BAC Information

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BAC

Clone NameB6Ng01-008F08
Chromosome3 (Build37)12 (Build37)
Map Location 54,120,321 - 54,121,55859,810,227 - 59,810,741
singlet/doubletsingletsinglet
Overlap geneTrpc4
Upstream geneLOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155, Ufm1, EG666444, LOC100039937
Downstream genePostn, LOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524, 6030405A18Rik, Ccna1, 4931419H13Rik, Spg20, A730037C10Rik, Sohlh2, Dclk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008F08.bB6Ng01-008F08.g
ACCDH844621DH844622
length1,207325
definitionDH844621|Mus musculus domesticus DNA, BAC clone: B6Ng01-008F08, 5' end.DH844622|Mus musculus domesticus DNA, BAC clone: B6Ng01-008F08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(54,120,321 - 54,121,558)(59,810,227 - 59,810,741)
sequence
gaattctttcaggttctgtgattttacgctttgaacgctggccccctccg
catcaaagatcgttagagaaacaagagctaaacagtcattgagataagca
aggagaggagctgccaaaaagacggatcagattgtcagttaaatagactc
caaagtatttttctgcaaccataaatctcgatgatgaggctaaatgcttc
cctttgtcctggaagacggagggggtctggagtagaaaagaagctaataa
agaggttttccaatgaaataagaaaaatatagggatctaggaacctcgtg
taaatgagagccaggacttctggacccaatggttggtctaacccccccgc
ataatgtattgagaacagaggcagtctctccaaaggctaaggttcatgtt
atttttactttgcacatccttttcagagaaaaaaaaatatcgcattaaaa
cacgtgacccaaggaccaggaagtggcttgacagttagaagcagactcca
gagaggaagtatttaaaaatcactgtctccaagaaagtagacaacccacc
gaacagtgacagagcgcacaatcccttttgtttctctttctgttacacgt
agaagatttctttatgtgtctcagctgcttttctcattgatgtcacaaaa
cactaaagagaagcaactcaaaaaagaaaagatgtcctttgcctcatggt
ttgagaagcaatggtcactagtggcagagaaagcacagtggaacagatcg
tctcatggcatccaggactagcaccactgatacacccagaaacatgtttt
agggatctctctgctccgtcatgtttgacaaaaagaataaccctcatact
agaatataaaataccaatagaaaattaatgataccaggtatcagagtcag
gcctgaaatcctaagtagaatcccagaagacagagccttgcgtctttcaa
agagcagatcatttcatacagctctatgaaattagaaatgatgtttccgg
taagtcagcacctaacgtgtcattggattttattcacgaactaagcagac
atttctagcttcgcttcgaagttctggaatgtctgaaggaaccagctctc
tacatacactcatcaaccggcagttcacggtactctgcaaaaaagacaaa
gcaaggtatgcaagatcagaaaagagccatctctttgattatcactctgc
ccccgcg
ccctggccctccctgccacatctcggatgtgtccgacattcaaactccca
agttggaagcatgtaggtctacaaccaactcttcaacgtattaaaagaca
catctctttatctatcgatctatctatctatctatctatctatcaatcaa
tatatctatcatctatctatctatctatctatcatctatctatctatcta
tctatctatctatctatctatctatatctatctatctatatacatatcta
tctatctatatacatatacatatacatatacatatacatatatatatata
tatatatatatgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_54120321_54121558
seq2: B6Ng01-008F08.b_44_1250

seq1  GAATTCTTTCAGGTTAATGTGATTTTACAGATAAAACCAAGGCCACGAAA  50
      |||||||||||||||  |||||||||||   |  |||   |||| |    
seq2  GAATTCTTTCAGGTT-CTGTGATTTTACGCTTTGAACGCTGGCCCCCTCC  49

seq1  GCATCAAAGATCATTAGAGAAACAAGAGCTAAACAGTCATTGAGATAAGC  100
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCATCAAAGATCGTTAGAGAAACAAGAGCTAAACAGTCATTGAGATAAGC  99

seq1  AAGGAGAGGAGCTGCCAAAAAGACAGCACAGATTGTCAATTAAATAGACT  150
      |||||||||||||||||||||||| |  |||||||||| |||||||||||
seq2  AAGGAGAGGAGCTGCCAAAAAGACGGATCAGATTGTCAGTTAAATAGACT  149

