BAC Information

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BAC

Clone NameB6Ng01-007E04
Chromosome3 (Build37)
Map Location 97,965,715 - 98,105,322
singlet/doubletdoublet
Overlap geneAdam30, LOC622561, Reg4, Hmgcs2
Upstream geneAcp6, Bcl9, Olfr1402, Chd1l, Fmo5, Prkab2, Pde4dip, Sec22b, EG433632, LOC100042975, Notch2
Downstream genePhgdh, Zfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3, LOC668557, Wars2, Tbx15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007E04.bB6Ng01-007E04.g
ACCDH843888DH843889
length1,004812
definitionDH843888|Mus musculus domesticus DNA, BAC clone: B6Ng01-007E04, 5' end.DH843889|Mus musculus domesticus DNA, BAC clone: B6Ng01-007E04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,104,322 - 98,105,322)(97,965,715 - 97,966,522)
sequence
gaattccgactaagacacagacctaaaacatgaaggcagaactctgaggg
aagatgcttgcaggtgtggtcagggctttaaaccatgggactcaccctca
cggctcccaagttagccacaatggttcagcttttgtgtttgtgcatgctc
tcaagtgagcgagtgagtgtgtacgtgtatatgtaatgtaccgatgaagc
ccaggctggccttgaattttgcgctccctctacctcaaccaccataattc
tgggattgcaggcatttgcctgacacccatacctatgactcaaatttctg
agcatccccccatcagtaatttgaccaagttcacctataagtctttttta
tataatatgcacttttccttataaacaccacaaaacaggaaaatcagtaa
aagagatagttagcaattgaacattttctgagcacttttattttatttta
ttttattttattttattttattttattttcgagacagggtttctctgtat
agccttggctgtcctggaactcactttgtagaccaggctggccttgaact
cagaaatctgcctgtctctgcctcccaagtactgggattaaaggcatgtg
ccaccactgcccagctgagcactgtaattttttaaggcgattttcatgaa
aacattccatagttaatttattctctgtactctgaccagtagttaatctc
tatattgatcactatccactggggattctctgatcacgggtaagctttac
taacctatgagtataaagttagatattagaaggcagtttgatactgtgtc
tatttagcaaggtaatagtttctcctctagggcctatgacctaccagcca
tgtgttacaatatcagcattatttccttctatagagctggcgtaaatcaa
ctagaaagatgtggtcactctgaaacatttgtgtcactactgcacagcac
tcaatgcatagatgagactacatctatattgcacagctcacaacggttca
ggga
gaattccttgctggatcagcaagcatcttcctcaatgttaatatccttgg
gcctgctacttggactgctcatgaattgggccattgtgtggggatgatac
atgatgaggaattctgtcaatgtagaggtaggaatagctgcttcatgggg
acaggacgtacagggtttagtaactgtatttaccatcagtattttttaca
ctcatcttataaaatgtcctattgtctgtctgacttcccaaagctacata
tcgtagagaggtgtggaaataaaattgtggaaaacaaagaggaatgtgac
tgtggttctaaagaagactgcaaaaaagacctgtgctgtgggccggactg
taaatggaaagaaggtgtcaactgctcctctgggctttgctgtcataaat
gtaacttccttccatcatgatatgtgtgtaggaaggaagtgaatgagtgt
gacctccaagagtactgttatgggacctcatgtgtctgtccgcatgactc
ttacaagcaggatggaactctgtgcagaaacggaggctttttgtttccgt
agggatgcacatcctagtacctgcaaatgccagtctatcttttgggcgta
aagccaaggaggcccctcaccagtgttacgaaagcagggaacatgttagg
tgaccagtctgggaactgtggcattgtaaatgctacccgatatacaggtg
tcatagaggcaacacaatcctgtggcaggctacagtgtatcaatgtaaag
gccttttccaaatttccagaatctcaccattatactgtcccattatctga
ggggagataatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_98104322_98105322
seq2: B6Ng01-007E04.b_54_1046 (reverse)

seq1  TCCCTGAGCCGTTTGTGGGGCTGTGCAATATAGATGTAGTCTCATCTATG  50
      ||||||| ||| |||| | |||||||||||||||||||||||||||||||
seq2  TCCCTGAACCG-TTGT-GAGCTGTGCAATATAGATGTAGTCTCATCTATG  48

seq1  CATTGAGTGCCTGTGCAGTAGTGACACAAATGTTATCAGAGTGACCACAT  100
      ||||||||| |||||||||||||||||||||||| |||||||||||||||
seq2  CATTGAGTG-CTGTGCAGTAGTGACACAAATGTT-TCAGAGTGACCACAT  96

