BAC Information

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BAC

Clone NameB6Ng01-007L04
Chromosome3 (Build37)
Map Location 115,907,553 - 116,078,906
singlet/doubletdoublet
Overlap geneGpr88, Cdc14a
Upstream geneEG546808, Edg1, Dph5, LOC626061, Slc30a7, Extl2, Vcam1
Downstream geneRtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007L04.bB6Ng01-007L04.g
ACCDH844188DH844189
length953819
definitionDH844188|Mus musculus domesticus DNA, BAC clone: B6Ng01-007L04, 5' end.DH844189|Mus musculus domesticus DNA, BAC clone: B6Ng01-007L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,907,553 - 115,908,501)(116,078,093 - 116,078,906)
sequence
gaattcacacattgtttttaacaatatctgtatcggtcaggaaaaggagt
gaataaacctaggagttaaacttatttcagagtgaatggtctggtactta
ggggcgtggcatggcagacagagtaagtgacatcagagcttccttctgtc
ctggtcatttcacccgattcagaagtggccgtctacgtggcattttatgg
ccacagatgatttcccacgtctgcacagatgataccaaatggcacctcaa
gggacacgggacatctggcatgtggcaccaacaacagcagaggttcatga
gcaagaaaacagagcagacatgaagaaccaagatggctgagcgtgggaaa
ggtgtggagaattggttttagttttcgataaaagatgagtctagagtgta
agtagttatacacacaaatttatcgtagttataaacactatgggtcactg
gttagcgctgcatgaggggaatgcaaatactctttgtttttctcttgcac
tcagctgtactctgagagttttcctaattaatctttatttagtggtgtaa
gtcagtacacttctccctctcctgttgaattttctttctcttcccactcg
ataaatgtaacatcgccattctctctttgcatccaagtggaaggaactca
gactcacttgatacggtgtctgagaggtgctgggattgactgaaggccac
aggaaaaaaagaaaaattccatttttttttctagaagaatttttaaaggc
ccctgaaggtttatataacaatctggcaagtccccaggctgttctatttt
acaacatctgttatcattggtggtcataaacattgcttttttttttttcc
caagcgaaagagaagtatgcagtacttgcttgattaattaacattttcta
aagccttgaacagataaagtcttatccaagccccttgggaggggattgag
ggg
gaattcctagtagctacaaggaaggaagatgtattttctataaagtaagt
gtgtggtaaggtaggtctgtggttgcctttacttgtctgtgttctcgttt
gtggaaattagtgagcgatggcatgtaggaacctgcttacttcaaaacaa
gacctttgcatgcttaagagggatcaattcttttctcttcttgaaggaca
atcttgtcatgtggcatttgtttgcaaagttcaggctaatgtacagacaa
atgaccacaggatctgttctgtaaacacccacctagtggggcaagctctt
gtttctcctgcattctccaagcaacaactctttggtaaacactggaagag
aacaaccagttccttgtttgagtccattgttagttttctcttcttgagta
agttcaaagagaaggcgcttacacattaccaggcaggagctgtgagacct
gagttgtatgcagtgtggctctgccttgaaagtttgccttaacatctccc
ccgcaaactcctcaaaacccagagaaaaccaggagaaagatatttgaaaa
atgttttgaaattgcttattatttttgagataaggtcttgtgatgtcacc
ccaggctggcttcaaacctgagctccctgtgtcttgatctctgagtgctg
ggtgttacaggcacactctgctacattccactaaaatttaactttagaga
acactgttgttgtttatgtttccttggtacatgatctgggttactgaatt
aacactgagagcctggtttaccttctttctttcctggcagaatctcaggc
atggttttgatggaaaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_115907553_115908501
seq2: B6Ng01-007L04.b_45_997

seq1  GAATTCACACATTGTTTTTAACAATATCTGTATCGGTCAGGAAAAGGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACATTGTTTTTAACAATATCTGTATCGGTCAGGAAAAGGAGT  50

seq1  GAATAAACCTAGGAGTTAAACTTATTTCAGAGTGAATGGTCTGGTACTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAACCTAGGAGTTAAACTTATTTCAGAGTGAATGGTCTGGTACTTA  100