seq1  CCAAAGTATTTTTCTGCAACCATAAATCTCAATGATGAGGCTAAATGCTT  200
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCAAAGTATTTTTCTGCAACCATAAATCTCGATGATGAGGCTAAATGCTT  199

seq1  CCCTTTGTCCTGGAAGACAGTGTGGCTCTGGAGTAGAAGAGAAGCTAAGA  250
      |||||||||||||||||| | | || |||||||||||| ||||||||| |
seq2  CCCTTTGTCCTGGAAGACGGAGGGGGTCTGGAGTAGAAAAGAAGCTAATA  249

seq1  AAGAGGTTTTCCAATGAAATAAGAAAAATATAGGGATCTAGGAACCTCGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTTTTCCAATGAAATAAGAAAAATATAGGGATCTAGGAACCTCGT  299

seq1  GTAAATGAGAGCCAGGACTTCTGGACCCAATGGTTGGTCTAAGCCCCCCG  350
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTAAATGAGAGCCAGGACTTCTGGACCCAATGGTTGGTCTAACCCCCCCG  349

seq1  CAGAAGGTATTGAGAACAGAGGCAGTCTCTCGAAAGGCTAAGGTTCATGT  400
      || || ||||||||||||||||||||||||| ||||||||||||||||||
seq2  CATAATGTATTGAGAACAGAGGCAGTCTCTCCAAAGGCTAAGGTTCATGT  399

seq1  TATTTTTACTTTGCACATCCTTTTCAGAGAAAAAAAAATATCGCATTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTACTTTGCACATCCTTTTCAGAGAAAAAAAAATATCGCATTAAA  449

seq1  ACACGTGACCCAAGGACCAGGAAGTGGCTTGACAGTTAGAAGCAGACTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTGACCCAAGGACCAGGAAGTGGCTTGACAGTTAGAAGCAGACTCC  499

seq1  AGAGAGGAAGTATTTAAAAATCACTGTCTCCAAGAAAGTAGACAACCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGAAGTATTTAAAAATCACTGTCTCCAAGAAAGTAGACAACCCAC  549

seq1  CGAACAGTGACAGAGCGCACAATCCCTTTTGTTTCTCTTTCTGTTACACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CGAACAGTGACAGAGCGCACAATCCCTTTTGTTTCTCTTTCTGTTACACG  599

seq1  TAGAAGATTTCTTTATGTGTCCCAGCTGCTTTTCTCATTGATGTCACAAA  650
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TAGAAGATTTCTTTATGTGTCTCAGCTGCTTTTCTCATTGATGTCACAAA  649

seq1  ACACTAAAGAGAAGCAACTCAAAAAAGAAAAGATGTCCTTTGCCTCATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAAAGAGAAGCAACTCAAAAAAGAAAAGATGTCCTTTGCCTCATGG  699

seq1  TTTGAGAAGCAATGGTCCCTAGTGGCAGAGAAAGCAGAGTGGAACAGTTC  750
      ||||||||||||||||| |||||||||||||||||| |||||||||| ||
seq2  TTTGAGAAGCAATGGTCACTAGTGGCAGAGAAAGCACAGTGGAACAGATC  749

seq1  GTCTCATGGCAGCCAGGACTAGCACCACTGATACACCCAGAAGCATGTTT  800
      ||||||||||| |||||||||||||||||||||||||||||| |||||||
seq2  GTCTCATGGCATCCAGGACTAGCACCACTGATACACCCAGAAACATGTTT  799

seq1  TAGGGATCTCTCTGCTCCGTCATGTTTGACATAAAGAATAACCATCATAC  850
      ||||||||||||||||||||||||||||||| ||||||||||| ||||||
seq2  TAGGGATCTCTCTGCTCCGTCATGTTTGACAAAAAGAATAACCCTCATAC  849

seq1  TAGAATATAAAATACCAATAGGAAAATTAATGATACCAGGTATCAGAGTC  900
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TAGAATATAAAATACCAATA-GAAAATTAATGATACCAGGTATCAGAGTC  898

