BAC Information

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BAC

Clone NameB6Ng01-007K03
Chromosome3 (Build37)
Map Location 140,984,438 - 141,188,489
singlet/doubletdoublet
Overlap geneUnc5c, LOC100039923
Upstream geneLOC621343, 4930590L14Rik, Pdha2
Downstream geneBmpr1b, Gabarapl2-ps3, Pdlim5, Gbp5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007K03.bB6Ng01-007K03.g
ACCDH844139DH844140
length659502
definitionDH844139|Mus musculus domesticus DNA, BAC clone: B6Ng01-007K03, 5' end.DH844140|Mus musculus domesticus DNA, BAC clone: B6Ng01-007K03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,984,438 - 140,985,095)(141,187,982 - 141,188,489)
sequence
gaattcattacagatacagaattagaacaaaggtcataaaatttgcaaaa
ctaatccttgcactgaagaagttcaaagctgtttgagacagatgaagaaa
tcaacagtagaaacagttataaaagcttcaaaactgataagcttctatat
cataaggagatggtaatttagaatggagtttcacagctttgggtataata
gtatttcaggaatattgcttttgtgggtaagacagtaagtgcacagcttt
gtaagtgtcagggttccaaggaaggatggaaaacagacccgttattccta
gagataatacctatttcatttacatacagaagaaaagagaaagagtcaag
aagaaaagtatagagaatggaagaaaggatgaaggagagaggaggaggat
ggaacaaggggaaacctggtgcaactatggagcaaataactttggactac
ctggagcagtatatatagaaaaggaaagaaaggtcgaggaagaaggcttc
atttactctgcagaactactctatttgaactgttaaggtagcagaagggt
atgggtgacttttgaggccagaaagtaataatattcttctttataatttt
ctcaactgctataatcacaatgtttagggggagagagagagagagagaga
gagagagag
acttaagcttagacatgacagtcactatgtaagatgtttccagaaattgg
aaaccatgtgtctgaagttatctcccaattataaaacactaaaatgagct
cttttccaaacaagaattttattagcgcattacccaagacatctctctga
ttcaccctcaaacagaaatagctactcaaatatcaatatgttcaaacact
ataatgatgtcactgctggcattgttcagttaacatttatgtggcaaaat
aatatgcctttatagccaataaatgaaataagttgaagaactgaacaatt
agtatatatacatatatgtatatatctttgttccacacatcatatataaa
atataaggaagtgttagttatccacaagaaaattatatataatgcagaat
gttttcatctaataatatttacttaattactagtaatcatatgaaattta
tcagaaagttttatttgtttgttatgtgtgtatatgtttgtgtgtgtatg
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_140984438_140985095
seq2: B6Ng01-007K03.b_44_702

seq1  GAATTCATTACAGATACAGAATTAGAACAAAGGTCATAAAATTTGCAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTACAGATACAGAATTAGAACAAAGGTCATAAAATTTGCAAAA  50

seq1  CTAATCCTTGCACTGAAGAAGTTCAAAGCTGTTTGAGACAGATGAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCCTTGCACTGAAGAAGTTCAAAGCTGTTTGAGACAGATGAAGAAA  100

seq1  TCAACAGTAGAAACAGTTATAAAAGCTTCAAAACTGATAAGCTTCTATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGTAGAAACAGTTATAAAAGCTTCAAAACTGATAAGCTTCTATAT  150

seq1  CATAAGGAGATGGTAATTTAGAATGGAGTTTCACAGCTTTGGGTATAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGAGATGGTAATTTAGAATGGAGTTTCACAGCTTTGGGTATAATA  200

seq1  GTATTTCAGGAATATTGCTTTTGTGGGTAAGACAGTAAGTGCACAGCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCAGGAATATTGCTTTTGTGGGTAAGACAGTAAGTGCACAGCTTT  250

seq1  GTAAGTGTCAGGGTTCCAAGGAAGGATGGAAAACAGACCCGTTATTCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTGTCAGGGTTCCAAGGAAGGATGGAAAACAGACCCGTTATTCCTA  300

