BAC Information

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BAC

Clone NameB6Ng01-008F01
Chromosome3 (Build37)
Map Location 61,133,959 - 61,240,131
singlet/doubletdoublet
Overlap geneRap2b
Upstream geneLOC669823, LOC100040485, Mbnl1, LOC676933, LOC100040501, EG666853, P2ry1
Downstream geneLOC666891, LOC669910, LOC676965, 4631416L12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008F01.bB6Ng01-008F01.g
ACCDH844611DH844612
length965433
definitionDH844611|Mus musculus domesticus DNA, BAC clone: B6Ng01-008F01, 5' end.DH844612|Mus musculus domesticus DNA, BAC clone: B6Ng01-008F01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,239,166 - 61,240,131)(61,133,959 - 61,134,397)
sequence
gaattccatagaagtagcagagcttatgtttgagccctagagtttgcttc
tagggacactacatcttgaaacctcttataatggacacaagtagcttcca
gaatactaaatccaattttgtttcttcatatttcattctgctgattgaca
tctctgttggttaaaattatggatccctttatgtgaatgtctttctttgg
ctattctgcttttcctaattccctgctaattccacaatatacacctttcc
tgaaccatactcagaacctattttatctgctctctttgtttgttctaaat
tctttaagtatgttcaactgtttcaggaaagatagctaagtcttaattca
caaattcatgaacaattaccttatttgagactaagtatttacctacaatc
cagttaaaatgaagttattggtgtgagatgaaaagtagtatgttcatgtc
cttataaaggcagacattcagacacaagaaaaaggtatactcatagggaa
aatgatgggaagacacaagaagaccacatcttcaaacctaaggttctcag
aagctaagagaaggatggatgggtagcgctgcccacatcttgattttaga
acatccagaacccggagacaatcattttgttactgttgtgacttaagcca
taatgttaatggtactttatgatggcatctccaagtatataagggctggg
ggataaactacttcataaagtttctataactcatactctagtcctgattt
tctttttagcattatatccataattccaacatcatctattcctgtctaat
tttcctcttgcctttcagaatattactctgctcttctcttttcacctttg
atgcctgcactgagcctttgtaagtgatgtatctttggctcttcaaccac
ttccagagaaagcacaaagttactttgaaatcttctttccattctcttaa
agtatctccagttct
acaaattaggacagatactggaaacacaacatacattttctgcattgaaa
ctaagcagtaaggaagcaaagcccatcgtgtccccagtcttcacactcct
gtggtcagaccttggtgttcccatctgggtgcattcgatggtgacacgtt
agagtgctctctgctccttccttccctttgctgtcttctgctctaggtca
cttattttgtgtgcccattcttctcatgagatttcagatattgatcctat
gctaatgatttctaggtttccctttctttggctcatacttctacacaaaa
attatttccttccccaactgtctacctaagcccaaccagattgaactgac
atataagtctaaatttgaacagatctgcaggaagatggggcatggggagc
ctgtaagggtctaggtggtattggggggttgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_61239166_61240131
seq2: B6Ng01-008F01.b_42_1006 (reverse)

seq1  AGAACTGGAGATAACTTTAAGAGAATGGAAAATGAGATTTCAAAGGTAAC  50
      |||||||||||| ||||||||||||||| |||  |||||||||| |||||
seq2  AGAACTGGAGAT-ACTTTAAGAGAATGG-AAAGAAGATTTCAAA-GTAAC  47

seq1  TTTGTGCTTTCTCTGG-AGTGGTTGAGGAGCCAAAGATACATCACTTACA  99
      |||||||||||||||| ||||||||| |||||||||||||||||||||||
seq2  TTTGTGCTTTCTCTGGAAGTGGTTGAAGAGCCAAAGATACATCACTTACA  97

seq1  AAGGCTCAGTGCAGGCATCAAAGGTGAAAAGAGAAGAGCAGAGTAATATT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCAGTGCAGGCATCAAAGGTGAAAAGAGAAGAGCAGAGTAATATT  147

seq1  CTGAAAGGCAAGAGGAAAATTAGACAGGAATAGATGATGTTGGAATTATG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGGCAAGAGGAAAATTAGACAGGAATAGATGATGTTGGAATTATG  197

seq1  GATATAATGCTAAAAAGAAAATCAGGACTAGAGTATGAGTTATAGAAACT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAATGCTAAAAAGAAAATCAGGACTAGAGTATGAGTTATAGAAACT  247

seq1  TTATGAAGTAGTTTATCCCCCAGCCCTTATATACTTGGAGATGCCATCAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAGTAGTTTATCCCCCAGCCCTTATATACTTGGAGATGCCATCAT  297

seq1  -AAGTACCATTAACATTATGGCTTAAGTCACAACAGTAACAAAATGATTG  348
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACCATTAACATTATGGCTTAAGTCACAACAGTAACAAAATGATTG  347

