BAC Information

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BAC

Clone NameB6Ng01-007H09
Chromosome3 (Build37)
Map Location 82,104,364 - 82,246,897
singlet/doubletdoublet
Overlap geneMtap9
Upstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3
Downstream geneNpy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007H09.bB6Ng01-007H09.g
ACCDH844023DH844024
length958984
definitionDH844023|Mus musculus domesticus DNA, BAC clone: B6Ng01-007H09, 5' end.DH844024|Mus musculus domesticus DNA, BAC clone: B6Ng01-007H09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,246,366 - 82,246,897)(82,104,364 - 82,105,336)
sequence
gaattccatgatctactaggagttagttatttcaaagtctataaaagttt
ataactgttaatgaatgtcaaattgccacagtgacatcttttaaaaatac
tatctttttgttgcattaatttgcaatgttatcaaaagcaattggtaatt
ttcctgggttccctattctgctccaatgacctacatgtatacttctttaa
ctgtatgtacggtcacaatcattaccatgcaggtttttgctagtctttta
aaacacaatgttcctagtatatcttcctaaagtaatatgacaactgtctt
ttaaaaaaagataatttcatagatctttttatttctcttggaggttgggg
tttgttgattatagatgcaatttggcaaatggatgtaactcattttgcag
aatttggaaaatatatacatgtttgtattgacacttgttcaggatttctt
ttttgcttctctacataagggagaggcctctagaaatgtaattgaccatt
ttttacaagcctttaatgctatgggattgcctaaactcattaagacagat
aatgggccatcttatgccaatttttcttcattttgtaaggaatttggtat
caaacatagaactggaattccttataagcccatgggacaaggaattgttg
aatgtgctcatcgcactctgaaaaactggctttttaaaatgaaacagggg
cagctttaccccccaaagtcaccaaaaacacatctttcttttgtcttgtt
cattttaaatttcttgcaaactgatattaaaggtcagtctgcagcagatc
accactggcatccagttacttccagttcttatgccatggttagatggcgg
gacccattaactaatatgtggaatggtccagaccccgttttaatctgggg
aagaggttctgtctgtgttttttcccaaaagatgacagagcacgatggct
gcatgaaa
gaattcttctctgaggaattctcttgattaggtcaggtgaggaggcccat
cctgattatgggtggtatacttcatggctggcctccagcactggaaagga
ggttgctatggttccagtcaacaagtttgttatatcagccacaggaagcc
tatgtgtaaccattgaggacacaagtagagctctacaaaagaggtgcctt
gaataggtgatggtgtctcctcagatagaaatgaaggctgagaaggatgg
ctcagagctaggaaagcactacaggaaatcactgatgtgagtaataccaa
accaggtggcatctcctatctgttattgctgcaaattacaggagaagtta
aaagcaaagacaggctcttcacaggtagtgatggataaagaatatgctat
agacacagatgggctgtgtgcctgtggaattcagggatgctcaccctcag
ttatgctatcctcacatagcatatttccttttttattagatattttttat
ttacatttcaaatgctatcccctttcctagtttcccttcagaaaaccccc
tatcccctcccccctcctcctgctcaccaacccacccactcctgcttcct
gggcctggcattcccctatactggggcacagaaccatcagaagaccaaag
gtctctcctcccattgatgatcaactgggccatcctctgctacatatgca
gctagagccatgagtcccatcaggtgttttctctgttgttgatttagtcc
caggaagctctgggggtactggttagttcatattgatgttcctcccttgt
ggctacaaacaccttcagcaccttgggtactttctctaactccttcattg
ggggtcctgtgttccatccaatggatggctctgaacatccacttcggtaa
ttgtcagcactgcagagcctcacaggaaacaactataatcagtttcctgt
cagcaaatcttgttgcatctgcaatagtatctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_82246366_82246897
seq2: B6Ng01-007H09.b_45_576 (reverse)

seq1  AGGCAATCCCATAGCATTAAAGGCTTGTAAAAAATGGTCAATTACATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAATCCCATAGCATTAAAGGCTTGTAAAAAATGGTCAATTACATTTC  50

seq1  TAGAGGCCTCTCCCTTATGTAGAGAAGCAAAAAAGAAATCCTGAACAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGCCTCTCCCTTATGTAGAGAAGCAAAAAAGAAATCCTGAACAAGT  100

seq1  GTCAATACAAACATGTATATATTTTCCAAATTCTGCAAAATGAGTTACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATACAAACATGTATATATTTTCCAAATTCTGCAAAATGAGTTACAT  150

seq1  CCATTTGCCAAATTGCATCTATAATCAACAAACCCCAACCTCCAAGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGCCAAATTGCATCTATAATCAACAAACCCCAACCTCCAAGAGAA  200

seq1  ATAAAAAGATCTATGAAATTATCTTTTTTTAAAAGACAGTTGTCATATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGATCTATGAAATTATCTTTTTTTAAAAGACAGTTGTCATATTA  250

seq1  CTTTAGGAAGATATACTAGGAACATTGTGTTTTAAAAGACTAGCAAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGAAGATATACTAGGAACATTGTGTTTTAAAAGACTAGCAAAAAC  300

seq1  CTGCATGGTAATGATTGTGACCGTACATACAGTTAAAGAAGTATACATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGGTAATGATTGTGACCGTACATACAGTTAAAGAAGTATACATGT  350

