacttatacaatga
ttttggaaaactcttataattgatgggttgatattctccattatcaagtt
tcttttgtattttatgttcaggatcctttgggatttaaaacctgaccact
tctgcaaacactgatatttcaggtttttaatttttttaagtctaaaacat
tattggaattctggggaggaacttagaatgaatacaataggactttggtt
agaaaactttgagaaacccttattaagcacccagtatcagtgaagatgaa
agttatctacaatgtctctgatagctctccatgacctacaaacacacccc
tatctaagaaagccagttgagtcatggggactctcaaggaaatgcagtcc
cttggagttatacaatatacaacctacacagttgtacacagcaagcctac
tggtccaattaataactcagtttgaaccactaccactctgttctcatatg
tacagagagtactctcttcctgaagcctaaatatctctcgttttgaaaag
tggcatccagggaaaaagagaattattttatcctccttctgtgtgtgcta
aacagcttctgagccactgtagagttcttcacaaacttgctgtactggac
cttcattctctagactctgacactgattaatctctcaactaatctctaat
cagcttgctgattctttaaaatgcatgtgagtcagagtgttggactctca
gagggcagcagggttgagagatggaggccttcagagcagtgggctttgat
aaagctgcaagtatcagaggggtcttgttcttgatagaaaagcagtggag
atgcagaaagcttctgtgaatgaagaaatttttgctttattatttattat
attgtttatgtttactcctctgagagctgctataagaaccttaattgctt
catctgtgttctcttattagattgaataatgtgaggagagaatccttaca
atgcagtagccttgactccgatacttgggagagaatg
gaattcttagtaggtgttcagtcctttttttgtggtgctcatttaaataa
tgattggggctcctatttcatataaaaagcttatcaaaataagaaaatat
aaagatagccgggcagtggtggtgcacgcctttaatcccagcacttggga
ggcagaggcaggtggatttctgagtttaaggccagcctggtcttcaaagt
gagttccaagatagccagggctacacagagaaaccatgtctcgaaaaaac
aaaacaaaaaaacaaaaaacaaaaacaacaacaacaaaaaacaaaaacaa
aaacaaaaaaaagaaaaaagaagaaaaaaaaaaagaaaaagaaaatataa
agataacaaagtggattaaaacactgccgccagaagtgagaaaaatggtc
ctcgagttccttccatggttcaagtaaaactaatgaactttaaggatgac
agtgtactgttagcattttgtctaaactttgccccacagttacctggcaa
tagccaggtgtgtctgactcactataaatggggctgcttgccccctcctc
tctctcttattcttactttcctgctcccgctgtgctctctccccattccc
ttctctaccccctctatgtcctcatggcccacccccctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_144592420_144593581
seq2: B6Ng01-007D01.b_47_1183 (reverse)

seq1  CATTCTCTCCC-AGTATCTGGAGTCCAAAGCTACTGCAATTTGTTAGGGG  49
      ||||||||||| |||||| ||||| ||| |||||||||  |||| |||  
seq2  CATTCTCTCCCAAGTATC-GGAGT-CAAGGCTACTGCA--TTGTAAGG--  44

seq1  ATTTCTCTCTCAACATTATCAATATCTAATAAAGAGAAACACAGATGAAA  99
        |||||||   |||||||  | ||||||| ||||| ||||||||||  |
seq2  -ATTCTCTCCTCACATTATTCA-ATCTAAT-AAGAG-AACACAGATG--A  88

seq1  AGCAATTAAGGTTCCTTATAACCAGGCTTCTCAGAGGGAAGTAAAACATA  149
      ||||||||||||| ||||| | |||   |||||||||  ||| |||||||
seq2  AGCAATTAAGGTT-CTTAT-AGCAG--CTCTCAGAGG--AGT-AAACATA  131

