BAC Information

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BAC

Clone NameB6Ng01-007H06
Chromosome3 (Build37)
Map Location 100,584,335 - 100,730,546
singlet/doubletdoublet
Overlap geneVtcn1, Trim45
Upstream geneSpag17, LOC623045, Wdr3, Gdap2, LOC195514, 4930431B09Rik, OTTMUSG00000007026, Man1a2
Downstream geneTtf2, Igsf2, Ptgfrn, LOC668578, LOC668583, LOC669017, Cd2, LOC100043490, Igsf3, LOC100043032, Atp1a1, LOC100043036, BC037703, Slc22a15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007H06.bB6Ng01-007H06.g
ACCDH844017DH844018
length1,032934
definitionDH844017|Mus musculus domesticus DNA, BAC clone: B6Ng01-007H06, 5' end.DH844018|Mus musculus domesticus DNA, BAC clone: B6Ng01-007H06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,584,335 - 100,585,363)(100,729,592 - 100,730,546)
sequence
gaattcattgccagcgaattaaaaagagtcatctgctgtttctctgcctc
ttcgctctcctgccgttcacccagaacaataacaggggtgtggcaaactc
agccacaactgtctacctgtgcctttccaagatgcctgctttggcagttt
gtggaatgatttctgggcttcagaaatatgggaaagatgcctgtagttca
cagtcagctctgccctaatgactgaaggaactccttggtcagtggaaaga
gtcctaaaaggaagaactagatgtcattatgtgtcctccacatagggcag
agtgtcacatagtagaagctttacatgagtcatattttttttttgccagc
ttaatagatttttcccttttcccatctctacctcacaccctccccctctt
ctcccctcacctctggtaccgggaattgagctcagggtcccatgtatgct
attcatactttctgaatcagaacccctagatggtctaaaataagttctaa
gaagcataaatactctttgatgattaaaataatacagagtctgagaacta
aacatacctatgtcagcactatgtctttagaataagaagaattttataaa
tctgaagtgaagagaacatagcacacttctcttttgtactctctctaacc
ttaaagtacaactcaggattggttttatgggcatgtgaaatgtgtacaca
tgcttaaatgacatttttgtggatcaggaggaaatgaatagaatcacggt
catagtgtgtctgaatgtggcttcctggaggctggggatgttttctctat
gcacaattgagttcagaggttatctacacataaacatctcttccatggga
gctaagaagaaagttccctgctgaaaaagctacactagcctacttgaatg
gacagactcccccttgggagccttagaaaagaagaagctatgttgaaatt
tataacagtatccgcctgtctgatggtgttaactaagagaagcataaccc
atcctctgagaccctccattgtggtggaatta
gaattcctcccaaaggtgaaggcaaatcaaatacaaatgtccccatcagg
aacagaaggaaacttcccaaaggaaccgaacactggtctaaaggagccat
ttctaggtggacctggtgatgcacatctttaaacccggcagaggcaagtg
catctctctaagtttaaggccaatctgttccacatagttccaggtcagcc
agagctgtgttaagcagtgagaccctgtcttaacaaaagcaaaggagaca
aacccgaacaaaccccatcaacctaccaaatcctttcaactaccaatggc
atagagtttgtgtgaaccaaaatggtaaggaggaaaggaaggtgtgactg
ccttcccactcctctgtaacccaccacacagcagccaagcaccaggagct
gcggtgtgagcctctgagcaggtagattctgccttgctctagtcagtgcc
gttatctcctgtgggcacagccaggttctaacttccccaaagcaaagcct
gatcctgaaggttcttgggagcttctattttctgaagtacaaaaggttca
agcctacccccagtattaataactgcagcctgcccagaccatgagaaaga
aaggggcaaggcagggagccactgccttttaaaccagtataccttgccga
acaagcctcatttagtttctctttttgacacacggtctcatatagcccag
cctgccatcaaacttgctatgcatccgaagagttctccaacttctgaccc
acctgtgagtactaggattaaaagcatttgtgccaggcctcagttttatg
tgtgccagcaacagacccagactctgtgcagctaagcaagcatctgctat
gcactaaccccaggaccgcacgcacactctttaattcagtccctggcatg
ctcctcaatacatgagaaatgctcctactttctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_100584335_100585363
seq2: B6Ng01-007H06.b_46_1077

seq1  GAATTCATTGCCAGCGAATTAAAAAGAGTCATCTGCTGTTTCTCTGCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGCCAGCGAATTAAAAAGAGTCATCTGCTGTTTCTCTGCCTC  50

seq1  TTCGCTCTCCTGCCGTTCACCCAGAACAATAACAGGGGTGTGGCAAACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCTCTCCTGCCGTTCACCCAGAACAATAACAGGGGTGTGGCAAACTC  100

