BAC Information

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BAC

Clone NameB6Ng01-007D07
Chromosome3 (Build37)3 (Build37)
Map Location 93,818,423 - 93,818,54894,072,086 - 94,072,303
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCrct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356
Downstream geneLOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007D07.bB6Ng01-007D07.g
ACCDH843847DH843848
length126876
definitionDH843847|Mus musculus domesticus DNA, BAC clone: B6Ng01-007D07, 5' end.DH843848|Mus musculus domesticus DNA, BAC clone: B6Ng01-007D07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(93,818,423 - 93,818,548)(94,072,086 - 94,072,303)
sequence
gaattccatcccaaattcccgtcattttcactgatgcaacaatgtttctc
agaactctttccagaattctaacctggagaatggaaagggttttgtttgt
ttgtttgttgtatggggttgggggat
gaattctgacatagctaagccttcaccagtgttccaatgtcatagaaatt
ccttgaagctgacaaacttggaattcagtagaaattcagtaagaatgtta
acattcaaatttacttctggtagagacagtgaaactaattaggcattaca
aagaatggagcctgaatagctctgggctggtctgtagagtgtttacttgg
gacaatagccagtcttacccagagaagggaattcacaatggcctagggaa
taggtgggtttaccatgaaagagttagggaatccccctgaaacaggtttc
ttcactaggcccaaagaaacagcataatcaggcatttactaaaaacccct
ggtggtgggcttaacaatagactagcattacacctggctcccttcttagt
agtagcagcctggtccctgcctacttttgatgtatacattccttttgtat
tgtgtcactgtcactcaacagatgtatctcccttggtttcttgttgctct
tctgtataaaaagtttgatgctcgacttgaaaaattacactcagattcta
cacaatctctcatgtcgctttctgtctgttattcactgactcctccacct
gcaactagagacttgttctacacaatcagggaccaaaaacttaataaagt
cttagaaagagggggcaaaaggtcaagagacaaaacaacaggagatcgtc
ctcttagccttatgtaacttagtttgagttggaattaattcagtatttca
accaaacctgaggttaggcccaaataagggtctttaaatattctccatac
ttacgaatcttgaaaactaaaagatcctttattttctttaatataagtaa
cttgaaagtacatgccagtatgaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_93818423_93818548
seq2: B6Ng01-007D07.b_40_165

seq1  GAATTCCATCCCAAATTCCCGTCATTTTCACTGATGCAACAATGTTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCCAAATTCCCGTCATTTTCACTGATGCAACAATGTTTCTC  50

seq1  AGAACTCTTTCCAGAATTCTAACCTGGAGAATGGAAAGGGTTTTGTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCTTTCCAGAATTCTAACCTGGAGAATGGAAAGGGTTTTGTTTGT  100

seq1  TTGTTTGTTGTATGGGGTTGGGGGAT  126
      ||||||||||||||||||||||||||
seq2  TTGTTTGTTGTATGGGGTTGGGGGAT  126

seq1: chr3_94072086_94072303
seq2: B6Ng01-007D07.g_707_918

seq1  TTAATCAAGTCTTAGAAAGAGGGGGTAAAAAGTCAAGAGACAA---AACA  47
      ||||| ||||||||||||||||||| |||| ||||||||||||   ||||
seq2  TTAATAAAGTCTTAGAAAGAGGGGGCAAAAGGTCAAGAGACAAAACAACA  50

seq1  GGAGATAGTCCTCTTAGCCTTGTGTAACTTAGTTTAAGTTGGAATTAATT  97
      |||||| |||||||||||||| ||||||||||||| ||||||||||||||
seq2  GGAGATCGTCCTCTTAGCCTTATGTAACTTAGTTTGAGTTGGAATTAATT  100

seq1  CAGTAGTTCAACCAAAACCTGACGTTTAGGCCCAAAGAAGGATTCTTTAA  147
      ||||| ||||||| |||||||| | ||||||||||| ||||  ||||| |
seq2  CAGTATTTCAACC-AAACCTGA-GGTTAGGCCCAAATAAGG-GTCTTT-A  146

seq1  AATATTCTCCATACGTACGAATTCTTGAAAAACTAAAAAGATCCTTTTTG  197
      |||||||||||||| |||||| ||||| |||||| |||||||||  ||| 
seq2  AATATTCTCCATACTTACGAA-TCTTG-AAAACT-AAAAGATCC--TTTA  191

seq1  TTTTCTTTAATATAAGTAACT  218
      |||||||||||||||||||||
seq2  TTTTCTTTAATATAAGTAACT  212