seq1  AGGGCCTGAAATTCTAAGTAGAATCCCAGGAGGACAGAACCCTGCGTCTT  950
      | |||||||||| ||||||||||||||| || |||||| || ||||||||
seq2  A-GGCCTGAAATCCTAAGTAGAATCCCA-GAAGACAGAGCCTTGCGTCTT  946

seq1  CAAAAGAGGCAGGACCATTTCAGACAGCTCTATGAAATTAGGAAATGATG  1000
        ||||| ||| || ||||||| ||||||||||||||||| |||||||||
seq2  TCAAAGA-GCA-GATCATTTCATACAGCTCTATGAAATTA-GAAATGATG  993

seq1  TTTCC-GTAAGTCAGCACCTAACGTGTCATTTGGATTTTATTCAGGAACT  1049
      ||||| ||||||||||||||||||||||| |||||||||||||| |||||
seq2  TTTCCGGTAAGTCAGCACCTAACGTGTCA-TTGGATTTTATTCACGAACT  1042

seq1  AAAGCAAGACATTTCTAGCTTCCGCTTCGAAGTTCTGGGATTGCTCAGAG  1099
       |||| ||||||||||||||| |||||||||||||||| ||  || | ||
seq2  -AAGC-AGACATTTCTAGCTT-CGCTTCGAAGTTCTGGAATGTCTGA-AG  1088

seq1  GAAGCAAGCTCTCTACAATACAGTCAGCCAACGCGGCGAGTTCAGCGGAC  1149
      ||| | |||||||||| ||||| |||  |||| |||| ||||||  | ||
seq2  GAA-CCAGCTCTCTAC-ATACACTCA-TCAAC-CGGC-AGTTCACGGTAC  1133

seq1  TCCGACGAGAAGAGCCAGAGCGAAGGTAATGGCAAGGACAAGAGAAAGAA  1199
      || |   | || || || ||| ||||||   |||| ||  ||| ||||| 
seq2  TCTG--CAAAAAAGACAAAGC-AAGGTA--TGCAA-GATCAGA-AAAGA-  1175

seq1  TCTCAGCCTCTTTGATTTAACCACTCTGATCCACCCGCG  1238
         |   ||||||||||  | |||||||   | ||||||
seq2  --GCCATCTCTTTGATT--ATCACTCTG---CCCCCGCG  1207

seq1: chr12_59810227_59810741
seq2: B6Ng01-008F08.g_202_375 (reverse)

seq1  TATATATATATATATGTTTATGTATACACACTTATTCATCATTTTCTTCC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTAAATAGTACTCTATAACAACTTTTTTATATAGCATTTACATTGTTTGT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GTTGGGTACTATAAATAATCTAGAGATTTTTAAGGTATATTGGGAAATAA  150
                                                        
seq2  --------------------------------------------------  0

seq1  GCATGCCTTAAATGCGAGTACCATGCCAAAAATGACATATATATAGAGAG  200
                                                        
seq2  --------------------------------------------------  0

seq1  AGATGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA  250
                                                        
seq2  --------------------------------------------------  0

seq1  TATAGCATTTACATTGTTTGTGTTGGGTACTATAAATAATCTAGAGATTT  300
                                                        
seq2  --------------------------------------------------  0

seq1  TTAAGGTATATTGGGAAATAAGCATGCCTTAAATGCGAGTACCATGCCAA  350
            |||||    | |||   |||   || ||    |||  |||    
seq2  ------TATAT----ATATATATATG---TATAT----GTA-TATG---T  29

seq1  AAATGACATATATATATAGAGAGAT-GATAGATAGATAGATAGATAGATA  399
      | |||  |||| |||||||| |||| ||||  || |||||||||||||| 
seq2  ATATG-TATATGTATATAGATAGATAGATATGTATATAGATAGATAGAT-  77

seq1  GATAGATAGATAGATAGATAGATAGAT-GATTGATAGATAGATAGATAGA  448
       |||||||||||||||||||||||||| ||| ||||||||||| ||||||
seq2  -ATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT-GATAGA  125

seq1  TAGATAGATAGATAGATGATAG--ATAATGATAGATAGATAGATAGATAG  496
      ||||||||||||||||||||||  ||| |||| |||||||||||||||| 
seq2  TAGATAGATAGATAGATGATAGATATATTGATTGATAGATAGATAGATA-  174

seq1  ATAGATAGATAGATAGATA  515
                         
seq2  -------------------  174