seq1  CTTTCTAGTTGGATTTACGGCCAGCTCTATAGAAGGGAATTAATGCCTGA  150
      |||||||||| ||||||| ||||||||||||||| |||| ||||| ||||
seq2  CTTTCTAGTT-GATTTAC-GCCAGCTCTATAGAA-GGAAATAATG-CTGA  142

seq1  TATTGTAAACACATGGCTGGGTAGGTCATAGGCCCTAGAGGAGAAACTAT  200
      |||||| ||||||||||| |||||||||||||||||||||||||||||||
seq2  TATTGT-AACACATGGCT-GGTAGGTCATAGGCCCTAGAGGAGAAACTAT  190

seq1  TACCTTGCTAAATAGACACAGTATCAAACTGCCTTCTAAATATCTAACCT  250
      ||||||||||||||||||||||||||||||||||||| |||||||||| |
seq2  TACCTTGCTAAATAGACACAGTATCAAACTGCCTTCT-AATATCTAACTT  239

seq1  TATACTCATAGGTTAGTAAAGCTTACCCCTGATCAGAGAATCCCCAGTGG  300
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TATACTCATAGGTTAGTAAAGCTTACCCGTGATCAGAGAATCCCCAGTGG  289

seq1  ATAGTGATCAATATAGAGATTAACTACTGGTCAGAGTACAGAGAAT-AAT  349
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATAGTGATCAATATAGAGATTAACTACTGGTCAGAGTACAGAGAATAAAT  339

seq1  TAACTATGGAATGTTTTCATGAAAATCGCCTT-AAAAATTACAGTGCTCA  398
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAACTATGGAATGTTTTCATGAAAATCGCCTTAAAAAATTACAGTGCTCA  389

seq1  GCTGGGCAGTGGTGGCACATGCCTTTAATCCCAGTACTTGGGAGGCAGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCAGTGGTGGCACATGCCTTTAATCCCAGTACTTGGGAGGCAGAG  439

seq1  ACAGGCAGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCC  489

seq1  AGGACAGCCAAGGCTATACAGAGAAACCCTGTCTCGAAAATAAAATAAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGCCAAGGCTATACAGAGAAACCCTGTCTCGAAAATAAAATAAAA  539

seq1  TAAAATAAAATAAAATAAAATAAAATAAAAGTGCTCAGAAAATGTTCAAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAAAATAAAATAAAATAAAATAAAATAAAAGTGCTCAGAAAATGTTCAAT  589

seq1  TGCTAACTATCTCTTTTACTGATTTTCCTGTTTTGTGGTGTTTATAAGGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAACTATCTCTTTTACTGATTTTCCTGTTTTGTGGTGTTTATAAGGA  639

seq1  AAAGTGCATATTATATAAAAAAGACTTATAGGTGAACTTGGTCAAATTAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGCATATTATATAAAAAAGACTTATAGGTGAACTTGGTCAAATTAC  689

seq1  TGATGGGGGGATGCTCAGAAATTTGAGTCATAGGTATGGGTGTCAGGCAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGGGGATGCTCAGAAATTTGAGTCATAGGTATGGGTGTCAGGCAA  739

seq1  ATGCCTGCAATCCCAGAATTATGGTGGCTGAGGTAGAGGGAGTGCAAAAT  798
      ||||||||||||||||||||||||||| |||||||||||||| |||||||
seq2  ATGCCTGCAATCCCAGAATTATGGTGGTTGAGGTAGAGGGAGCGCAAAAT  789

seq1  TCAAGGCCAGCCTGGGCTACATCGGTACATTACATATACACGTACACACT  848
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCAAGGCCAGCCTGGGCTTCATCGGTACATTACATATACACGTACACACT  839

seq1  CACTCGCTCACTTGAGAGCATGCACAAACACAAAAGCTGAACCATTGTGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCGCTCACTTGAGAGCATGCACAAACACAAAAGCTGAACCATTGTGG  889

seq1  CTAACTTGGGAGCCGTGAGGGTGAGTCCACTGGTTTAAAGCCCTGACCAC  948
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  CTAACTTGGGAGCCGTGAGGGTGAGTCCCATGGTTTAAAGCCCTGACCAC  939

seq1  ACCTGCAAGCATCTTCCCTCAGAGTTCTGCCTTCATGTTTT-CGACTGTG  997
      |||||||||||||||||||||||||||||||||||||||||  | |||||
seq2  ACCTGCAAGCATCTTCCCTCAGAGTTCTGCCTTCATGTTTTAGGTCTGTG  989