seq1  GGGGCGTGGCATGGCAGACAGAGTAAGTGACATCAGAGCTTCCTTCTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGTGGCATGGCAGACAGAGTAAGTGACATCAGAGCTTCCTTCTGTC  150

seq1  CTGGTCATTTCACCCGATTCAGAAGTGGCCGTCTACGTGGCATTTTATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCATTTCACCCGATTCAGAAGTGGCCGTCTACGTGGCATTTTATGG  200

seq1  CCACAGATGATTTCCCACGTCTGCACAGATGATACCAAATGGCACCTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGATGATTTCCCACGTCTGCACAGATGATACCAAATGGCACCTCAA  250

seq1  GGGACACGGGACATCTGGCATGTGGCACCAACAACAGCAGAGGTTCATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACACGGGACATCTGGCATGTGGCACCAACAACAGCAGAGGTTCATGA  300

seq1  GCAAGAAAACAGAGCAGACATGAAGAACCAAGATGGCTGAGCGTGGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAAACAGAGCAGACATGAAGAACCAAGATGGCTGAGCGTGGGAAA  350

seq1  GGTGTGGAGAATTGGTTTTAGTTTTCGATAAAAGATGAGTCTAGAGTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGAGAATTGGTTTTAGTTTTCGATAAAAGATGAGTCTAGAGTGTA  400

seq1  AGTAGTTATACACACAAATTTATCGTAGTTATAAACACTATGGGTCACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTATACACACAAATTTATCGTAGTTATAAACACTATGGGTCACTG  450

seq1  GTTAGCGCTGCATGAGGGGAATGCAAATACTCTTTGTTTTTCTCTTGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCGCTGCATGAGGGGAATGCAAATACTCTTTGTTTTTCTCTTGCAC  500

seq1  TCAGCTGTACTCTGAGAGTTTTCCTAATTAATCTTTATTTAGTGGTGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGTACTCTGAGAGTTTTCCTAATTAATCTTTATTTAGTGGTGTAA  550

seq1  GTCAGTACACTTCTCCCTCTCCTGTTGAATTTTCTTTCTCTTCCCACTCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTACACTTCTCCCTCTCCTGTTGAATTTTCTTTCTCTTCCCACTCG  600

seq1  ATAAATGTAACATCGCCATTCTCTCTTTGCATCCAAGTGGAAGGAACTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTAACATCGCCATTCTCTCTTTGCATCCAAGTGGAAGGAACTCA  650

seq1  GACTCACTTGATACGGTGTCTGAGAGGTGCTGGGATTGACTGAAGGCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCACTTGATACGGTGTCTGAGAGGTGCTGGGATTGACTGAAGGCCAC  700

seq1  AGGAAAAAAAGAAAAATTCCATTTTTTTTTCTAGAAGAATTTTTAAAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAAAGAAAAATTCCATTTTTTTTTCTAGAAGAATTTTTAAAGGC  750

seq1  CCCTGAAGGTTTATATAACAATCTGGCAAGTCCCCAGGCTGTTCTA-TTT  799
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCCTGAAGGTTTATATAACAATCTGGCAAGTCCCCAGGCTGTTCTATTTT  800

seq1  ACAACATCTGTTATCATTGGTGGTCATAAACATTGC-TTTTTTTTTTTCC  848
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACAACATCTGTTATCATTGGTGGTCATAAACATTGCTTTTTTTTTTTTCC  850

seq1  CAAGCGAAAAGAGAAGTATGCAGTACTTGC-TGATTAATTCACATATCTA  897
      |||||| ||||||||||||||||||||||| ||||||||| |||| |   
seq2  CAAGCG-AAAGAGAAGTATGCAGTACTTGCTTGATTAATTAACATTTTCT  899

seq1  AAAGCCTTGAACAGATAAAGTC-TATCCAAGCCCCTTGGGA-GGGATTGA  945
      |||||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  AAAGCCTTGAACAGATAAAGTCTTATCCAAGCCCCTTGGGAGGGGATTGA  949

seq1  GGGG  949
      ||||
seq2  GGGG  953

seq1: chr3_116078093_116078906
seq2: B6Ng01-007L04.g_68_886 (reverse)