seq1  AACAAATATAAAATAAAATAAATA--AAAGCAAAAATATCTTCATTTCAC  197
      |||        |||| ||||||||  ||||||||||| |||||| |||||
seq2  AAC--------AATATAATAAATAATAAAGCAAAAATTTCTTCA-TTCAC  172

seq1  AGAAGCTTTCTGCATCTCCACTGCTTTTTCTATCAGGA--CAGACCCCTC  245
      |||||||||||||||||||||||| |||||||||| ||   |||||||||
seq2  AGAAGCTTTCTGCATCTCCACTGC-TTTTCTATCAAGAACAAGACCCCTC  221

seq1  TGATACTTGCAGCTTTATCAAAAGCCCACTGCTCCTGAAGGCCTCCATCT  295
      ||||||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  TGATACTTGCAGCTTTATC-AAAGCCCACTGCT-CTGAAGGCCTCCATCT  269

seq1  CTC-ACCCTGCTGCCCTCTGAGAGTCCAACACTCTGACTCACATGCATTT  344
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACCCTGCTGCCCTCTGAGAGTCCAACACTCTGACTCACATGCATTT  319

seq1  TAAAGAATCAGCAAGCTGATTAGAGATTAGTTGAGAGATTAATCAGTGTC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAATCAGCAAGCTGATTAGAGATTAGTTGAGAGATTAATCAGTGTC  369

seq1  AGAGTCTAGAGAATGAAGGTCCAGTACAGCAAGTTTGTGAAGAACTCTAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTAGAGAATGAAGGTCCAGTACAGCAAGTTTGTGAAGAACTCTAC  419

seq1  AGTGGCTCAGAAGCTGTTTAGCACACACAGAAGGAGGATAAAATAATTCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTCAGAAGCTGTTTAGCACACACAGAAGGAGGATAAAATAATTCT  469

seq1  CTTTTTCCCTGGATGCCACTTTTCAAAACGAGAGATATTTAGGCTTCAGG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCCCTGGATGCCACTTTTCAAAACGAGAGATATTTAGGCTTCAGG  519

seq1  AAGAGAGTACTCTCTGTACATATGAGAACAGAGTGGTAGTGGTTCAAACT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGTACTCTCTGTACATATGAGAACAGAGTGGTAGTGGTTCAAACT  569

seq1  GAGTTATTAATTGGACCAGTAGGCTTGCTGTGTACAACTGTGTAGGTTGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTATTAATTGGACCAGTAGGCTTGCTGTGTACAACTGTGTAGGTTGT  619

seq1  ATATTGTATAACTCCAAGGGACTGCATTTCCTTGAGAGTCCCCATGACTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTATAACTCCAAGGGACTGCATTTCCTTGAGAGTCCCCATGACTC  669

seq1  AACTGGCTTTCTTAGATAGGGGTGTGTTTGTAGGTCATGGAGAGCTATCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGCTTTCTTAGATAGGGGTGTGTTTGTAGGTCATGGAGAGCTATCA  719

seq1  GAGACATTGTAGATAACTTTCATCTTCACTGATACTGGGTGCTTAATAAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATTGTAGATAACTTTCATCTTCACTGATACTGGGTGCTTAATAAG  769

seq1  GGTTTCTCAAAGTTTTCTAACCAAAGTCCTATTGTATTCATTCTAAGTTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCAAAGTTTTCTAACCAAAGTCCTATTGTATTCATTCTAAGTTC  819

seq1  CTCCCCAGAATTCCAATAATGTTTTAGACTTAAAAAAATTAAAAACCTGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCAGAATTCCAATAATGTTTTAGACTTAAAAAAATTAAAAACCTGA  869

seq1  AATATCAGTGTTTGCAGAAGTGGTCAGGTTTTAAATCCCAAAGGATCCTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAGTGTTTGCAGAAGTGGTCAGGTTTTAAATCCCAAAGGATCCTG  919

seq1  AACATAAAATACAAAAGAAACTTGATAATGGAGAATATCAACCCATCAAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAAATACAAAAGAAACTTGATAATGGAGAATATCAACCCATCAAT  969