seq1  TCTT  1001
      ||||
seq2  TCTT  993

seq1: chr3_97965715_97966522
seq2: B6Ng01-007E04.g_67_878

seq1  GAATTCCATGCTGGATCAGCAAGCAGCTTCCTCAATGTTAATATCCTTGG  50
      ||||||| ||||||||||||||||| ||||||||||||||||||||||||
seq2  GAATTCCTTGCTGGATCAGCAAGCATCTTCCTCAATGTTAATATCCTTGG  50

seq1  GCCTGCTACTTGGACTGCTCATGAATTGGGCCATTGTGTGGGGATGATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTACTTGGACTGCTCATGAATTGGGCCATTGTGTGGGGATGATAC  100

seq1  ATGATGAGGAATTCTGTCAGTGTAGAGGTAGGAAGAGCTGCATCATGGGG  150
      ||||||||||||||||||| |||||||||||||| |||||| ||||||||
seq2  ATGATGAGGAATTCTGTCAATGTAGAGGTAGGAATAGCTGCTTCATGGGG  150

seq1  ACAGGACGTACAGGGTTTAGTAACTGTAGTTACCATCAGTATTTTTTACA  200
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACAGGACGTACAGGGTTTAGTAACTGTATTTACCATCAGTATTTTTTACA  200

seq1  CGCATCTTATAAAATGTCCTATTGTCTGTCTGACTTCCCAAAGCTACATA  250
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTTATAAAATGTCCTATTGTCTGTCTGACTTCCCAAAGCTACATA  250

seq1  TCGTAGAGAGGTGTGGAAATAAAATTGTGGAAAACAAAGAGGAATGTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTAGAGAGGTGTGGAAATAAAATTGTGGAAAACAAAGAGGAATGTGAC  300

seq1  TGTGGTTCTAAAGAAGACTGCAAAAAAGACCTGTGCTGTGGGCCGGACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTCTAAAGAAGACTGCAAAAAAGACCTGTGCTGTGGGCCGGACTG  350

seq1  TAAATGGAAAGAAGGTGTCAACTGCTCCTCTGGGCTTTGCTGTCATAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGAAAGAAGGTGTCAACTGCTCCTCTGGGCTTTGCTGTCATAAAT  400

seq1  GTAACTTCCTTCCATCAGGATATGTGTGTAGGAAGGAAGTGAATGAGTGT  450
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTAACTTCCTTCCATCATGATATGTGTGTAGGAAGGAAGTGAATGAGTGT  450

seq1  GACCTCGAAGAGTACTGTGATGGGACCTCAGGTGTCTGTCCAGATGACTC  500
      |||||| ||||||||||| ||||||||||| ||||||||||  |||||||
seq2  GACCTCCAAGAGTACTGTTATGGGACCTCATGTGTCTGTCCGCATGACTC  500

seq1  TTACAAGCAGGATGGAACTCCATGCAGAAACGGAGGC-TTTTGTTTCCGT  549
      ||||||||||||||||||||  ||||||||||||||| ||||||||||||
seq2  TTACAAGCAGGATGGAACTCTGTGCAGAAACGGAGGCTTTTTGTTTCCGT  550

seq1  AAGGGATGCAGATCCAGGTACCTGC-AGTGCCAGTCTATC-TTTGGGCGT  597
       ||||||||| ||||  |||||||| | |||||||||||| |||||||||
seq2  -AGGGATGCACATCCTAGTACCTGCAAATGCCAGTCTATCTTTTGGGCGT  599

seq1  AAAGCCAAGGAGGCCCCTCACCAGTGTTACG-AAGCAGTGAACATGTTAG  646
      ||||||||||||||||||||||||||||||| |||||| |||||||||||
seq2  AAAGCCAAGGAGGCCCCTCACCAGTGTTACGAAAGCAGGGAACATGTTAG  649

seq1  GTGACCAGTCTGGGAACTGTGGCATTGTAAATGCTACCCGATATACAAGG  696
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTGACCAGTCTGGGAACTGTGGCATTGTAAATGCTACCCGATATAC-AGG  698

seq1  TGTCATAGAGGCAACACAAT-CTGTGGCAGGCTACAGTGTATCAATGTTA  745
      |||||||||||||||||||| ||||||||||||||||||||||||||| |
seq2  TGTCATAGAGGCAACACAATCCTGTGGCAGGCTACAGTGTATCAATGTAA  748

seq1  AAGCCCTCTCCAAATTTCCAG-ATCACACCATTATACTGTCCACTTATCT  794
      | ||| | ||||||||||||| ||| ||||||||||||||||  ||||||
seq2  AGGCCTTTTCCAAATTTCCAGAATCTCACCATTATACTGTCCCATTATCT  798

seq1  GAGGGGAGATAATC  808
      ||||||||||||||
seq2  GAGGGGAGATAATC  812