seq1  AGCCACAACTGTCTACCTGTGCCTTTCCAAGATGCCTGCTTTGGCAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAACTGTCTACCTGTGCCTTTCCAAGATGCCTGCTTTGGCAGTTT  150

seq1  GTGGAATGATTTCTGGGCTTCAGAAATATGGGAAAGATGCCTGTAGTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATGATTTCTGGGCTTCAGAAATATGGGAAAGATGCCTGTAGTTCA  200

seq1  CAGTCAGCTCTGCCCTAATGACTGAAGGAACTCCTTGGTCAGTGGAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGCTCTGCCCTAATGACTGAAGGAACTCCTTGGTCAGTGGAAAGA  250

seq1  GTCCTAAAAGGAAGAACTAGATGTCATTATGTGTCCTCCACATAGGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAAAAGGAAGAACTAGATGTCATTATGTGTCCTCCACATAGGGCAG  300

seq1  AGTGTCACATAGTAGAAGCTTTACATGAGTCATATTTTTTTTTTGCCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCACATAGTAGAAGCTTTACATGAGTCATATTTTTTTTTTGCCAGC  350

seq1  TTAATAGATTTTTCCCTTTTCCCATCTCTACCTCACACCCTCCCCCTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGATTTTTCCCTTTTCCCATCTCTACCTCACACCCTCCCCCTCTT  400

seq1  CTCCCCTCACCTCTGGTACCGGGAATTGAGCTCAGGGTCCCATGTATGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTCACCTCTGGTACCGGGAATTGAGCTCAGGGTCCCATGTATGCT  450

seq1  ATTCATACTTTCTGAATCAGAACCCCTAGATGGTCTAAAATAAGTTCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATACTTTCTGAATCAGAACCCCTAGATGGTCTAAAATAAGTTCTAA  500

seq1  GAAGCATAAATACTCTTTGATGATTAAAATAATACAGAGTCTGAGAACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATAAATACTCTTTGATGATTAAAATAATACAGAGTCTGAGAACTA  550

seq1  AACATACCTATGTCAGCACTATGTCTTTAGAATAAGAAGAATTTTATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATACCTATGTCAGCACTATGTCTTTAGAATAAGAAGAATTTTATAAA  600

seq1  TCTGAAGTGAAGAGAACATAGCACACTTCTCTTTTGTACTCTCTCTAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGTGAAGAGAACATAGCACACTTCTCTTTTGTACTCTCTCTAACC  650

seq1  TTAAAGTACAACTCAGGATTGGTTTTATGGGCATGTGAAATGTGTACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTACAACTCAGGATTGGTTTTATGGGCATGTGAAATGTGTACACA  700

seq1  TGCTTAAATGACATTTTTGTGGATCAGGAGGAAATGAATAGAATCACGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGCTTAAATGACATTTTTGTGGATCAGGAGGAAATGAATAGAATCACGGT  750

seq1  CATAGTGTGTCTGAATGTGGCTTCCTGGAGGCTGGGGATGGTTTCTCTAT  800
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CATAGTGTGTCTGAATGTGGCTTCCTGGAGGCTGGGGATGTTTTCTCTAT  800

seq1  GCACAATTGAGTTCAGAGGTTATCTACACATAAACATCTCTT-CATGGGA  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GCACAATTGAGTTCAGAGGTTATCTACACATAAACATCTCTTCCATGGGA  850

seq1  GCTAAGAAGAAAG-TCCCTGCAGAAAAAGCATACACTAGCCTACTTGATG  898
      ||||||||||||| ||||||| |||||||| |||||||||||||||||  
seq2  GCTAAGAAGAAAGTTCCCTGCTGAAAAAGC-TACACTAGCCTACTTGAAT  899

seq1  GAACAGACAACACACTTGGAGGCCTAGGAAAAG-AGAAGC-ATGTTGAAA  946
      | ||||||  | | |||||  ||||  |||||| |||||| |||||||||
seq2  GGACAGAC-TCCCCCTTGGGAGCCTTAGAAAAGAAGAAGCTATGTTGAAA  948

seq1  TTAATAACAGTA-CCGGCTGTCTGATGGTGTTAACAGAGAG-AGCATAGA  994
      || ||||||||| ||| ||||||||||||||||||  |||| |||||| |
seq2  TTTATAACAGTATCCGCCTGTCTGATGGTGTTAACTAAGAGAAGCATA-A  997

seq1  CCAAGCCACTGAGACCCACCACTGTGGTGGAATTA  1029
      || | || ||||||||| ||| |||||||||||||
seq2  CCCATCCTCTGAGACCCTCCATTGTGGTGGAATTA  1032

seq1: chr3_100729592_100730546
seq2: B6Ng01-007H06.g_68_1001 (reverse)

seq1  GAGAAGGTAGGGAAGCATTTCTCAATGGTATTGAGAGAGCAGTGCCCAGG  50
      ||||| |||||  |||||||||||   |||||||| ||||| || |||||
seq2  GAGAAAGTAGG--AGCATTTCTCA--TGTATTGAG-GAGCA-TG-CCAGG  43