seq1  TATAAGAGTTTTCCAAAATCATTGTATAAGTAGAGGAGAGCAAGTGATCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGAGTTTTCCAAAATCATTGTATAAGTAGAGGAGAGCAAGTGATCT  1019

seq1  TCTGATGAGAGAAGACTTTGTAAAAGGCTAAGTGTCAAAAGCCACTAAAC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGAGAGAAGACTTTGTAAAAGGCTAAGTGTCAAAAGCCACTAAAC  1069

seq1  TATAGACATGTTGGCAAAGGATTGAATTTGTACTTGTAATATTCAATAGA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACATGTTGGCAAAGGATTGAATTTGTACTTGTAATATTCAATAGA  1119

seq1  AGACTATGCTGAGAATTC  1162
      ||||||||||||||||||
seq2  AGACTATGCTGAGAATTC  1137

seq1: chr3_144489213_144489853
seq2: B6Ng01-007D01.g_68_708

seq1  GAATTCTTAGTAGGTGTTCAGTCCTTTTTTTGTGGTGCTCATTTAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGTAGGTGTTCAGTCCTTTTTTTGTGGTGCTCATTTAAATAA  50

seq1  TGATTGGGGCTCCTATTTCATATAAAAAGCTTATCAAAATAAGAAAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGGGGCTCCTATTTCATATAAAAAGCTTATCAAAATAAGAAAATAT  100

seq1  AAAGATAGCCGGGCAGTGGTGGTGCACGCCTTTAATCCCAGCACTTGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAGCCGGGCAGTGGTGGTGCACGCCTTTAATCCCAGCACTTGGGA  150

seq1  GGCAGAGGCAGGTGGATTTCTGAGTTTAAGGCCAGCCTGGTCTTCAAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGCAGGTGGATTTCTGAGTTTAAGGCCAGCCTGGTCTTCAAAGT  200

seq1  GAGTTCCAAGATAGCCAGGGCTACACAGAGAAACCATGTCTCGAAAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCAAGATAGCCAGGGCTACACAGAGAAACCATGTCTCGAAAAAAC  250

seq1  AAAACAAAAAAACAAAAAACAAAAACAACAACAACAAAAAACAAAAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAAAACAAAAAACAAAAACAACAACAACAAAAAACAAAAACAA  300

seq1  AAACAAAAAAAAGAAAAAAGAAGAAAAAAAAAAAGAAAAAGAAAATATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAAAAGAAAAAAGAAGAAAAAAAAAAAGAAAAAGAAAATATAA  350

seq1  AGATAACAAAGTGGATTAAAACACTGCCGCCAGAAGTGAGAAAAATGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACAAAGTGGATTAAAACACTGCCGCCAGAAGTGAGAAAAATGGTC  400

seq1  CTCGAGTTCCTTCCATGGTTCAAGTAAAACTAATGAACTTTAAGGATGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAGTTCCTTCCATGGTTCAAGTAAAACTAATGAACTTTAAGGATGAC  450

seq1  AGTGTACTGTTAGCATTTTGTCTAAACTTTGCCCCACAGTTACCTGGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTACTGTTAGCATTTTGTCTAAACTTTGCCCCACAGTTACCTGGCAA  500

seq1  TAGCCAGGTGTGTCTGACTCACTATAAATGGGGCTGCTTGCCCCCTCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGGTGTGTCTGACTCACTATAAATGGGGCTGCTTGCCCCCTCCTC  550

seq1  TCTCTCTTATTCTTACTTTCCTGCTCCCGCTGTGCTCTCTCCCCATTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTATTCTTACTTTCCTGCTCCCGCTGTGCTCTCTCCCCATTCCC  600

seq1  TTCTCTACCCCCTCTATGTCCTCATGGCCCACCCCCCTCTT  641
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTACCCCCTCTATGTCCTCATGGCCCACCCCCCTCTT  641