seq1  TGTTTTCCATC-AAACCATGGCCTGAGA-TCTGCCAGGAATG-GAGAAGG  47
      ||||||||||| ||||||| |||||||| ||||||||||| |  ||||||
seq2  TGTTTTCCATCAAAACCAT-GCCTGAGATTCTGCCAGGAAAGAAAGAAGG  49

seq1  TAAACCAGGCTCTCAGTGTTCATTCAGTAA-CCAGATCATGTAACCAAGG  96
      |||||||||||||||||||| ||||||||| ||||||||||| |||||||
seq2  TAAACCAGGCTCTCAGTGTTAATTCAGTAACCCAGATCATGT-ACCAAGG  98

seq1  AACATTAAACAACAACAGTGTTCTCT-AAGTTAAATTTTTAGTTGAATGT  145
      ||   ||||||||||||||||||||| |||||||| ||||||| ||||||
seq2  AAACATAAACAACAACAGTGTTCTCTAAAGTTAAA-TTTTAGTGGAATGT  147

seq1  AGCAGAGTGTGCCTGTAACA-CCAGCACTCAGAGATCAAGACACAGGGAG  194
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGCAGAGTGTGCCTGTAACACCCAGCACTCAGAGATCAAGACACAGGGAG  197

seq1  CTCAGGTTTGAAGCCAGCCT-GGGTGACATCACAAGACCTTATCTCAAAA  243
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTCAGGTTTGAAGCCAGCCTGGGGTGACATCACAAGACCTTATCTCAAAA  247

seq1  ATAATAAGCAATTTCAAAACA-TTTTCAAATATCTTTCTCCTGGTTTTCT  292
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATAATAAGCAATTTCAAAACATTTTTCAAATATCTTTCTCCTGGTTTTCT  297

seq1  CTGGGTTTTGAGGAGTTTGCGGGGGAGATGTTAAGGCAAACTTTCAAGGC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTTTGAGGAGTTTGCGGGGGAGATGTTAAGGCAAACTTTCAAGGC  347

seq1  AGAGCCACACTGCATACAACTCAGGTCTCACAGCTCCTGCCTGGTAATGT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCACACTGCATACAACTCAGGTCTCACAGCTCCTGCCTGGTAATGT  397

seq1  GTAAGCGCCTTCTCTTTGAACTTACTCAAGAAGAGAAAACTAACAATGGA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCGCCTTCTCTTTGAACTTACTCAAGAAGAGAAAACTAACAATGGA  447

seq1  CTCAAACAAGGAACTGGTTGTTCTCTTCCAGTGTTTACCAAAGAGTTGTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACAAGGAACTGGTTGTTCTCTTCCAGTGTTTACCAAAGAGTTGTT  497

seq1  GCTTGGAGAATGCAGGAGAAACAAGAGCTTGCCCCACTAGGTGGGTGTTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGAGAATGCAGGAGAAACAAGAGCTTGCCCCACTAGGTGGGTGTTT  547

seq1  ACAGAACAGATCCTGTGGTCATTTGTCTGTACATTAGCCTGAACTTTGCA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACAGATCCTGTGGTCATTTGTCTGTACATTAGCCTGAACTTTGCA  597

seq1  AACAAATGCCACATGACAAGATTGTCCTTCAAGAAGAGAAAAGAATTGAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATGCCACATGACAAGATTGTCCTTCAAGAAGAGAAAAGAATTGAT  647

seq1  CCCTCTTAAGCATGCAAAGGTCTTGTTTTGAAGTAAGCAGGTTCCTACAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTAAGCATGCAAAGGTCTTGTTTTGAAGTAAGCAGGTTCCTACAT  697

seq1  GCCATCGCTCACTAATTTCCACAAACGAGAACACAGACAAGTAAAGGCAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCGCTCACTAATTTCCACAAACGAGAACACAGACAAGTAAAGGCAA  747

seq1  CCACAGACCTACCTTACCACACACTTACTTTATAGAAAATACATCTTCCT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGACCTACCTTACCACACACTTACTTTATAGAAAATACATCTTCCT  797

seq1  TCCTTGTAGCTACTAGGAATTC  814
      ||||||||||||||||||||||
seq2  TCCTTGTAGCTACTAGGAATTC  819