seq1  TCTCCGGGTTCTGGATGTTCTAAAATCAAGATGTGGGCAGCGCTACCCAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCGGGTTCTGGATGTTCTAAAATCAAGATGTGGGCAGCGCTACCCAT  397

seq1  CCATCCTTCTCTTAGCTTCTGAGAACCTTAGGTTTGAAGATGTGGTCTTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTTCTCTTAGCTTCTGAGAACCTTAGGTTTGAAGATGTGGTCTTC  447

seq1  TTGTGTCTTCCCATCATTTTCCCTATGAGTATACCTTTTTCTTGTGTCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCTTCCCATCATTTTCCCTATGAGTATACCTTTTTCTTGTGTCTG  497

seq1  AATGTCTGCCTTTATAAGGACATGAACATACTACTTTTCATCTCACACCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTGCCTTTATAAGGACATGAACATACTACTTTTCATCTCACACCA  547

seq1  ATAACTTCATTTTAACTGGATTGTAGGTAAATACTTAGTCTCAAATAAGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTCATTTTAACTGGATTGTAGGTAAATACTTAGTCTCAAATAAGG  597

seq1  TAATTGTTCATGAATTTGTGAATTAAGACTTAGCTATCTTTCCTGAAACA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTTCATGAATTTGTGAATTAAGACTTAGCTATCTTTCCTGAAACA  647

seq1  GTTGAACATACTTAAAGAATTTAGAACAAACAAAGAGAGCAGATAAAATA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAACATACTTAAAGAATTTAGAACAAACAAAGAGAGCAGATAAAATA  697

seq1  GGTTCTGAGTATGGTTCAGGAAAGGTGTATATTGTGGAATTAGCAGGGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGAGTATGGTTCAGGAAAGGTGTATATTGTGGAATTAGCAGGGAA  747

seq1  TTAGGAAAAGCAGAATAGCCAAAGAAAGACATTCACATAAAGGGATCCAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAAAGCAGAATAGCCAAAGAAAGACATTCACATAAAGGGATCCAT  797

seq1  AATTTTAACCAACAGAGATGTCAATCAGCAGAATGAAATATGAAGAAACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAACCAACAGAGATGTCAATCAGCAGAATGAAATATGAAGAAACA  847

seq1  AAATTGGATTTAGTATTCTGGAAGCTACTTGTGTCCATTATAAGAGGTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGATTTAGTATTCTGGAAGCTACTTGTGTCCATTATAAGAGGTTT  897

seq1  CAAGATGTAGTGTCCCTAGAAGCAAACTCTAGGGCTCAAACATAAGCTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGTAGTGTCCCTAGAAGCAAACTCTAGGGCTCAAACATAAGCTCT  947

seq1  GCTACTTCTATGGAATTC  966
      ||||||||||||||||||
seq2  GCTACTTCTATGGAATTC  965

seq1: chr3_61133959_61134397
seq2: B6Ng01-008F01.g_66_504

seq1  GAATTCACAAATTAGGACAGATACTGGAAACACAACATACATTTTCTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAATTAGGACAGATACTGGAAACACAACATACATTTTCTGCA  50

seq1  TTGAAACTAAGCAGTAAGGAAGCAAAGCCCATCGTGTCCCCAGTCTTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACTAAGCAGTAAGGAAGCAAAGCCCATCGTGTCCCCAGTCTTCAC  100

seq1  ACTCCTGTGGTCAGACCTTGGTGTTCCCATCTGGGTGCATTCGATGGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGTGGTCAGACCTTGGTGTTCCCATCTGGGTGCATTCGATGGTGA  150

seq1  CACGTTAGAGTGCTCTCTGCTCCTTCCTTCCCTTTGCTGTCTTCTGCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTAGAGTGCTCTCTGCTCCTTCCTTCCCTTTGCTGTCTTCTGCTCT  200

seq1  AGGTCACTTATTTTGTGTGCCCATTCTTCTCATGAGATTTCAGATATTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACTTATTTTGTGTGCCCATTCTTCTCATGAGATTTCAGATATTGA  250

seq1  TCCTATGCTAATGATTTCTAGGTTTCCCTTTCTTTGGCTCATACTTCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGCTAATGATTTCTAGGTTTCCCTTTCTTTGGCTCATACTTCTAC  300

seq1  ACAAAAATTATTTCCTTCCCCAACTGTCTACCTAAGCCCAACCAGATTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATTATTTCCTTCCCCAACTGTCTACCTAAGCCCAACCAGATTGA  350

seq1  ACTGACATATAAGTCTAAATTTGAACAGATCTGCAGGAAGATGGGGCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACATATAAGTCTAAATTTGAACAGATCTGCAGGAAGATGGGGCATG  400

seq1  GGGAGCCTGTAAGGGTCTAGGTGGTATTGGGGGGTTGGA  439
      |||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCTGTAAGGGTCTAGGTGGTATTGGGGGGTTGGA  439