seq1  GACCTGACATTTAAAGAGTTGTGTCGTGCTGTCCTGGGGGTATAGTGCCA  100
      || |||  | |||||||| |||| ||||| |||||||||   ||||||  
seq2  GA-CTG--AATTAAAGAG-TGTG-CGTGCGGTCCTGGGG--TTAGTGC--  84

seq1  TTGGCAGAATGCTTGCCTAGCTTGCACAGAGTCTGGGTCTGGTTGCTGGC  150
       | |||| |||||||| |||| |||||||||||||||||| |||||||||
seq2  ATAGCAG-ATGCTTGCTTAGC-TGCACAGAGTCTGGGTCT-GTTGCTGGC  131

seq1  ACCACATAAAACTGA-GCCTGGCCACATATGCTTTTAATCCTAGTACTCA  199
      | ||||||||||||| |||||| |||| ||||||||||||||||||||||
seq2  A-CACATAAAACTGAGGCCTGG-CACAAATGCTTTTAATCCTAGTACTCA  179

seq1  CAGGTGGGTCAGAAGTTGGAGGACCTCTTCGGATGCATAGCAAGTTTGAT  249
      |||||||||||||||||||| || ||||||||||||||||||||||||||
seq2  CAGGTGGGTCAGAAGTTGGA-GAACTCTTCGGATGCATAGCAAGTTTGAT  228

seq1  GGCAGGCTGGGCTATATGAGACCGTGTGTCAAAAAGAGAAACTAAATGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCTGGGCTATATGAGACCGTGTGTCAAAAAGAGAAACTAAATGAG  278

seq1  GCTTGTTCGGCAAGGTATACTGGTTTAAAAGGCAGTGGCTCCCTGCCTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTCGGCAAGGTATACTGGTTTAAAAGGCAGTGGCTCCCTGCCTTG  328

seq1  CCCCTTTCTTTCTCATGGTCTGGGCAGGCTGCAGTTATTAATACTGGGGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTCTTTCTCATGGTCTGGGCAGGCTGCAGTTATTAATACTGGGGG  378

seq1  TAGGCTTGAACCTTTTGTACTTCAGAAAATAGAAGCTCCCAAGAACCTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTTGAACCTTTTGTACTTCAGAAAATAGAAGCTCCCAAGAACCTTC  428

seq1  AGGATCAGGCTTTGCTTTGGGGAAGTTAGAACCTGGCTGTGCCCACAGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCAGGCTTTGCTTTGGGGAAGTTAGAACCTGGCTGTGCCCACAGGA  478

seq1  GATAACGGCACTGACTAGAGCAAGGCAGAATCTACCTGCTCAGAGGCTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACGGCACTGACTAGAGCAAGGCAGAATCTACCTGCTCAGAGGCTCA  528

seq1  CACCGCAGCTCCTGGTGCTTGGCTGCTGTGTGGTGGGTTACAGAGGAGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGCAGCTCCTGGTGCTTGGCTGCTGTGTGGTGGGTTACAGAGGAGTG  578

seq1  GGAAGGCAGTCACACCTTCCTTTCCTCCTTACCATTTTGGTTCACACAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCAGTCACACCTTCCTTTCCTCCTTACCATTTTGGTTCACACAAA  628

seq1  CTCTATGCCATTGGTAGTTGAAAGGATTTGGTAGGTTGATGGGGTTTGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGCCATTGGTAGTTGAAAGGATTTGGTAGGTTGATGGGGTTTGTT  678

seq1  CGGGTTTGTCTCCTTTGCTTTTGTTAAGACAGGGTCTCACTGCTTAACAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTTTGTCTCCTTTGCTTTTGTTAAGACAGGGTCTCACTGCTTAACAC  728

seq1  AGCTCTGGCTGACCTGGAACTATGTGGAACAGATTGGCCTTAAACTTAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGGCTGACCTGGAACTATGTGGAACAGATTGGCCTTAAACTTAGA  778

seq1  GAGATGCACTTGCCTCTGCCGGGTTTAAAGATGTGCATCACCAGGTCCAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCACTTGCCTCTGCCGGGTTTAAAGATGTGCATCACCAGGTCCAC  828

seq1  CTAGAAATGGCTCCTTTAGACCAGTGTTCGGTTCCTTTGGGAAGTTTCCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAATGGCTCCTTTAGACCAGTGTTCGGTTCCTTTGGGAAGTTTCCT  878

seq1  TCTGTTCCTGATGGGGACATTTGTATTTGATTTGCCTTCACCTTTGGGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCCTGATGGGGACATTTGTATTTGATTTGCCTTCACCTTTGGGAG  928

seq1  GAATTC  955
      ||||||
seq2  GAATTC  934