seq1  GAGATAATACCTATTTCATTTACATACAGAAGAAAAGAGAAAGAGTCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAATACCTATTTCATTTACATACAGAAGAAAAGAGAAAGAGTCAAG  350

seq1  AAGAAAAGTATAGAGAATGGAAGAAAGGATGAAGGAGAGAGGAGGAGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGTATAGAGAATGGAAGAAAGGATGAAGGAGAGAGGAGGAGGAT  400

seq1  GGAACAAGGGGAAACCTGGTGCAACTATGGAGCAAATAACTTTGGACTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAAGGGGAAACCTGGTGCAACTATGGAGCAAATAACTTTGGACTAC  450

seq1  CTGGAGCAGTATATATAGAAAAGGAAAGAAAGGTCGAGGAAGAAGGCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCAGTATATATAGAAAAGGAAAGAAAGGTCGAGGAAGAAGGCTTC  500

seq1  ATTTACTCTGCAGAACTACTCTATTTGAACTGTTAAGGTAGCAGAAGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTCTGCAGAACTACTCTATTTGAACTGTTAAGGTAGCAGAAGGGT  550

seq1  ATGGGTGACTTTTGAGGCCAGAAAGTAATAATATTCTTCTTTATAATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTGACTTTTGAGGCCAGAAAGTAATAATATTCTTCTTTATAATTTT  600

seq1  CTCAACTGCTATAATCACAATGTTTA-GGGGAGAGAGAGAGAGAGAGAGA  649
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTCAACTGCTATAATCACAATGTTTAGGGGGAGAGAGAGAGAGAGAGAGA  650

seq1  GAGAGAGAG  658
      |||||||||
seq2  GAGAGAGAG  659

seq1: chr3_141187982_141188489
seq2: B6Ng01-007K03.g_69_576 (reverse)

seq1  CACATACACACACAAACATATACACACATAACAAACAAATAAAACTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACACACACAAACATATACACACATAACAAACAAATAAAACTTTCT  50

seq1  GATAAATTTCATATGATTACTAGTAATTAAGTAAATATTATTAGATGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATTTCATATGATTACTAGTAATTAAGTAAATATTATTAGATGAAA  100

seq1  ACATTCTGCATTATATATAATTTTCTTGTGGATAACTAACACTTCCTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTGCATTATATATAATTTTCTTGTGGATAACTAACACTTCCTTAT  150

seq1  ATTTTATATATGATGTGTGGAACAAAGATATATACATATATGTATATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATATATGATGTGTGGAACAAAGATATATACATATATGTATATATA  200

seq1  CTAATTGTTCAGTTCTTCAACTTATTTCATTTATTGGCTATAAAGGCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGTTCAGTTCTTCAACTTATTTCATTTATTGGCTATAAAGGCATA  250

seq1  TTATTTTGCCACATAAATGTTAACTGAACAATGCCAGCAGTGACATCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGCCACATAAATGTTAACTGAACAATGCCAGCAGTGACATCATT  300

seq1  ATAGTGTTTGAACATATTGATATTTGAGTAGCTATTTCTGTTTGAGGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTTTGAACATATTGATATTTGAGTAGCTATTTCTGTTTGAGGGTG  350

seq1  AATCAGAGAGATGTCTTGGGTAATGCGCTAATAAAATTCTTGTTTGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGAGAGATGTCTTGGGTAATGCGCTAATAAAATTCTTGTTTGGAAA  400

seq1  AGAGCTCATTTTAGTGTTTTATAATTGGGAGATAACTTCAGACACATGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCATTTTAGTGTTTTATAATTGGGAGATAACTTCAGACACATGGT  450

seq1  TTCCAATTTCTGGAAACATCTTACATAGTGACTGTCATGTCTAAGCTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATTTCTGGAAACATCTTACATAGTGACTGTCATGTCTAAGCTTAA  500

seq1  GTGAATTC  508
      ||||||||
seq2  GTGAATTC  508