seq1  AGGTCATTGGAGCAGAATAGGGAACCCAGGAAAATTACCAATTGCTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATTGGAGCAGAATAGGGAACCCAGGAAAATTACCAATTGCTTTTG  400

seq1  ATAACATTGCAAATTAATGCAACAAAAAGATAGTATTTTTAAAAGATGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATTGCAAATTAATGCAACAAAAAGATAGTATTTTTAAAAGATGTC  450

seq1  ACTGTGGCAATTTGACATTCATTAACAGTTATAAACTTTTATAGACTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGCAATTTGACATTCATTAACAGTTATAAACTTTTATAGACTTTG  500

seq1  AAATAACTAACTCCTAGTAGATCATGGAATTC  532
      ||||||||||||||||||||||||||||||||
seq2  AAATAACTAACTCCTAGTAGATCATGGAATTC  532

seq1: chr3_82104364_82105336
seq2: B6Ng01-007H09.g_66_1036

seq1  GAATTCTTCTCTGAGGAATTCTCTTGATTAGGTCAGGTGAGGAGGCCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTCTGAGGAATTCTCTTGATTAGGTCAGGTGAGGAGGCCCAT  50

seq1  CCTGATTATGGGTGGTATACTTCATGGCTGGCCTCCAGCACTGGAAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTATGGGTGGTATACTTCATGGCTGGCCTCCAGCACTGGAAAGGA  100

seq1  GGTTGCTATGGTTCCAGTCAACAAGTTTGTTATATCAGCCACAGGAAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTATGGTTCCAGTCAACAAGTTTGTTATATCAGCCACAGGAAGCC  150

seq1  TATGTGTAACCATTGAGGACACAAGTAGAGCTCTACAAAAGAGGTGCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTAACCATTGAGGACACAAGTAGAGCTCTACAAAAGAGGTGCCTT  200

seq1  GAATAGGTGATGGTGTCTCCTCAGATAGAAATGAAGGCTGAGAAGGATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGGTGATGGTGTCTCCTCAGATAGAAATGAAGGCTGAGAAGGATGG  250

seq1  CTCAGAGCTAGGAAAGCACTACAGGAAATCACTGATGTGAGTAATACCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGCTAGGAAAGCACTACAGGAAATCACTGATGTGAGTAATACCAA  300

seq1  ACCAGGTGGCATCTCCTATCTGTTATTGCTGCAAATTACAGGAGAAGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTGGCATCTCCTATCTGTTATTGCTGCAAATTACAGGAGAAGTTA  350

seq1  AAAGCAAAGACAGGCTCTTCACAGGTAGTGATGGATAAAGAATATGCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAAGACAGGCTCTTCACAGGTAGTGATGGATAAAGAATATGCTAT  400

seq1  AGACACAGATGGGCTGTGTGCCTGTGGAATTCAGGGATGCTCACCCTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAGATGGGCTGTGTGCCTGTGGAATTCAGGGATGCTCACCCTCAG  450

seq1  TTATGCTATCCTCACATAGCATATTTCCTTTTTTATTAGATATTTTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTATCCTCACATAGCATATTTCCTTTTTTATTAGATATTTTTTAT  500

seq1  TTACATTTCAAATGCTATCCCCTTTCCTAGTTTCCCTTCAGAAAACCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTCAAATGCTATCCCCTTTCCTAGTTTCCCTTCAGAAAACCCCC  550

seq1  TATCCCCTCCCCCCTCCTCCTGCTCACCAACCCACCCACTCCTGCTTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCCTCCCCCCTCCTCCTGCTCACCAACCCACCCACTCCTGCTTCCT  600

seq1  GGGCCTGGCATTCCCCTATACTGGGGCACAGAACCATCAGAAGACCAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGGCATTCCCCTATACTGGGGCACAGAACCATCAGAAGACCAAAG  650

seq1  GTCTCTCCTCCCATTGATGATCAACTGGGCCATCCTCTGCTACATATGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCCTCCCATTGATGATCAACTGGGCCATCCTCTGCTACATATGCA  700

seq1  GCTAGAGCCATGAGTCCCATCAGGTGTTTTCTCTGTTGTTGATTTAGTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGCCATGAGTCCCATCAGGTGTTTTCTCTGTTGTTGATTTAGTCC  750

seq1  CAGGAAGCTCTGGGGGTACTGGTTAGTTCATATTGATGTTCCT-CCTTGT  799
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAGGAAGCTCTGGGGGTACTGGTTAGTTCATATTGATGTTCCTCCCTTGT  800

seq1  GGCTACAAACACCTTCAGCACCTTGGGTACTTTCTCTAACTCCTTCATTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACAAACACCTTCAGCACCTTGGGTACTTTCTCTAACTCCTTCATTG  850

seq1  GGGGTCCTGTGTTCCATCCAATGGATGGCTCTGAACATCCACTTCGGTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGGGTCCTGTGTTCCATCCAATGGATGGCTCTGAACATCCACTTCGGTAA  900

seq1  TTGTCAGGCACTGGCAGAGCCTCACAGGAAACAACTAT-ATCAGGTTCCT  948
      |||||| ||||| ||||||||||||||||||||||||| ||||| |||||
seq2  TTGTCA-GCACT-GCAGAGCCTCACAGGAAACAACTATAATCAGTTTCCT  948

seq1  GTCAGCAAAATCTTGTTGGCATCTG  973
      |||||| |||||||||| |||||||
seq2  GTCAGC-AAATCTTGTT-GCATCTG  971